Wall clock time and date at job start Sat Apr 11 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78346 * 2 1 4 4 C 1.36146 * 107.86077 * 179.97438 * 3 2 1 5 5 N 1.39379 * 126.26188 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00349 * 359.96291 * 5 4 3 7 7 O 1.21614 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.47482 * 120.00411 * 179.97438 * 6 5 4 9 9 C 1.39830 * 120.21243 * 359.73259 * 8 6 5 10 10 C 1.37392 * 120.12083 * 179.85313 * 9 8 6 11 11 C 1.39766 * 120.39305 * 0.58425 * 10 9 8 12 12 C 1.39305 * 119.30027 * 359.46383 * 11 10 9 13 13 C 1.37416 * 120.65504 * 0.31784 * 12 11 10 14 14 C 1.51614 * 107.87897 * 180.52657 * 12 11 10 15 15 C 1.54604 * 102.73001 * 16.01271 * 14 12 11 16 16 N 1.39468 * 129.73960 * 179.23104 * 11 10 9 17 17 C 1.46904 * 110.99841 * 283.72650 * 16 11 10 18 18 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 19 19 C 1.46501 * 126.09680 * 179.97438 * 18 4 3 20 20 C 1.50698 * 109.46943 * 270.02493 * 19 18 4 21 21 H 1.08003 * 120.00367 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00202 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47205 * 89.99989 * 24 22 20 26 26 H 1.48504 * 109.47106 * 210.00165 * 24 22 20 27 27 H 1.48500 * 109.46947 * 330.00090 * 24 22 20 28 28 N 1.30835 * 125.77674 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47010 * 270.02898 * 1 2 3 30 30 H 1.08998 * 109.46435 * 30.02479 * 1 2 3 31 31 H 1.08994 * 109.47526 * 150.02387 * 1 2 3 32 32 H 1.07995 * 126.06663 * 0.02562 * 3 2 1 33 33 H 0.97005 * 120.00418 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.94223 * 0.12624 * 9 8 6 35 35 H 1.08000 * 119.80111 * 180.33813 * 10 9 8 36 36 H 1.08005 * 120.02550 * 179.82089 * 13 12 11 37 37 H 1.08996 * 110.75964 * 134.32491 * 14 12 11 38 38 H 1.09005 * 110.76047 * 257.52213 * 14 12 11 39 39 H 1.09004 * 110.77674 * 92.72284 * 15 14 12 40 40 H 1.09003 * 110.78006 * 215.95794 * 15 14 12 41 41 H 1.09003 * 109.47010 * 299.85634 * 17 16 11 42 42 H 1.09008 * 109.47021 * 59.85313 * 17 16 11 43 43 H 1.09001 * 109.47558 * 179.85487 * 17 16 11 44 44 H 1.09007 * 109.46955 * 30.02131 * 19 18 4 45 45 H 1.08992 * 109.47542 * 150.02203 * 19 18 4 46 46 H 0.97003 * 119.99604 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 0.0006 5 7 4.7497 1.5302 0.0013 6 6 4.6132 2.8710 0.0007 7 8 3.5038 3.3693 0.0000 8 6 5.8091 3.7340 0.0020 9 6 7.0868 3.1660 0.0095 10 6 8.1997 3.9717 0.0077 11 6 8.0654 5.3629 0.0106 12 6 6.7907 5.9248 0.0040 13 6 5.6728 5.1257 0.0013 14 6 6.9468 7.4328 -0.0042 15 6 8.4248 7.6201 -0.4173 16 7 9.0471 6.3534 0.0239 17 6 9.6350 6.4940 1.3628 18 7 3.6088 -0.6434 0.0004 19 6 4.7858 -1.5158 0.0003 20 6 5.1898 -1.8141 -1.4206 21 1 4.6259 -1.3961 -2.2415 22 6 6.2792 -2.6207 -1.6727 23 7 6.9661 -3.1294 -0.6731 24 14 6.7795 -2.9912 -3.4339 25 1 7.7453 -1.9641 -3.9006 26 1 7.4143 -4.3322 -3.4965 27 1 5.5768 -2.9716 -4.3046 28 7 2.2719 -1.0615 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9877 2.1598 0.0004 33 1 5.6346 1.1329 0.0020 34 1 7.1992 2.0919 0.0123 35 1 9.1840 3.5274 0.0080 36 1 4.6893 5.5722 -0.0009 37 1 6.2801 7.8863 -0.7376 38 1 6.7649 7.8455 0.9882 39 1 8.5123 7.7383 -1.4974 40 1 8.8661 8.4719 0.1003 41 1 8.8561 6.7673 2.0747 42 1 10.0858 5.5480 1.6629 43 1 10.3992 7.2710 1.3444 44 1 5.6075 -1.0173 0.5146 45 1 4.5477 -2.4473 0.5135 46 1 7.7323 -3.6971 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778562762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:49 Heat of formation + Delta-G solvation = 87.333250 kcal Electronic energy + Delta-G solvation = -28693.134719 eV Core-core repulsion = 24777.728090 eV Total energy + Delta-G solvation = -3915.406628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24518 -40.70777 -39.21020 -36.69410 -34.79180 -33.77882 -32.71075 -32.04982 -30.59747 -29.43858 -29.02950 -28.04502 -26.35973 -26.01379 -24.10236 -22.84142 -22.57679 -21.37017 -20.88576 -19.77296 -19.16545 -17.39665 -16.87260 -16.76999 -16.58186 -15.90608 -15.58003 -15.36644 -15.13765 -14.62038 -14.31268 -14.14974 -14.00513 -13.90240 -13.57292 -13.28769 -13.05396 -12.82187 -12.77694 -12.62539 -12.49794 -12.40945 -12.11721 -11.99546 -11.77232 -11.56942 -11.53788 -11.13981 -11.07271 -10.88570 -10.39288 -10.33300 -9.95394 -9.80683 -9.76673 -9.52591 -9.09372 -8.72058 -8.26483 -7.89221 -7.42106 -6.33404 -4.41861 0.59332 1.16478 2.39725 2.79461 3.04850 3.16637 3.24074 3.27823 3.30593 3.51415 3.78605 3.80844 4.21093 4.25040 4.41635 4.57990 4.62262 4.76225 4.85141 4.99372 5.00148 5.05189 5.12603 5.23414 5.28897 5.37360 5.43078 5.51037 5.58613 5.63078 5.77486 5.97179 6.04177 6.05160 6.12045 6.17934 6.19579 6.29643 6.36689 6.43191 6.52209 6.69000 6.83573 6.89422 7.04632 7.52367 7.58543 7.63251 7.79788 7.91584 8.29883 8.62241 8.71486 9.25917 10.73608 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.003307 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.095177 B = 8465.638823 C =10764.682522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.292 4.292 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.568 3.432 7 O -0.514 6.514 8 C -0.140 4.140 9 C -0.064 4.064 10 C -0.116 4.116 11 C 0.114 3.886 12 C -0.153 4.153 13 C -0.023 4.023 14 C -0.108 4.108 15 C 0.049 3.951 16 N -0.498 5.498 17 C 0.027 3.973 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 N -0.283 5.283 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.415 0.585 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 20.721 4.029 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.324 4.324 4 C 0.079 3.921 5 N -0.281 5.281 6 C 0.356 3.644 7 O -0.390 6.390 8 C -0.144 4.144 9 C -0.083 4.083 10 C -0.135 4.135 11 C 0.018 3.982 12 C -0.156 4.156 13 C -0.043 4.043 14 C -0.146 4.146 15 C -0.078 4.078 16 N -0.215 5.215 17 C -0.119 4.119 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.108 5.108 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.791 19.515 3.769 20.234 hybrid contribution 0.532 0.371 -0.516 0.829 sum 4.323 19.885 3.253 20.608 Atomic orbital electron populations 1.20018 0.87584 1.02446 1.02024 1.22019 0.96527 0.91010 1.01979 1.21274 0.89058 1.00465 1.21594 1.17997 0.87892 0.83294 1.02932 1.42622 1.08378 1.05460 1.71640 1.17960 0.89073 0.80835 0.76534 1.90708 1.26042 1.73892 1.48357 1.19602 0.92483 0.93617 1.08712 1.21222 0.91070 1.00336 0.95651 1.20408 0.99416 0.90339 1.03376 1.19748 0.89808 0.92482 0.96209 1.20872 0.93599 0.95838 1.05293 1.20383 0.98509 0.91150 0.94238 1.21670 0.98226 0.91777 1.02911 1.23205 0.91680 0.90711 1.02210 1.59901 1.30951 1.04899 1.25762 1.22501 0.99058 1.03328 0.87014 1.49501 1.06473 1.02031 1.55228 1.19615 0.77835 0.89712 0.98904 1.21356 1.13321 1.31871 0.91367 0.91670 1.24931 0.95683 0.94847 0.98177 1.69922 1.19151 1.32637 1.31050 0.86363 0.78863 0.77871 0.83701 1.20268 1.20778 1.19594 1.77331 0.86153 1.21818 1.25520 0.91386 0.91139 0.91503 0.82079 0.74706 0.84530 0.84869 0.84501 0.89212 0.89943 0.89029 0.89483 0.94558 0.90634 0.90522 0.93922 0.92496 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.42 16 3 C -0.29 -6.13 9.58 -39.78 -0.38 -6.51 16 4 C 0.30 6.51 7.68 -152.75 -1.17 5.33 16 5 N -0.63 -11.61 5.36 -12.30 -0.07 -11.68 16 6 C 0.57 9.66 7.73 -12.50 -0.10 9.56 16 7 O -0.51 -9.78 13.48 5.26 0.07 -9.71 16 8 C -0.14 -1.95 5.88 -104.94 -0.62 -2.57 16 9 C -0.06 -0.79 9.52 -39.29 -0.37 -1.16 16 10 C -0.12 -1.30 10.05 -39.32 -0.40 -1.70 16 11 C 0.11 1.26 5.57 -83.42 -0.46 0.79 16 12 C -0.15 -1.66 6.21 -104.07 -0.65 -2.31 16 13 C -0.02 -0.29 9.58 -39.29 -0.38 -0.67 16 14 C -0.11 -0.82 6.98 -26.59 -0.19 -1.01 16 15 C 0.05 0.34 6.99 -2.45 -0.02 0.32 16 16 N -0.50 -4.59 5.31 -176.82 -0.94 -5.53 16 17 C 0.03 0.19 9.28 60.07 0.56 0.75 16 18 N -0.35 -8.25 3.62 -61.45 -0.22 -8.47 16 19 C 0.26 6.46 6.02 -5.19 -0.03 6.43 16 20 C -0.54 -14.59 9.39 -34.44 -0.32 -14.92 16 21 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 24 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 28 N -0.28 -6.68 12.56 33.64 0.42 -6.26 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.16 3.28 5.82 -52.49 -0.31 2.97 16 33 H 0.42 7.00 6.02 -40.82 -0.25 6.76 16 34 H 0.14 1.59 6.40 -52.49 -0.34 1.25 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.14 1.66 7.65 -52.48 -0.40 1.25 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.42 7.77 -51.93 -0.40 0.02 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 44 H 0.04 1.03 7.52 -51.93 -0.39 0.64 16 45 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -32.19 384.79 -10.34 -42.52 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.28 Total: 7.17 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -4.84 Total: -6.09 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.07 Total: -55.43 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.19 -10.34 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778562762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.854 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds