Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00186 * 2 1 4 4 C 1.53002 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.51979 * 300.12386 * 4 3 2 6 6 C 1.53118 * 109.52095 * 179.97438 * 4 3 2 7 7 C 1.53037 * 109.27871 * 182.44140 * 6 4 3 8 8 N 1.46842 * 109.52653 * 59.17552 * 7 6 4 9 9 C 1.46891 * 111.00207 * 174.15966 * 8 7 6 10 10 N 1.46503 * 109.47397 * 169.99955 * 9 8 7 11 11 N 1.40157 * 126.15062 * 270.30300 * 10 9 8 12 12 C 1.32245 * 107.76123 * 180.10429 * 11 10 9 13 13 C 1.40118 * 125.92553 * 179.90525 * 12 11 10 14 14 H 1.07998 * 120.00059 * 185.32969 * 13 12 11 15 15 C 1.40038 * 120.00022 * 5.33363 * 13 12 11 16 16 N 1.30800 * 120.00220 * 353.90742 * 15 13 12 17 17 Si 1.86795 * 119.99806 * 173.63216 * 15 13 12 18 18 H 1.48506 * 109.47336 * 94.98329 * 17 15 13 19 19 H 1.48503 * 109.47168 * 214.98345 * 17 15 13 20 20 H 1.48497 * 109.47272 * 334.98141 * 17 15 13 21 21 N 1.38496 * 108.14227 * 359.64294 * 12 11 10 22 22 C 1.46503 * 125.82922 * 180.22971 * 21 12 11 23 23 C 1.34722 * 108.33453 * 0.22933 * 21 12 11 24 24 S 1.71200 * 125.97609 * 179.97438 * 23 21 12 25 25 C 1.46844 * 111.19844 * 298.26309 * 8 7 6 26 26 C 1.53042 * 109.52852 * 61.74002 * 25 8 7 27 27 H 1.09000 * 109.46664 * 300.00005 * 1 2 3 28 28 H 1.09001 * 109.46910 * 60.00191 * 1 2 3 29 29 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47193 * 59.99863 * 3 2 1 31 31 H 1.08999 * 109.46529 * 299.99988 * 3 2 1 32 32 H 1.08996 * 109.47548 * 299.87534 * 5 4 3 33 33 H 1.09000 * 109.47270 * 59.87895 * 5 4 3 34 34 H 1.09010 * 109.46979 * 179.87385 * 5 4 3 35 35 H 1.09006 * 109.50159 * 62.49709 * 6 4 3 36 36 H 1.09008 * 109.50216 * 302.38080 * 6 4 3 37 37 H 1.09009 * 109.46018 * 299.16379 * 7 6 4 38 38 H 1.08998 * 109.46224 * 179.19676 * 7 6 4 39 39 H 1.09004 * 109.47155 * 50.00410 * 9 8 7 40 40 H 1.09001 * 109.47546 * 290.00562 * 9 8 7 41 41 H 0.97000 * 120.00227 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.47231 * 90.00094 * 22 21 12 43 43 H 1.09003 * 109.46705 * 209.99952 * 22 21 12 44 44 H 1.09002 * 109.47262 * 329.99917 * 22 21 12 45 45 H 1.09006 * 109.45977 * 181.75371 * 25 8 7 46 46 H 1.08995 * 109.46222 * 301.72194 * 25 8 7 47 47 H 1.08991 * 109.50693 * 180.87908 * 26 25 8 48 48 H 1.09004 * 109.49827 * 60.75323 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9885 0.4226 1.2463 6 6 4.1596 2.5829 -0.0013 7 6 5.6834 2.4561 -0.0635 8 7 6.0662 1.7291 -1.2805 9 6 7.5258 1.7087 -1.4445 10 7 7.8832 0.7837 -2.5229 11 7 8.1514 -0.5849 -2.3834 12 6 8.4353 -1.0647 -3.5826 13 6 8.7636 -2.3941 -3.8796 14 1 9.0630 -2.6655 -4.8811 15 6 8.7035 -3.3707 -2.8778 16 7 8.4575 -3.0245 -1.6407 17 14 8.9670 -5.1689 -3.3096 18 1 10.3896 -5.5293 -3.0823 19 1 8.0988 -6.0160 -2.4529 20 1 8.6220 -5.3910 -4.7367 21 7 8.3460 -0.0263 -4.4947 22 6 8.5795 -0.1296 -5.9373 23 6 8.0077 1.0949 -3.8287 24 16 7.7768 2.6441 -4.5197 25 6 5.5175 0.3670 -1.2802 26 6 3.9886 0.4314 -1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.6695 0.9623 2.1379 33 1 3.5438 -0.5726 1.2455 34 1 5.0751 0.3350 1.2439 35 1 3.8750 3.1088 0.9101 36 1 3.8050 3.1392 -0.8690 37 1 6.0385 1.9116 0.8116 38 1 6.1302 3.4501 -0.0785 39 1 7.9912 1.3804 -0.5151 40 1 7.8776 2.7099 -1.6931 41 1 8.4155 -3.7010 -0.9469 42 1 7.6427 -0.3688 -6.4408 43 1 8.9614 0.8199 -6.3124 44 1 9.3079 -0.9167 -6.1321 45 1 5.8438 -0.1562 -2.1791 46 1 5.8733 -0.1676 -0.3995 47 1 3.5820 -0.5797 -1.2384 48 1 3.6314 0.9540 -2.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794639312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 21.039289 kcal Electronic energy + Delta-G solvation = -29027.594966 eV Core-core repulsion = 25244.757567 eV Total energy + Delta-G solvation = -3782.837399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70473 -40.88035 -38.66039 -36.78278 -35.76599 -34.82162 -32.47426 -31.90567 -30.14051 -28.38891 -28.31324 -28.23758 -26.74230 -25.52037 -24.30734 -23.28977 -22.70393 -22.33924 -19.57794 -19.25988 -18.44265 -17.75996 -17.44279 -17.24129 -16.90925 -16.61035 -16.46706 -16.43974 -16.02707 -15.51984 -15.48445 -15.08252 -14.75832 -14.45481 -14.21202 -13.88590 -13.72396 -13.46723 -13.27258 -13.19044 -13.08403 -12.92682 -12.79791 -12.67549 -12.59347 -12.43933 -12.32513 -12.11366 -12.02064 -11.75451 -11.53452 -11.40034 -11.31096 -11.20333 -10.88724 -10.67452 -10.56018 -9.34103 -8.81552 -8.62604 -8.56529 -6.98353 0.52565 0.81956 1.26364 1.43220 1.58810 1.66206 1.84090 2.11280 2.41163 2.84060 2.84844 3.07226 3.58805 3.68428 3.72011 3.89688 4.04920 4.11401 4.20599 4.26945 4.32046 4.40009 4.44143 4.44648 4.51448 4.54901 4.58985 4.64743 4.68683 4.71793 4.73852 4.76907 4.84628 4.88918 4.94080 4.99001 5.07543 5.08847 5.12254 5.22835 5.26161 5.26939 5.47212 5.68714 5.85792 5.94735 6.22677 6.28400 6.47221 6.55574 7.31331 8.22072 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.004141 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.380972 B = 6759.654336 C = 8536.054092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.076 3.924 4 C -0.055 4.055 5 C -0.132 4.132 6 C -0.094 4.094 7 C 0.058 3.942 8 N -0.548 5.548 9 C 0.326 3.674 10 N -0.378 5.378 11 N -0.369 5.369 12 C 0.354 3.646 13 C -0.452 4.452 14 H 0.118 0.882 15 C 0.038 3.962 16 N -0.774 5.774 17 Si 1.003 2.997 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.247 1.247 21 N -0.519 5.519 22 C 0.095 3.905 23 C 0.468 3.532 24 S -0.734 6.734 25 C 0.081 3.919 26 C -0.087 4.087 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.291 0.709 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 0.896 6.368 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.000 4.000 4 C -0.055 4.055 5 C -0.189 4.189 6 C -0.132 4.132 7 C -0.069 4.069 8 N -0.276 5.276 9 C 0.115 3.885 10 N -0.164 5.164 11 N -0.201 5.201 12 C 0.106 3.894 13 C -0.493 4.493 14 H 0.136 0.864 15 C -0.185 4.185 16 N -0.398 5.398 17 Si 0.822 3.178 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.170 1.170 21 N -0.219 5.219 22 C -0.046 4.046 23 C 0.098 3.902 24 S -0.610 6.610 25 C -0.047 4.047 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.074 1.665 6.879 12.312 hybrid contribution 0.620 -1.581 -0.062 1.699 sum -9.455 0.083 6.817 11.657 Atomic orbital electron populations 1.22879 0.79869 1.03443 1.00758 1.87875 1.21065 1.28759 1.95538 1.22572 0.92079 0.84378 1.00993 1.20601 0.93744 0.96231 0.94902 1.21792 1.00193 1.00155 0.96754 1.21549 0.92984 0.94946 1.03682 1.22176 0.97358 0.98826 0.88531 1.62186 1.08581 1.16789 1.40018 1.21950 0.89044 0.91518 0.85994 1.49382 1.52869 1.09381 1.04772 1.79309 1.39363 0.84899 1.16555 1.21673 0.94192 0.90716 0.82852 1.18909 1.43274 0.87307 0.99835 0.86399 1.26848 0.91963 1.06220 0.93512 1.69969 1.29610 1.38205 1.02035 0.84847 0.79184 0.73656 0.80120 1.18473 1.19801 1.16976 1.46268 1.58212 1.06504 1.10951 1.22027 1.03564 1.04975 0.74032 1.22856 0.89446 0.91843 0.86105 1.92627 1.81671 1.08555 1.78159 1.21740 0.95499 0.88390 0.99096 1.21418 0.93015 1.00072 0.97966 0.92704 0.93685 0.89156 0.91083 0.93187 0.90710 0.93383 0.93892 0.87912 0.91187 0.93840 0.88759 0.91788 0.86997 0.89844 0.90269 0.89174 0.87444 0.94860 0.95752 0.92546 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.12 9.42 -148.98 -1.40 -11.52 16 3 C 0.08 1.63 4.81 71.98 0.35 1.97 16 4 C -0.05 -1.36 0.60 -52.10 -0.03 -1.39 16 5 C -0.13 -3.26 7.76 71.98 0.56 -2.70 16 6 C -0.09 -2.07 4.88 30.65 0.15 -1.92 16 7 C 0.06 1.54 5.18 86.33 0.45 1.98 16 8 N -0.55 -19.85 4.88 -908.73 -4.43 -24.28 16 9 C 0.33 13.02 6.22 170.81 1.06 14.08 16 10 N -0.38 -18.01 2.65 -359.72 -0.95 -18.96 16 11 N -0.37 -18.99 9.49 -55.17 -0.52 -19.52 16 12 C 0.35 17.54 7.50 133.52 1.00 18.54 16 13 C -0.45 -20.74 8.99 23.16 0.21 -20.53 16 14 H 0.12 4.73 7.08 -2.91 -0.02 4.71 16 15 C 0.04 1.67 5.49 85.28 0.47 2.14 16 16 N -0.77 -37.35 11.93 21.84 0.26 -37.09 16 17 Si 1.00 32.87 29.56 68.60 2.03 34.90 16 18 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 19 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.25 -7.58 7.11 99.48 0.71 -6.87 16 21 N -0.52 -23.87 3.17 -548.29 -1.74 -25.61 16 22 C 0.10 3.39 10.66 127.77 1.36 4.75 16 23 C 0.47 22.93 7.84 179.06 1.40 24.33 16 24 S -0.73 -37.11 29.49 -56.49 -1.67 -38.77 16 25 C 0.08 3.19 4.73 86.33 0.41 3.60 16 26 C -0.09 -2.90 4.71 30.65 0.14 -2.76 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.32 7.68 -2.39 -0.02 1.30 16 34 H 0.04 1.19 4.93 -2.38 -0.01 1.18 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 37 H 0.04 1.12 6.52 -2.38 -0.02 1.10 16 38 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 39 H 0.06 2.46 8.08 -2.39 -0.02 2.44 16 40 H 0.11 4.41 7.64 -2.39 -0.02 4.39 16 41 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 42 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.09 3.19 7.61 -2.39 -0.02 3.17 16 44 H 0.11 3.24 7.27 -2.39 -0.02 3.22 16 45 H 0.03 1.63 6.18 -2.38 -0.01 1.61 16 46 H 0.02 1.02 6.51 -2.39 -0.02 1.00 16 47 H 0.06 2.01 7.77 -2.39 -0.02 1.99 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -66.69 387.40 1.30 -65.39 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.95 Total: 31.66 kcal Atomic # 6 Polarization: 35.04 SS G_CDS: 8.78 Total: 43.81 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -7.38 Total: -125.46 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.40 Total: -11.52 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.90 kcal Atomic # 16 Polarization: -37.11 SS G_CDS: -1.67 Total: -38.77 kcal Total: -66.69 1.30 -65.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794639312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.430 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds