Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33471 * 125.49542 * 2 1 4 4 C 1.30329 * 109.72362 * 180.02562 * 3 2 1 5 5 N 1.34680 * 108.04547 * 0.04230 * 4 3 2 6 6 N 1.30974 * 125.49702 * 180.02562 * 2 1 3 7 7 C 1.46299 * 125.04527 * 179.90743 * 5 4 3 8 8 C 1.53306 * 108.78031 * 342.99498 * 7 5 4 9 9 H 1.08992 * 109.46460 * 290.11338 * 8 7 5 10 10 N 1.46497 * 109.46850 * 170.11859 * 8 7 5 11 11 C 1.34770 * 119.99825 * 84.99170 * 10 8 7 12 12 O 1.21282 * 120.00329 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99991 * 179.97438 * 11 10 8 14 14 C 1.50696 * 109.47342 * 179.97438 * 13 11 10 15 15 C 1.37636 * 120.13417 * 264.98162 * 14 13 11 16 16 C 1.38608 * 120.25287 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.50201 * 359.97438 * 16 15 14 18 18 C 1.37598 * 120.24638 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12420 * 85.00482 * 14 13 11 20 20 C 1.41393 * 120.24547 * 359.95234 * 19 14 13 21 21 H 1.07997 * 120.00502 * 334.06352 * 20 19 14 22 22 C 1.39948 * 119.99853 * 154.05595 * 20 19 14 23 23 N 1.30819 * 120.00418 * 343.68605 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 163.68063 * 22 20 19 25 25 H 1.48498 * 109.47057 * 94.96610 * 24 22 20 26 26 H 1.48505 * 109.47009 * 214.96678 * 24 22 20 27 27 H 1.48501 * 109.47163 * 334.96370 * 24 22 20 28 28 C 1.53163 * 109.48726 * 50.11143 * 8 7 5 29 29 C 1.50932 * 127.90038 * 180.08899 * 4 3 2 30 30 H 1.08994 * 109.46724 * 89.98482 * 1 2 3 31 31 H 1.09002 * 109.47073 * 209.98047 * 1 2 3 32 32 H 1.08994 * 109.47410 * 329.97799 * 1 2 3 33 33 H 1.08993 * 109.58809 * 223.20686 * 7 5 4 34 34 H 1.09003 * 109.70362 * 102.85158 * 7 5 4 35 35 H 0.97000 * 119.99787 * 264.99416 * 10 8 7 36 36 H 1.09000 * 109.47115 * 60.00192 * 13 11 10 37 37 H 1.09002 * 109.47634 * 300.00332 * 13 11 10 38 38 H 1.08003 * 119.87397 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.74910 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.87804 * 180.28240 * 17 16 15 41 41 H 1.07995 * 120.12520 * 179.97438 * 18 17 16 42 42 H 0.97002 * 120.00448 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.50704 * 50.76382 * 28 8 7 44 44 H 1.08995 * 109.50438 * 170.88975 * 28 8 7 45 45 H 1.09008 * 109.71552 * 283.66119 * 29 4 3 46 46 H 1.08993 * 109.71828 * 44.26811 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5897 -0.6133 -0.0019 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0048 8 6 5.9853 -0.5049 -0.4305 9 1 5.8846 -0.2555 -1.4867 10 7 7.2512 -1.2098 -0.2138 11 6 7.7247 -2.0494 -1.1557 12 8 7.1032 -2.2211 -2.1829 13 6 9.0272 -2.7741 -0.9330 14 6 9.3285 -3.6438 -2.1263 15 6 8.9687 -4.9722 -2.1216 16 6 9.2451 -5.7745 -3.2175 17 6 9.8856 -5.2501 -4.3299 18 6 10.2545 -3.9248 -4.3567 19 6 9.9793 -3.1009 -3.2494 20 6 10.3533 -1.7374 -3.2658 21 1 9.8132 -1.0219 -2.6636 22 6 11.4236 -1.3150 -4.0624 23 7 12.2722 -2.1907 -4.5359 24 14 11.6402 0.4995 -4.4499 25 1 12.5862 1.1038 -3.4777 26 1 12.1797 0.6510 -5.8252 27 1 10.3269 1.1862 -4.3550 28 6 5.9681 0.7809 0.4015 29 6 4.7522 1.6266 0.0011 30 1 -0.3632 0.0003 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 4.7207 -2.2317 -0.7084 34 1 5.0070 -1.7970 0.9950 35 1 7.7484 -1.0722 0.6076 36 1 8.9491 -3.3959 -0.0412 37 1 9.8291 -2.0478 -0.8005 38 1 8.4689 -5.3912 -1.2606 39 1 8.9588 -6.8158 -3.2053 40 1 10.0920 -5.8833 -5.1802 41 1 10.7536 -3.5185 -5.2239 42 1 13.0139 -1.8980 -5.0883 43 1 5.9034 0.5287 1.4600 44 1 6.8814 1.3463 0.2166 45 1 4.9050 2.0414 -0.9953 46 1 4.6132 2.4351 0.7187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776886615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = 59.556528 kcal Electronic energy + Delta-G solvation = -28895.234754 eV Core-core repulsion = 24978.623637 eV Total energy + Delta-G solvation = -3916.611118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47409 -39.68439 -37.78504 -36.86489 -33.82148 -33.65336 -33.41018 -31.92315 -31.22868 -29.55866 -29.46119 -28.06868 -26.52537 -25.02477 -24.42019 -22.74996 -21.02250 -20.93227 -20.48341 -19.98050 -19.24266 -17.23780 -17.06878 -16.60814 -16.39686 -15.81307 -15.46645 -15.22974 -14.65247 -14.52441 -14.38767 -14.26283 -13.80423 -13.50753 -13.47195 -13.14751 -13.12872 -12.79833 -12.69565 -12.59708 -12.16318 -11.99532 -11.77858 -11.61090 -11.43120 -11.32038 -11.18849 -11.07957 -11.01575 -10.74141 -10.43300 -10.14746 -9.81210 -9.52213 -9.45837 -9.41416 -9.33776 -9.18773 -9.08867 -7.34866 -7.32950 -6.76990 -4.38000 1.48736 2.06698 2.72633 2.74777 2.90847 3.04174 3.08478 3.12673 3.23654 3.37683 3.69167 3.90111 4.10375 4.25081 4.48481 4.56458 4.63261 4.72195 4.90397 5.01105 5.20942 5.26685 5.35555 5.36035 5.44215 5.55670 5.56684 5.67495 5.71080 5.75716 5.95066 6.06559 6.22164 6.24566 6.32714 6.36105 6.44233 6.48011 6.68128 6.76202 7.04991 7.26209 7.38979 7.58531 7.69513 7.89451 8.00549 8.02915 8.10303 8.27713 8.60210 8.65924 8.87867 8.98137 10.17225 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002896 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.012444 B = 9665.103285 C =10958.678835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.212 3.788 3 N -0.540 5.540 4 C 0.275 3.725 5 N -0.368 5.368 6 N -0.314 5.314 7 C 0.116 3.884 8 C 0.135 3.865 9 H 0.102 0.898 10 N -0.736 5.736 11 C 0.515 3.485 12 O -0.513 6.513 13 C -0.068 4.068 14 C -0.185 4.185 15 C -0.081 4.081 16 C -0.240 4.240 17 C -0.106 4.106 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.794 5.794 24 Si 0.902 3.098 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.135 4.135 29 C -0.037 4.037 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.280 0.720 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 7.590 11.738 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.269 5.269 4 C -0.001 4.001 5 N -0.158 5.158 6 N -0.143 5.143 7 C -0.007 4.007 8 C 0.028 3.972 9 H 0.120 0.880 10 N -0.392 5.392 11 C 0.303 3.697 12 O -0.385 6.385 13 C -0.108 4.108 14 C -0.187 4.187 15 C -0.099 4.099 16 C -0.259 4.259 17 C -0.125 4.125 18 C -0.178 4.178 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.141 4.141 23 N -0.420 5.420 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.185 1.185 28 C -0.174 4.174 29 C -0.077 4.077 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.318 6.935 10.808 17.117 hybrid contribution 0.661 0.686 0.104 0.958 sum -10.657 7.621 10.911 17.050 Atomic orbital electron populations 1.20056 0.83946 1.03815 1.03663 1.24411 0.98229 0.85571 0.98763 1.70153 0.99817 1.30876 1.26025 1.24294 0.95049 0.84062 0.96723 1.50101 1.05662 1.05806 1.54274 1.77956 0.86636 1.22595 1.27064 1.22387 0.79071 0.95262 1.04026 1.21021 0.83496 0.90594 1.02127 0.88044 1.46101 1.22477 1.47850 1.22735 1.21468 0.87629 0.78122 0.82465 1.90715 1.59270 1.62100 1.26408 1.20260 0.93547 0.98588 0.98414 1.19021 1.11416 0.92858 0.95381 1.20297 0.99069 0.93736 0.96784 1.20313 1.10847 0.98027 0.96701 1.20687 0.99275 0.95786 0.96720 1.21302 1.04285 0.93007 0.99252 1.17337 0.87987 0.92860 0.89133 1.19445 1.12458 0.93625 1.23072 0.90817 1.25884 0.94734 0.99651 0.93821 1.69815 1.10211 1.36000 1.25948 0.86400 0.79422 0.82901 0.78629 1.19600 1.20026 1.18524 1.22042 0.99260 0.95543 1.00531 1.20329 0.86377 0.95745 1.05216 0.89939 0.90131 0.89689 0.87931 0.89265 0.76365 0.90406 0.88305 0.89778 0.89653 0.89565 0.86540 0.90935 0.90301 0.88266 0.87767 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.21 2.87 8.15 -156.43 -1.27 1.60 16 3 N -0.54 -7.51 11.18 -8.02 -0.09 -7.60 16 4 C 0.28 3.44 7.72 -155.77 -1.20 2.24 16 5 N -0.37 -5.02 4.04 -58.29 -0.24 -5.26 16 6 N -0.31 -4.75 12.74 32.51 0.41 -4.33 16 7 C 0.12 1.41 6.87 -3.99 -0.03 1.39 16 8 C 0.13 1.50 2.47 -67.69 -0.17 1.33 16 9 H 0.10 1.42 7.55 -51.93 -0.39 1.02 16 10 N -0.74 -8.63 5.08 -53.58 -0.27 -8.90 16 11 C 0.52 8.88 7.43 -10.99 -0.08 8.80 16 12 O -0.51 -11.34 15.70 5.56 0.09 -11.25 16 13 C -0.07 -1.22 5.18 -29.04 -0.15 -1.37 16 14 C -0.18 -4.26 4.43 -103.92 -0.46 -4.72 16 15 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 16 C -0.24 -5.50 10.05 -39.29 -0.39 -5.89 16 17 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 18 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 19 C 0.13 3.35 5.56 -106.82 -0.59 2.76 16 20 C -0.46 -11.55 8.14 -37.74 -0.31 -11.86 16 21 H 0.07 1.79 6.68 -52.49 -0.35 1.44 16 22 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 23 N -0.79 -20.07 10.97 55.55 0.61 -19.46 16 24 Si 0.90 18.23 29.59 -169.99 -5.03 13.20 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 28 C -0.14 -1.01 5.43 -26.43 -0.14 -1.15 16 29 C -0.04 -0.30 6.33 -27.55 -0.17 -0.48 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.40 3.30 8.60 -40.82 -0.35 2.95 16 36 H 0.08 1.13 8.05 -51.93 -0.42 0.72 16 37 H 0.10 1.71 7.06 -51.93 -0.37 1.35 16 38 H 0.08 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 3.16 6.22 -52.49 -0.33 2.83 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 43 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -33.63 382.31 -10.97 -44.60 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.41 Total: 8.61 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -5.81 Total: -15.37 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.43 Total: -45.56 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.63 -10.97 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776886615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.159 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds