Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47065 * 270.41950 * 3 2 1 5 5 C 1.37094 * 120.00187 * 263.65169 * 4 3 2 6 6 H 1.08008 * 119.99820 * 142.45626 * 5 4 3 7 7 C 1.38941 * 120.00413 * 322.45940 * 5 4 3 8 8 N 1.31418 * 120.00192 * 157.41387 * 7 5 4 9 9 Si 1.86800 * 120.00090 * 337.41300 * 7 5 4 10 10 H 1.48506 * 109.46915 * 95.70597 * 9 7 5 11 11 H 1.48498 * 109.47286 * 215.70826 * 9 7 5 12 12 H 1.48501 * 109.46883 * 335.70913 * 9 7 5 13 13 C 1.34780 * 120.00003 * 83.66342 * 4 3 2 14 14 O 1.21293 * 120.00094 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99755 * 359.97438 * 13 4 3 16 16 C 1.50695 * 109.46907 * 180.02562 * 15 13 4 17 17 C 1.38807 * 120.18036 * 90.00486 * 16 15 13 18 18 C 1.50703 * 119.20186 * 359.94729 * 17 16 15 19 19 N 1.31506 * 121.58909 * 179.97438 * 17 16 15 20 20 C 1.32757 * 121.47520 * 359.97438 * 19 17 16 21 21 C 1.40909 * 119.85424 * 0.29770 * 20 19 17 22 22 C 1.45856 * 106.45795 * 180.16956 * 21 20 19 23 23 C 1.50708 * 126.17220 * 179.84282 * 22 21 20 24 24 N 1.30235 * 107.65625 * 359.57816 * 22 21 20 25 25 N 1.36825 * 133.57705 * 179.97438 * 20 19 17 26 26 C 1.46498 * 125.39073 * 0.02562 * 25 20 19 27 27 C 1.37023 * 120.17827 * 269.97717 * 16 15 13 28 28 C 1.50698 * 120.91821 * 0.02562 * 27 16 15 29 29 H 4.40631 * 5.51517 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46740 * 150.42169 * 3 2 1 31 31 H 1.08996 * 109.47263 * 30.42635 * 3 2 1 32 32 H 0.97001 * 120.00149 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47049 * 60.00426 * 15 13 4 34 34 H 1.09003 * 109.47209 * 300.00417 * 15 13 4 35 35 H 1.08996 * 109.47372 * 270.02530 * 18 17 16 36 36 H 1.08997 * 109.46892 * 30.02980 * 18 17 16 37 37 H 1.09005 * 109.46289 * 150.02605 * 18 17 16 38 38 H 1.09001 * 109.46742 * 269.71870 * 23 22 21 39 39 H 1.08996 * 109.46914 * 29.71012 * 23 22 21 40 40 H 1.08996 * 109.47440 * 149.71674 * 23 22 21 41 41 H 1.09004 * 109.46985 * 270.02940 * 26 25 20 42 42 H 1.09000 * 109.47043 * 30.02339 * 26 25 20 43 43 H 1.08992 * 109.47177 * 150.02949 * 26 25 20 44 44 H 1.09000 * 109.47151 * 89.99778 * 28 27 16 45 45 H 1.09001 * 109.47793 * 210.00215 * 28 27 16 46 46 H 1.08999 * 109.47470 * 330.00253 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0092 1.3811 5 6 3.4860 1.1664 1.9923 6 1 3.2660 1.3179 3.0388 7 6 4.1254 2.1631 1.2655 8 7 4.0721 3.4111 1.6738 9 14 5.0609 1.7293 -0.2920 10 1 4.1849 1.9441 -1.4717 11 1 6.2633 2.5936 -0.4043 12 1 5.4783 0.3051 -0.2382 13 6 3.2380 -1.1742 2.0509 14 8 3.6427 -1.1825 3.1943 15 6 2.8510 -2.4666 1.3792 16 6 3.0583 -3.6119 2.3364 17 6 2.0298 -4.0127 3.1780 18 6 0.7093 -3.2887 3.1219 19 7 2.1802 -5.0087 4.0235 20 6 3.3237 -5.6775 4.1104 21 6 4.4105 -5.3184 3.2886 22 6 5.4979 -6.2328 3.6186 23 6 6.8705 -6.2440 2.9964 24 7 5.0706 -7.0342 4.5520 25 7 3.7464 -6.7269 4.8800 26 6 2.9395 -7.4191 5.8879 27 6 4.2628 -4.2636 2.3802 28 6 5.3989 -3.8524 1.4795 29 1 -1.0500 0.0002 0.0001 30 1 3.0088 0.8946 -0.5073 31 1 3.0097 -0.8853 -0.5204 32 1 4.5188 4.1069 1.1666 33 1 3.4698 -2.6156 0.4944 34 1 1.8020 -2.4238 1.0860 35 1 0.7214 -2.4559 3.8250 36 1 0.5451 -2.9101 2.1131 37 1 -0.0936 -3.9765 3.3871 38 1 6.8709 -6.9048 2.1295 39 1 7.1357 -5.2342 2.6835 40 1 7.5973 -6.6012 3.7259 41 1 3.0692 -6.9319 6.8544 42 1 1.8888 -7.3817 5.6004 43 1 3.2601 -8.4583 5.9590 44 1 6.0028 -3.0949 1.9791 45 1 6.0179 -4.7212 1.2556 46 1 4.9977 -3.4435 0.5522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798804460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = 113.964752 kcal Electronic energy + Delta-G solvation = -29921.940077 eV Core-core repulsion = 26007.688277 eV Total energy + Delta-G solvation = -3914.251800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.74390 -40.90102 -39.47568 -37.12122 -36.16294 -34.62554 -34.13416 -33.60466 -33.24249 -30.78468 -29.96879 -28.70161 -28.38287 -28.10168 -26.80892 -25.62502 -22.90182 -22.55975 -20.70589 -20.46838 -20.10948 -18.67468 -18.45835 -17.91257 -17.73976 -17.30149 -16.93929 -16.70296 -16.05162 -15.61568 -15.14715 -14.87570 -14.82070 -14.63146 -14.57782 -14.53308 -14.34824 -14.13451 -14.03114 -13.82204 -13.77369 -13.51122 -13.44999 -13.39043 -13.19492 -12.80315 -12.61109 -12.51871 -12.41976 -12.27278 -11.96446 -11.80527 -11.32574 -11.11122 -11.01692 -10.93589 -10.50403 -10.38096 -9.83589 -9.77737 -9.09178 -8.48552 -6.12639 -0.26943 0.22538 1.14890 1.23164 1.34351 1.35786 1.48684 1.74669 1.98097 2.01388 2.21863 2.55030 2.94391 3.03416 3.05325 3.23990 3.46967 3.56072 3.65447 3.81243 3.99390 4.03426 4.10720 4.27499 4.30430 4.33214 4.35839 4.42822 4.47287 4.51877 4.57386 4.60807 4.67765 4.70041 4.75626 4.82197 4.88068 4.94003 5.03442 5.16638 5.17505 5.32604 5.38749 5.53496 5.66258 5.84043 6.06462 6.42244 6.54778 6.79798 6.88185 6.96068 7.28691 7.87215 8.68810 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.003634 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.454790 B = 7703.117202 C = 8643.626122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.234 4.234 3 C 0.188 3.812 4 N -0.473 5.473 5 C -0.333 4.333 6 H 0.038 0.962 7 C 0.011 3.989 8 N -0.912 5.912 9 Si 0.937 3.063 10 H -0.240 1.240 11 H -0.288 1.288 12 H -0.237 1.237 13 C 0.476 3.524 14 O -0.602 6.602 15 C -0.083 4.083 16 C -0.167 4.167 17 C 0.203 3.797 18 C -0.104 4.104 19 N -0.529 5.529 20 C 0.294 3.706 21 C -0.250 4.250 22 C 0.115 3.885 23 C -0.079 4.079 24 N -0.268 5.268 25 N -0.409 5.409 26 C 0.110 3.890 27 C 0.050 3.950 28 C -0.129 4.129 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.279 0.721 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -20.180 -7.219 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.235 4.235 3 C 0.066 3.934 4 N -0.194 5.194 5 C -0.461 4.461 6 H 0.056 0.944 7 C -0.191 4.191 8 N -0.549 5.549 9 Si 0.758 3.242 10 H -0.165 1.165 11 H -0.215 1.215 12 H -0.159 1.159 13 C 0.266 3.734 14 O -0.485 6.485 15 C -0.123 4.123 16 C -0.172 4.172 17 C 0.055 3.945 18 C -0.161 4.161 19 N -0.246 5.246 20 C 0.055 3.945 21 C -0.260 4.260 22 C -0.063 4.063 23 C -0.137 4.137 24 N -0.083 5.083 25 N -0.200 5.200 26 C -0.030 4.030 27 C 0.040 3.960 28 C -0.184 4.184 29 H 0.269 0.731 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.125 0.875 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.497 -21.373 -5.148 22.036 hybrid contribution 0.399 1.682 -0.413 1.777 sum -1.098 -19.691 -5.561 20.491 Atomic orbital electron populations 1.25697 0.96514 0.99633 0.97569 1.23766 0.95266 1.01811 1.02692 1.19054 0.85315 1.04270 0.84754 1.43742 1.57743 1.05306 1.12652 1.18548 1.39491 0.91972 0.96048 0.94381 1.26206 0.96369 0.93850 1.02670 1.69899 1.41303 1.00872 1.42839 0.85996 0.78786 0.80671 0.78708 1.16461 1.21493 1.15931 1.21005 0.80065 0.85195 0.87091 1.90570 1.50187 1.87247 1.20451 1.20651 1.05569 0.88022 0.98021 1.19626 0.94969 0.99876 1.02701 1.21347 0.96747 0.88927 0.87495 1.20880 0.91700 0.99444 1.04101 1.66541 1.23083 1.10673 1.24310 1.19261 0.91381 0.91125 0.92705 1.20457 0.96468 1.03815 1.05212 1.24055 0.97419 0.91046 0.93782 1.20617 0.86400 1.05243 1.01443 1.76547 0.91876 1.23008 1.16826 1.48241 1.09418 1.27657 1.34676 1.21959 0.94214 0.98080 0.88711 1.19634 0.94802 0.89410 0.92119 1.21166 0.95524 1.03342 0.98414 0.73056 0.89785 0.85241 0.91101 0.85374 0.86360 0.91531 0.88307 0.88679 0.87219 0.88666 0.89060 0.91048 0.88966 0.87573 0.90807 0.87545 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 19.25 74.32 1.43 -3.32 16 2 C -0.23 -7.75 12.90 31.12 0.40 -7.35 16 3 C 0.19 6.70 4.27 84.57 0.36 7.06 16 4 N -0.47 -21.76 2.15 -645.43 -1.39 -23.15 16 5 C -0.33 -19.16 9.35 84.04 0.79 -18.38 16 6 H 0.04 2.63 7.91 -2.91 -0.02 2.60 16 7 C 0.01 0.61 5.26 84.92 0.45 1.05 16 8 N -0.91 -53.75 13.96 21.66 0.30 -53.45 16 9 Si 0.94 38.71 25.06 68.60 1.72 40.43 16 10 H -0.24 -8.63 6.69 99.48 0.67 -7.96 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.24 -8.83 7.11 99.48 0.71 -8.12 16 13 C 0.48 20.93 7.55 87.66 0.66 21.59 16 14 O -0.60 -32.83 15.90 -3.07 -0.05 -32.88 16 15 C -0.08 -2.55 3.63 29.10 0.11 -2.44 16 16 C -0.17 -5.54 4.35 -20.02 -0.09 -5.63 16 17 C 0.20 6.89 6.78 42.74 0.29 7.18 16 18 C -0.10 -2.94 9.74 71.24 0.69 -2.25 16 19 N -0.53 -18.82 10.30 -181.04 -1.86 -20.69 16 20 C 0.29 10.26 7.97 134.12 1.07 11.33 16 21 C -0.25 -8.10 6.16 -20.23 -0.12 -8.22 16 22 C 0.11 3.13 7.44 44.77 0.33 3.46 16 23 C -0.08 -1.31 9.37 71.24 0.67 -0.64 16 24 N -0.27 -7.91 12.40 -43.74 -0.54 -8.45 16 25 N -0.41 -12.49 4.04 -366.56 -1.48 -13.97 16 26 C 0.11 2.37 11.44 127.77 1.46 3.83 16 27 C 0.05 1.56 5.91 -19.73 -0.12 1.45 16 28 C -0.13 -3.01 8.81 71.24 0.63 -2.38 16 29 H 0.25 4.30 7.80 -4.42 -0.03 4.27 16 30 H 0.08 3.19 3.64 -2.39 -0.01 3.18 16 31 H 0.13 3.34 6.71 -2.39 -0.02 3.32 16 32 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.13 3.01 5.30 -2.39 -0.01 3.00 16 34 H 0.12 3.11 5.24 -2.39 -0.01 3.10 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.36 5.89 -2.39 -0.01 2.35 16 37 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.44 6.26 -2.39 -0.01 1.43 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 43 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.11 1.75 5.92 -2.39 -0.01 1.74 16 46 H 0.09 1.84 6.04 -2.39 -0.01 1.82 16 Total: -1.00 -85.01 379.03 6.69 -78.32 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.99 Total: 27.48 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 9.01 Total: 6.34 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -4.98 Total: -119.70 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.05 Total: -32.88 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.72 Total: 40.43 kcal Total: -85.01 6.69 -78.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.289 kcal (2) G-P(sol) polarization free energy of solvation -85.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds