Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33471 * 125.49542 * 2 1 4 4 C 1.30329 * 109.72362 * 180.02562 * 3 2 1 5 5 N 1.34680 * 108.04547 * 0.04230 * 4 3 2 6 6 N 1.30974 * 125.49702 * 180.02562 * 2 1 3 7 7 C 1.46299 * 125.04527 * 179.90743 * 5 4 3 8 8 C 1.53306 * 108.78031 * 342.99498 * 7 5 4 9 9 H 1.08992 * 109.46460 * 290.11338 * 8 7 5 10 10 N 1.46497 * 109.46850 * 170.11859 * 8 7 5 11 11 C 1.34770 * 119.99825 * 84.99170 * 10 8 7 12 12 O 1.21282 * 120.00329 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99991 * 179.97438 * 11 10 8 14 14 C 1.50696 * 109.47342 * 179.97438 * 13 11 10 15 15 C 1.37636 * 120.13417 * 264.98162 * 14 13 11 16 16 C 1.38608 * 120.25287 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.50201 * 359.97438 * 16 15 14 18 18 C 1.37598 * 120.24638 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12420 * 85.00482 * 14 13 11 20 20 C 1.41393 * 120.24547 * 359.95234 * 19 14 13 21 21 H 1.07997 * 120.00502 * 334.06352 * 20 19 14 22 22 C 1.39948 * 119.99853 * 154.05595 * 20 19 14 23 23 N 1.30819 * 120.00418 * 343.68605 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 163.68063 * 22 20 19 25 25 H 1.48498 * 109.47057 * 94.96610 * 24 22 20 26 26 H 1.48505 * 109.47009 * 214.96678 * 24 22 20 27 27 H 1.48501 * 109.47163 * 334.96370 * 24 22 20 28 28 C 1.53163 * 109.48726 * 50.11143 * 8 7 5 29 29 C 1.50932 * 127.90038 * 180.08899 * 4 3 2 30 30 H 1.08994 * 109.46724 * 89.98482 * 1 2 3 31 31 H 1.09002 * 109.47073 * 209.98047 * 1 2 3 32 32 H 1.08994 * 109.47410 * 329.97799 * 1 2 3 33 33 H 1.08993 * 109.58809 * 223.20686 * 7 5 4 34 34 H 1.09003 * 109.70362 * 102.85158 * 7 5 4 35 35 H 0.97000 * 119.99787 * 264.99416 * 10 8 7 36 36 H 1.09000 * 109.47115 * 60.00192 * 13 11 10 37 37 H 1.09002 * 109.47634 * 300.00332 * 13 11 10 38 38 H 1.08003 * 119.87397 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.74910 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.87804 * 180.28240 * 17 16 15 41 41 H 1.07995 * 120.12520 * 179.97438 * 18 17 16 42 42 H 0.97002 * 120.00448 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.50704 * 50.76382 * 28 8 7 44 44 H 1.08995 * 109.50438 * 170.88975 * 28 8 7 45 45 H 1.09008 * 109.71552 * 283.66119 * 29 4 3 46 46 H 1.08993 * 109.71828 * 44.26811 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5897 -0.6133 -0.0019 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0048 8 6 5.9853 -0.5049 -0.4305 9 1 5.8846 -0.2555 -1.4867 10 7 7.2512 -1.2098 -0.2138 11 6 7.7247 -2.0494 -1.1557 12 8 7.1032 -2.2211 -2.1829 13 6 9.0272 -2.7741 -0.9330 14 6 9.3285 -3.6438 -2.1263 15 6 8.9687 -4.9722 -2.1216 16 6 9.2451 -5.7745 -3.2175 17 6 9.8856 -5.2501 -4.3299 18 6 10.2545 -3.9248 -4.3567 19 6 9.9793 -3.1009 -3.2494 20 6 10.3533 -1.7374 -3.2658 21 1 9.8132 -1.0219 -2.6636 22 6 11.4236 -1.3150 -4.0624 23 7 12.2722 -2.1907 -4.5359 24 14 11.6402 0.4995 -4.4499 25 1 12.5862 1.1038 -3.4777 26 1 12.1797 0.6510 -5.8252 27 1 10.3269 1.1862 -4.3550 28 6 5.9681 0.7809 0.4015 29 6 4.7522 1.6266 0.0011 30 1 -0.3632 0.0003 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 4.7207 -2.2317 -0.7084 34 1 5.0070 -1.7970 0.9950 35 1 7.7484 -1.0722 0.6076 36 1 8.9491 -3.3959 -0.0412 37 1 9.8291 -2.0478 -0.8005 38 1 8.4689 -5.3912 -1.2606 39 1 8.9588 -6.8158 -3.2053 40 1 10.0920 -5.8833 -5.1802 41 1 10.7536 -3.5185 -5.2239 42 1 13.0139 -1.8980 -5.0883 43 1 5.9034 0.5287 1.4600 44 1 6.8814 1.3463 0.2166 45 1 4.9050 2.0414 -0.9953 46 1 4.6132 2.4351 0.7187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776886615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 39.010411 kcal Electronic energy + Delta-G solvation = -28896.125701 eV Core-core repulsion = 24978.623637 eV Total energy + Delta-G solvation = -3917.502064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.43138 -40.98886 -39.33338 -38.10304 -35.48577 -34.94071 -34.28970 -33.46308 -32.22531 -31.33515 -30.47549 -29.19333 -27.94236 -26.78129 -25.28045 -23.72491 -22.82108 -22.21935 -21.64072 -21.15769 -20.49331 -19.05250 -18.08247 -17.84538 -17.44925 -17.24453 -16.82028 -16.25671 -16.17581 -15.92086 -15.40402 -15.26060 -15.22051 -14.89327 -14.76175 -14.36241 -14.24458 -14.07363 -13.64404 -13.51053 -13.41831 -13.35307 -12.92405 -12.88616 -12.81623 -12.72284 -12.62257 -12.49071 -12.20052 -12.12121 -12.08434 -11.31565 -11.20868 -11.16243 -11.00399 -10.83642 -10.79095 -10.39661 -10.21347 -9.22367 -9.15955 -8.58050 -6.27679 0.52313 0.98628 1.09949 1.17759 1.38510 1.49729 1.55736 1.76798 1.79318 2.21291 2.25767 2.80376 2.90163 3.19215 3.46708 3.65607 3.74478 3.80372 3.90514 4.12626 4.15093 4.28186 4.37608 4.40545 4.44229 4.62961 4.64003 4.69932 4.71660 4.73446 4.83637 4.85214 4.92261 4.93993 5.03240 5.09510 5.21818 5.27334 5.35751 5.37848 5.45195 5.55817 5.76785 5.78766 6.04380 6.17587 6.22097 6.42278 6.62416 6.75660 7.00345 7.02717 7.12771 7.40175 8.38538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002896 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.012444 B = 9665.103285 C =10958.678835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.205 3.795 3 N -0.562 5.562 4 C 0.274 3.726 5 N -0.380 5.380 6 N -0.355 5.355 7 C 0.121 3.879 8 C 0.139 3.861 9 H 0.070 0.930 10 N -0.709 5.709 11 C 0.520 3.480 12 O -0.570 6.570 13 C -0.068 4.068 14 C -0.188 4.188 15 C -0.092 4.092 16 C -0.247 4.247 17 C -0.119 4.119 18 C -0.196 4.196 19 C 0.096 3.904 20 C -0.479 4.479 21 H 0.078 0.922 22 C 0.034 3.966 23 N -0.828 5.828 24 Si 0.972 3.028 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.263 1.263 28 C -0.122 4.122 29 C -0.035 4.035 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.424 0.576 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 9.418 14.417 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 N -0.292 5.292 4 C -0.002 4.002 5 N -0.170 5.170 6 N -0.184 5.184 7 C -0.003 4.003 8 C 0.032 3.968 9 H 0.088 0.912 10 N -0.364 5.364 11 C 0.308 3.692 12 O -0.447 6.447 13 C -0.108 4.108 14 C -0.190 4.190 15 C -0.110 4.110 16 C -0.266 4.266 17 C -0.137 4.137 18 C -0.216 4.216 19 C 0.094 3.906 20 C -0.508 4.508 21 H 0.096 0.904 22 C -0.180 4.180 23 N -0.455 5.455 24 Si 0.793 3.207 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.187 1.187 28 C -0.160 4.160 29 C -0.075 4.075 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.587 8.773 13.554 19.873 hybrid contribution 0.670 0.030 -0.699 0.969 sum -10.917 8.803 12.855 19.024 Atomic orbital electron populations 1.20238 0.81362 1.05093 1.04647 1.25223 0.99889 0.85176 0.97396 1.70204 1.00562 1.31211 1.27173 1.25161 0.96001 0.84084 0.94982 1.50168 1.05472 1.06449 1.54939 1.77891 0.87592 1.24017 1.28942 1.22333 0.79180 0.94539 1.04210 1.21018 0.82427 0.92065 1.01288 0.91222 1.45711 1.22510 1.45899 1.22314 1.21265 0.87100 0.78435 0.82386 1.90709 1.60812 1.64255 1.28970 1.20292 0.94029 0.98782 0.97668 1.19559 1.09340 0.93961 0.96135 1.20751 0.98738 0.93713 0.97771 1.20707 1.09998 0.99502 0.96370 1.20936 0.99416 0.95361 0.98001 1.21315 1.06454 0.94411 0.99399 1.17759 0.89191 0.93582 0.90114 1.19637 1.13130 0.93711 1.24353 0.90438 1.26718 0.94080 1.04003 0.93234 1.69891 1.10845 1.38089 1.26626 0.85340 0.79361 0.77346 0.78613 1.17769 1.19939 1.18697 1.22037 0.99854 0.93211 1.00918 1.20594 0.84680 0.95731 1.06454 0.88974 0.89080 0.88142 0.91248 0.87170 0.73705 0.86502 0.87737 0.86498 0.87027 0.88042 0.88706 0.90460 0.87895 0.85988 0.87263 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.20 5.45 8.15 138.48 1.13 6.58 16 3 N -0.56 -15.05 11.18 -179.30 -2.01 -17.06 16 4 C 0.27 6.45 7.72 138.37 1.07 7.52 16 5 N -0.38 -10.18 4.04 -338.33 -1.37 -11.55 16 6 N -0.36 -10.79 12.74 -51.07 -0.65 -11.44 16 7 C 0.12 2.86 6.87 86.52 0.59 3.45 16 8 C 0.14 2.87 2.47 45.15 0.11 2.98 16 9 H 0.07 1.94 7.55 -2.39 -0.02 1.93 16 10 N -0.71 -14.91 5.08 -441.81 -2.24 -17.15 16 11 C 0.52 17.36 7.43 87.66 0.65 18.01 16 12 O -0.57 -25.68 15.70 -3.04 -0.05 -25.73 16 13 C -0.07 -2.31 5.18 29.10 0.15 -2.16 16 14 C -0.19 -8.63 4.43 -19.41 -0.09 -8.72 16 15 C -0.09 -4.02 9.66 22.22 0.21 -3.80 16 16 C -0.25 -11.21 10.05 22.46 0.23 -10.99 16 17 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 18 C -0.20 -10.80 8.69 22.73 0.20 -10.60 16 19 C 0.10 5.11 5.56 -21.29 -0.12 4.99 16 20 C -0.48 -24.74 8.14 23.46 0.19 -24.55 16 21 H 0.08 3.79 6.68 -2.91 -0.02 3.77 16 22 C 0.03 1.68 5.16 85.26 0.44 2.12 16 23 N -0.83 -43.22 10.97 21.83 0.24 -42.98 16 24 Si 0.97 37.51 29.59 68.60 2.03 39.54 16 25 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 26 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 28 C -0.12 -1.36 5.43 30.79 0.17 -1.19 16 29 C -0.03 -0.47 6.33 30.06 0.19 -0.28 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 5.26 8.60 -92.71 -0.80 4.46 16 36 H 0.12 2.99 8.05 -2.39 -0.02 2.97 16 37 H 0.10 3.44 7.06 -2.39 -0.02 3.42 16 38 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.09 5.48 6.22 -2.91 -0.02 5.46 16 42 H 0.28 13.53 8.30 -92.71 -0.77 12.77 16 43 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 44 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -78.40 382.31 2.27 -76.13 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.22 Total: 32.69 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 6.10 Total: -22.46 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -6.03 Total: -100.17 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -78.40 2.27 -76.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776886615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.145 kcal (2) G-P(sol) polarization free energy of solvation -78.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds