Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00186 * 2 1 4 4 C 1.53002 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.51979 * 300.12386 * 4 3 2 6 6 C 1.53118 * 109.52095 * 179.97438 * 4 3 2 7 7 C 1.53037 * 109.27871 * 182.44140 * 6 4 3 8 8 N 1.46842 * 109.52653 * 59.17552 * 7 6 4 9 9 C 1.46891 * 111.00207 * 174.15966 * 8 7 6 10 10 N 1.46503 * 109.47397 * 169.99955 * 9 8 7 11 11 N 1.40157 * 126.15062 * 270.30300 * 10 9 8 12 12 C 1.32245 * 107.76123 * 180.10429 * 11 10 9 13 13 C 1.40118 * 125.92553 * 179.90525 * 12 11 10 14 14 H 1.07998 * 120.00059 * 185.32969 * 13 12 11 15 15 C 1.40038 * 120.00022 * 5.33363 * 13 12 11 16 16 N 1.30800 * 120.00220 * 353.90742 * 15 13 12 17 17 Si 1.86795 * 119.99806 * 173.63216 * 15 13 12 18 18 H 1.48506 * 109.47336 * 94.98329 * 17 15 13 19 19 H 1.48503 * 109.47168 * 214.98345 * 17 15 13 20 20 H 1.48497 * 109.47272 * 334.98141 * 17 15 13 21 21 N 1.38496 * 108.14227 * 359.64294 * 12 11 10 22 22 C 1.46503 * 125.82922 * 180.22971 * 21 12 11 23 23 C 1.34722 * 108.33453 * 0.22933 * 21 12 11 24 24 S 1.71200 * 125.97609 * 179.97438 * 23 21 12 25 25 C 1.46844 * 111.19844 * 298.26309 * 8 7 6 26 26 C 1.53042 * 109.52852 * 61.74002 * 25 8 7 27 27 H 1.09000 * 109.46664 * 300.00005 * 1 2 3 28 28 H 1.09001 * 109.46910 * 60.00191 * 1 2 3 29 29 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47193 * 59.99863 * 3 2 1 31 31 H 1.08999 * 109.46529 * 299.99988 * 3 2 1 32 32 H 1.08996 * 109.47548 * 299.87534 * 5 4 3 33 33 H 1.09000 * 109.47270 * 59.87895 * 5 4 3 34 34 H 1.09010 * 109.46979 * 179.87385 * 5 4 3 35 35 H 1.09006 * 109.50159 * 62.49709 * 6 4 3 36 36 H 1.09008 * 109.50216 * 302.38080 * 6 4 3 37 37 H 1.09009 * 109.46018 * 299.16379 * 7 6 4 38 38 H 1.08998 * 109.46224 * 179.19676 * 7 6 4 39 39 H 1.09004 * 109.47155 * 50.00410 * 9 8 7 40 40 H 1.09001 * 109.47546 * 290.00562 * 9 8 7 41 41 H 0.97000 * 120.00227 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.47231 * 90.00094 * 22 21 12 43 43 H 1.09003 * 109.46705 * 209.99952 * 22 21 12 44 44 H 1.09002 * 109.47262 * 329.99917 * 22 21 12 45 45 H 1.09006 * 109.45977 * 181.75371 * 25 8 7 46 46 H 1.08995 * 109.46222 * 301.72194 * 25 8 7 47 47 H 1.08991 * 109.50693 * 180.87908 * 26 25 8 48 48 H 1.09004 * 109.49827 * 60.75323 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9885 0.4226 1.2463 6 6 4.1596 2.5829 -0.0013 7 6 5.6834 2.4561 -0.0635 8 7 6.0662 1.7291 -1.2805 9 6 7.5258 1.7087 -1.4445 10 7 7.8832 0.7837 -2.5229 11 7 8.1514 -0.5849 -2.3834 12 6 8.4353 -1.0647 -3.5826 13 6 8.7636 -2.3941 -3.8796 14 1 9.0630 -2.6655 -4.8811 15 6 8.7035 -3.3707 -2.8778 16 7 8.4575 -3.0245 -1.6407 17 14 8.9670 -5.1689 -3.3096 18 1 10.3896 -5.5293 -3.0823 19 1 8.0988 -6.0160 -2.4529 20 1 8.6220 -5.3910 -4.7367 21 7 8.3460 -0.0263 -4.4947 22 6 8.5795 -0.1296 -5.9373 23 6 8.0077 1.0949 -3.8287 24 16 7.7768 2.6441 -4.5197 25 6 5.5175 0.3670 -1.2802 26 6 3.9886 0.4314 -1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.6695 0.9623 2.1379 33 1 3.5438 -0.5726 1.2455 34 1 5.0751 0.3350 1.2439 35 1 3.8750 3.1088 0.9101 36 1 3.8050 3.1392 -0.8690 37 1 6.0385 1.9116 0.8116 38 1 6.1302 3.4501 -0.0785 39 1 7.9912 1.3804 -0.5151 40 1 7.8776 2.7099 -1.6931 41 1 8.4155 -3.7010 -0.9469 42 1 7.6427 -0.3688 -6.4408 43 1 8.9614 0.8199 -6.3124 44 1 9.3079 -0.9167 -6.1321 45 1 5.8438 -0.1562 -2.1791 46 1 5.8733 -0.1676 -0.3995 47 1 3.5820 -0.5797 -1.2384 48 1 3.6314 0.9540 -2.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794639312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 37.002256 kcal Electronic energy + Delta-G solvation = -29026.902760 eV Core-core repulsion = 25244.757567 eV Total energy + Delta-G solvation = -3782.145193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93508 -39.67393 -37.60899 -35.34577 -34.05788 -33.32985 -30.75530 -30.61192 -28.70234 -27.41000 -26.95601 -26.58088 -25.71230 -24.06347 -22.96632 -21.81401 -21.03994 -20.77708 -18.24029 -17.68086 -16.73713 -16.44367 -16.21797 -15.88059 -15.69770 -15.34370 -14.93787 -14.83148 -14.68820 -14.22061 -14.13338 -13.70877 -13.49926 -13.22287 -12.95036 -12.49329 -12.22794 -12.16793 -11.91647 -11.82272 -11.81113 -11.59081 -11.55537 -11.43897 -11.37500 -11.07901 -10.90044 -10.63554 -10.49459 -10.38385 -10.23139 -10.03677 -9.97511 -9.69074 -9.54840 -9.19532 -8.89213 -7.89555 -7.07330 -6.69280 -6.64037 -5.16010 2.35065 2.61722 2.76400 2.90154 2.94265 3.41348 3.50879 3.63792 3.69307 4.07725 4.31024 4.78119 4.79308 4.81701 4.94810 5.15247 5.19380 5.25477 5.31934 5.37414 5.42319 5.50588 5.56105 5.57177 5.60371 5.67277 5.73929 5.84429 5.86571 5.87302 5.99646 6.10011 6.11575 6.16501 6.21627 6.23461 6.31828 6.50158 6.57258 6.61654 6.67172 6.79291 7.00647 7.10119 7.26755 7.31839 7.63300 7.81329 8.22511 8.33573 9.13795 9.89958 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.004141 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.380972 B = 6759.654336 C = 8536.054092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.074 3.926 4 C -0.059 4.059 5 C -0.139 4.139 6 C -0.101 4.101 7 C 0.063 3.937 8 N -0.543 5.543 9 C 0.330 3.670 10 N -0.383 5.383 11 N -0.344 5.344 12 C 0.375 3.625 13 C -0.438 4.438 14 H 0.097 0.903 15 C 0.078 3.922 16 N -0.736 5.736 17 Si 0.927 3.073 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.258 1.258 21 N -0.518 5.518 22 C 0.101 3.899 23 C 0.480 3.520 24 S -0.703 6.703 25 C 0.063 3.937 26 C -0.097 4.097 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.285 0.715 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 1.288 5.697 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.003 4.003 4 C -0.059 4.059 5 C -0.196 4.196 6 C -0.139 4.139 7 C -0.065 4.065 8 N -0.270 5.270 9 C 0.118 3.882 10 N -0.169 5.169 11 N -0.176 5.176 12 C 0.126 3.874 13 C -0.479 4.479 14 H 0.115 0.885 15 C -0.149 4.149 16 N -0.360 5.360 17 Si 0.750 3.250 18 H -0.192 1.192 19 H -0.197 1.197 20 H -0.182 1.182 21 N -0.219 5.219 22 C -0.042 4.042 23 C 0.112 3.888 24 S -0.579 6.579 25 C -0.065 4.065 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.201 2.032 6.213 11.286 hybrid contribution 0.356 -1.666 0.107 1.707 sum -8.844 0.366 6.320 10.876 Atomic orbital electron populations 1.22705 0.81605 1.02518 0.99651 1.87910 1.19064 1.28031 1.95306 1.22593 0.93589 0.84410 0.99710 1.20624 0.92186 0.96160 0.96910 1.21872 1.01442 1.00509 0.95794 1.21546 0.94746 0.95508 1.02067 1.21953 0.95757 0.98629 0.90196 1.62150 1.09930 1.17450 1.37463 1.21771 0.87683 0.92132 0.86616 1.49090 1.53854 1.09575 1.04367 1.79379 1.38620 0.84058 1.15542 1.21272 0.93701 0.89871 0.82511 1.18358 1.43512 0.87562 0.98484 0.88483 1.25820 0.93098 1.01906 0.94058 1.69875 1.29033 1.36378 1.00747 0.85976 0.79234 0.79810 0.80013 1.19175 1.19727 1.18198 1.45994 1.58985 1.07365 1.09568 1.21746 1.02190 1.04021 0.76279 1.22891 0.88510 0.91783 0.85619 1.92720 1.80020 1.07366 1.77770 1.22053 0.93838 0.88256 1.02355 1.21541 0.95173 1.00362 0.96365 0.94439 0.94249 0.89840 0.93644 0.93321 0.93311 0.91962 0.92272 0.91543 0.90743 0.94503 0.90462 0.92239 0.87150 0.90391 0.91480 0.89220 0.89877 0.90021 0.94202 0.91144 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.95 9.42 -35.23 -0.33 -5.28 16 3 C 0.07 0.86 4.81 37.16 0.18 1.04 16 4 C -0.06 -0.77 0.60 -154.39 -0.09 -0.86 16 5 C -0.14 -1.80 7.76 37.16 0.29 -1.51 16 6 C -0.10 -1.23 4.88 -26.65 -0.13 -1.36 16 7 C 0.06 0.87 5.18 -3.84 -0.02 0.85 16 8 N -0.54 -9.65 4.88 -238.58 -1.16 -10.81 16 9 C 0.33 6.41 6.22 -63.32 -0.39 6.01 16 10 N -0.38 -8.80 2.65 -65.05 -0.17 -8.98 16 11 N -0.34 -8.56 9.49 31.21 0.30 -8.27 16 12 C 0.38 9.13 7.50 -155.27 -1.16 7.96 16 13 C -0.44 -10.08 8.99 -38.20 -0.34 -10.43 16 14 H 0.10 2.02 7.08 -52.49 -0.37 1.65 16 15 C 0.08 1.73 5.49 -17.32 -0.10 1.64 16 16 N -0.74 -17.48 11.93 55.55 0.66 -16.82 16 17 Si 0.93 16.50 29.56 -169.99 -5.03 11.48 16 18 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 21 N -0.52 -11.75 3.17 -124.65 -0.39 -12.14 16 22 C 0.10 1.81 10.66 59.85 0.64 2.45 16 23 C 0.48 11.48 7.84 -86.93 -0.68 10.80 16 24 S -0.70 -17.50 29.49 -107.50 -3.17 -20.67 16 25 C 0.06 1.18 4.73 -3.83 -0.02 1.16 16 26 C -0.10 -1.57 4.71 -26.65 -0.13 -1.69 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 34 H 0.06 0.83 4.93 -51.92 -0.26 0.58 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.04 0.50 6.52 -51.92 -0.34 0.16 16 38 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 2.13 7.64 -51.93 -0.40 1.73 16 41 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 44 H 0.08 1.31 7.27 -51.93 -0.38 0.93 16 45 H 0.08 1.89 6.18 -51.93 -0.32 1.57 16 46 H 0.04 0.79 6.51 -51.93 -0.34 0.45 16 47 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -29.82 387.40 -12.11 -41.93 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.80 Total: 6.25 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -0.85 Total: 17.47 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.77 Total: -57.02 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.33 Total: -5.28 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: -17.50 SS G_CDS: -3.17 Total: -20.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.82 -12.11 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794639312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.933 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds