Wall clock time and date at job start Sat Apr 11 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78346 * 2 1 4 4 C 1.36146 * 107.86077 * 179.97438 * 3 2 1 5 5 N 1.39379 * 126.26188 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00349 * 359.96291 * 5 4 3 7 7 O 1.21614 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.47482 * 120.00411 * 179.97438 * 6 5 4 9 9 C 1.39830 * 120.21243 * 359.73259 * 8 6 5 10 10 C 1.37392 * 120.12083 * 179.85313 * 9 8 6 11 11 C 1.39766 * 120.39305 * 0.58425 * 10 9 8 12 12 C 1.39305 * 119.30027 * 359.46383 * 11 10 9 13 13 C 1.37416 * 120.65504 * 0.31784 * 12 11 10 14 14 C 1.51614 * 107.87897 * 180.52657 * 12 11 10 15 15 C 1.54604 * 102.73001 * 16.01271 * 14 12 11 16 16 N 1.39468 * 129.73960 * 179.23104 * 11 10 9 17 17 C 1.46904 * 110.99841 * 283.72650 * 16 11 10 18 18 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 19 19 C 1.46501 * 126.09680 * 179.97438 * 18 4 3 20 20 C 1.50698 * 109.46943 * 270.02493 * 19 18 4 21 21 H 1.08003 * 120.00367 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00202 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47205 * 89.99989 * 24 22 20 26 26 H 1.48504 * 109.47106 * 210.00165 * 24 22 20 27 27 H 1.48500 * 109.46947 * 330.00090 * 24 22 20 28 28 N 1.30835 * 125.77674 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47010 * 270.02898 * 1 2 3 30 30 H 1.08998 * 109.46435 * 30.02479 * 1 2 3 31 31 H 1.08994 * 109.47526 * 150.02387 * 1 2 3 32 32 H 1.07995 * 126.06663 * 0.02562 * 3 2 1 33 33 H 0.97005 * 120.00418 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.94223 * 0.12624 * 9 8 6 35 35 H 1.08000 * 119.80111 * 180.33813 * 10 9 8 36 36 H 1.08005 * 120.02550 * 179.82089 * 13 12 11 37 37 H 1.08996 * 110.75964 * 134.32491 * 14 12 11 38 38 H 1.09005 * 110.76047 * 257.52213 * 14 12 11 39 39 H 1.09004 * 110.77674 * 92.72284 * 15 14 12 40 40 H 1.09003 * 110.78006 * 215.95794 * 15 14 12 41 41 H 1.09003 * 109.47010 * 299.85634 * 17 16 11 42 42 H 1.09008 * 109.47021 * 59.85313 * 17 16 11 43 43 H 1.09001 * 109.47558 * 179.85487 * 17 16 11 44 44 H 1.09007 * 109.46955 * 30.02131 * 19 18 4 45 45 H 1.08992 * 109.47542 * 150.02203 * 19 18 4 46 46 H 0.97003 * 119.99604 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 0.0006 5 7 4.7497 1.5302 0.0013 6 6 4.6132 2.8710 0.0007 7 8 3.5038 3.3693 0.0000 8 6 5.8091 3.7340 0.0020 9 6 7.0868 3.1660 0.0095 10 6 8.1997 3.9717 0.0077 11 6 8.0654 5.3629 0.0106 12 6 6.7907 5.9248 0.0040 13 6 5.6728 5.1257 0.0013 14 6 6.9468 7.4328 -0.0042 15 6 8.4248 7.6201 -0.4173 16 7 9.0471 6.3534 0.0239 17 6 9.6350 6.4940 1.3628 18 7 3.6088 -0.6434 0.0004 19 6 4.7858 -1.5158 0.0003 20 6 5.1898 -1.8141 -1.4206 21 1 4.6259 -1.3961 -2.2415 22 6 6.2792 -2.6207 -1.6727 23 7 6.9661 -3.1294 -0.6731 24 14 6.7795 -2.9912 -3.4339 25 1 7.7453 -1.9641 -3.9006 26 1 7.4143 -4.3322 -3.4965 27 1 5.5768 -2.9716 -4.3046 28 7 2.2719 -1.0615 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9877 2.1598 0.0004 33 1 5.6346 1.1329 0.0020 34 1 7.1992 2.0919 0.0123 35 1 9.1840 3.5274 0.0080 36 1 4.6893 5.5722 -0.0009 37 1 6.2801 7.8863 -0.7376 38 1 6.7649 7.8455 0.9882 39 1 8.5123 7.7383 -1.4974 40 1 8.8661 8.4719 0.1003 41 1 8.8561 6.7673 2.0747 42 1 10.0858 5.5480 1.6629 43 1 10.3992 7.2710 1.3444 44 1 5.6075 -1.0173 0.5146 45 1 4.5477 -2.4473 0.5135 46 1 7.7323 -3.6971 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778562762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:48 Heat of formation + Delta-G solvation = 68.421100 kcal Electronic energy + Delta-G solvation = -28693.954811 eV Core-core repulsion = 24777.728090 eV Total energy + Delta-G solvation = -3916.226721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51206 -41.87446 -40.57354 -37.62480 -36.35019 -35.65907 -33.86917 -33.44520 -31.66148 -30.71430 -30.19805 -29.48232 -27.81628 -27.05622 -25.21062 -24.59810 -23.56665 -22.36633 -21.94183 -21.33346 -20.56936 -18.93882 -18.65657 -18.05018 -17.57044 -16.96703 -16.73648 -16.64091 -16.40231 -16.28831 -15.65933 -15.58666 -15.07247 -14.87958 -14.56852 -14.45063 -14.31337 -14.06558 -13.97968 -13.80820 -13.63789 -13.41316 -13.38755 -13.13915 -13.03687 -12.91902 -12.76896 -12.71021 -12.32205 -12.14341 -11.99314 -11.93458 -11.71613 -11.51573 -11.05479 -10.76919 -10.58107 -9.98921 -9.65443 -9.18518 -8.95814 -8.37726 -6.55267 -0.42913 0.26068 0.89185 1.27858 1.35137 1.37501 1.48663 1.66278 2.01375 2.14556 2.33572 2.56657 2.68733 2.92501 3.38520 3.48808 3.75130 3.80665 3.92823 4.01441 4.11628 4.18579 4.21683 4.41742 4.46009 4.55866 4.59633 4.69484 4.73189 4.76289 4.80587 4.83667 4.89553 4.91941 4.94339 4.96290 5.02986 5.11451 5.17292 5.20141 5.26204 5.27814 5.49326 5.50091 5.75128 5.84982 5.94423 6.08158 6.10232 6.23592 6.54868 6.86510 6.98948 7.16828 8.68726 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.003307 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.095177 B = 8465.638823 C =10764.682522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.304 4.304 4 C 0.297 3.703 5 N -0.635 5.635 6 C 0.570 3.430 7 O -0.538 6.538 8 C -0.160 4.160 9 C -0.065 4.065 10 C -0.122 4.122 11 C 0.119 3.881 12 C -0.158 4.158 13 C -0.027 4.027 14 C -0.104 4.104 15 C 0.048 3.952 16 N -0.510 5.510 17 C 0.025 3.975 18 N -0.369 5.369 19 C 0.273 3.727 20 C -0.558 4.558 21 H 0.046 0.954 22 C 0.030 3.970 23 N -0.912 5.912 24 Si 0.967 3.033 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.279 1.279 28 N -0.327 5.327 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.029 0.971 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 23.047 3.546 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.336 4.336 4 C 0.075 3.925 5 N -0.282 5.282 6 C 0.360 3.640 7 O -0.415 6.415 8 C -0.164 4.164 9 C -0.084 4.084 10 C -0.142 4.142 11 C 0.021 3.979 12 C -0.161 4.161 13 C -0.046 4.046 14 C -0.142 4.142 15 C -0.078 4.078 16 N -0.226 5.226 17 C -0.120 4.120 18 N -0.155 5.155 19 C 0.154 3.846 20 C -0.596 4.596 21 H 0.064 0.936 22 C -0.172 4.172 23 N -0.550 5.550 24 Si 0.791 3.209 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.204 1.204 28 N -0.152 5.152 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.884 21.869 3.301 22.649 hybrid contribution 0.239 -0.215 -0.326 0.457 sum 5.123 21.654 2.975 22.450 Atomic orbital electron populations 1.20232 0.83744 1.03941 1.03944 1.22893 0.98818 0.89917 0.99046 1.21495 0.88998 1.00927 1.22142 1.18381 0.89329 0.82846 1.01903 1.42768 1.07772 1.05780 1.71887 1.18498 0.89896 0.80323 0.75246 1.90668 1.27237 1.74051 1.49521 1.19402 0.91541 0.93784 1.11673 1.21244 0.90940 1.00591 0.95665 1.20565 0.99559 0.90778 1.03274 1.20012 0.90571 0.92778 0.94502 1.21223 0.92894 0.97767 1.04200 1.20434 0.99223 0.90660 0.94330 1.21770 0.98995 0.89319 1.04137 1.23357 0.91117 0.90579 1.02727 1.59935 1.30448 1.05401 1.26847 1.22586 0.99531 1.04009 0.85844 1.49329 1.06340 1.02636 1.57181 1.19225 0.78592 0.88952 0.97825 1.21405 1.13843 1.32770 0.91587 0.93566 1.25657 0.95307 0.94230 1.02018 1.69990 1.19424 1.32725 1.32824 0.85418 0.78324 0.78347 0.78803 1.18758 1.19747 1.20436 1.77282 0.86352 1.23581 1.27943 0.89118 0.88786 0.90817 0.81371 0.74210 0.84511 0.83472 0.84587 0.88054 0.88566 0.88891 0.86712 0.94331 0.90995 0.88313 0.93559 0.95302 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.24 0.74 -0.98 16 2 C 0.06 2.41 7.20 43.07 0.31 2.72 16 3 C -0.30 -12.93 9.58 22.14 0.21 -12.72 16 4 C 0.30 13.30 7.68 131.19 1.01 14.31 16 5 N -0.63 -24.14 5.36 -311.09 -1.67 -25.81 16 6 C 0.57 19.94 7.73 86.68 0.67 20.61 16 7 O -0.54 -20.86 13.48 -4.08 -0.05 -20.91 16 8 C -0.16 -4.51 5.88 -20.07 -0.12 -4.63 16 9 C -0.07 -1.62 9.52 22.46 0.21 -1.41 16 10 C -0.12 -2.64 10.05 22.44 0.23 -2.42 16 11 C 0.12 2.41 5.57 38.55 0.21 2.62 16 12 C -0.16 -3.18 6.21 -19.51 -0.12 -3.30 16 13 C -0.03 -0.66 9.58 22.46 0.22 -0.45 16 14 C -0.10 -1.30 6.98 30.69 0.21 -1.09 16 15 C 0.05 0.52 6.99 86.66 0.61 1.12 16 16 N -0.51 -8.02 5.31 -713.34 -3.79 -11.80 16 17 C 0.03 0.29 9.28 127.69 1.19 1.47 16 18 N -0.37 -18.29 3.62 -348.33 -1.26 -19.56 16 19 C 0.27 14.36 6.02 85.63 0.52 14.87 16 20 C -0.56 -31.06 9.39 25.60 0.24 -30.82 16 21 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 22 C 0.03 1.60 5.46 84.65 0.46 2.06 16 23 N -0.91 -50.09 13.29 21.45 0.28 -49.81 16 24 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 N -0.33 -15.88 12.56 -47.47 -0.60 -16.48 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.17 6.89 5.82 -2.91 -0.02 6.87 16 33 H 0.42 14.85 6.02 -92.70 -0.56 14.30 16 34 H 0.14 3.30 6.40 -2.91 -0.02 3.28 16 35 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.14 3.28 7.65 -2.91 -0.02 3.26 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 0.62 7.77 -2.39 -0.02 0.60 16 41 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.10 0.70 8.11 -2.39 -0.02 0.68 16 44 H 0.05 2.35 7.52 -2.38 -0.02 2.33 16 45 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -70.61 384.79 2.20 -68.41 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.46 Total: 29.37 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.80 Total: 1.98 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -7.03 Total: -123.45 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.61 2.20 -68.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778562762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.828 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds