Wall clock time and date at job start Sat Apr 11 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32156 * 119.99857 * 2 1 4 4 C 1.32120 * 119.99775 * 180.02562 * 3 2 1 5 5 C 1.38391 * 120.00109 * 359.97438 * 4 3 2 6 6 N 1.32121 * 119.99461 * 359.74550 * 5 4 3 7 7 C 1.32156 * 120.00128 * 0.51272 * 6 5 4 8 8 C 1.50702 * 119.99918 * 179.76464 * 7 6 5 9 9 H 1.08999 * 109.46984 * 164.72631 * 8 7 6 10 10 C 1.53007 * 109.46988 * 284.72203 * 8 7 6 11 11 N 1.46501 * 109.47222 * 44.72077 * 8 7 6 12 12 C 1.34766 * 119.99917 * 154.72307 * 11 8 7 13 13 O 1.21592 * 120.00493 * 0.02562 * 12 11 8 14 14 N 1.34776 * 119.99957 * 180.02562 * 12 11 8 15 15 C 1.46505 * 119.99841 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47023 * 180.02562 * 15 14 12 17 17 C 1.38634 * 119.74760 * 269.73191 * 16 15 14 18 18 C 1.37625 * 120.24563 * 179.72079 * 17 16 15 19 19 C 1.40711 * 119.74152 * 0.56820 * 18 17 16 20 20 C 1.41402 * 120.24309 * 179.68257 * 19 18 17 21 21 H 1.07995 * 120.00220 * 204.40779 * 20 19 18 22 22 C 1.39942 * 119.99740 * 24.40571 * 20 19 18 23 23 N 1.30830 * 120.00212 * 17.84949 * 22 20 19 24 24 Si 1.86806 * 120.00047 * 197.84971 * 22 20 19 25 25 H 1.48500 * 109.47203 * 59.99876 * 24 22 20 26 26 H 1.48494 * 109.47134 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46656 * 299.99905 * 24 22 20 28 28 C 1.40716 * 119.51734 * 359.70533 * 19 18 17 29 29 C 1.37622 * 119.73951 * 359.97438 * 28 19 18 30 30 H 1.09002 * 109.47177 * 269.97779 * 1 2 3 31 31 H 1.08999 * 109.47433 * 29.97633 * 1 2 3 32 32 H 1.09000 * 109.47339 * 149.98004 * 1 2 3 33 33 H 1.08004 * 119.99864 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.00139 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46909 * 60.00382 * 10 8 7 36 36 H 1.08993 * 109.46885 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.46815 * 299.99774 * 10 8 7 38 38 H 0.97005 * 119.99772 * 335.00368 * 11 8 7 39 39 H 0.96997 * 120.00549 * 0.02562 * 14 12 11 40 40 H 1.08994 * 109.47254 * 299.99957 * 15 14 12 41 41 H 1.09000 * 109.47178 * 60.00464 * 15 14 12 42 42 H 1.07993 * 119.87954 * 359.97438 * 17 16 15 43 43 H 1.07998 * 120.12657 * 180.27458 * 18 17 16 44 44 H 0.96999 * 119.99843 * 180.02562 * 23 22 20 45 45 H 1.07994 * 120.12832 * 179.97438 * 28 19 18 46 46 H 1.07998 * 119.87102 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4889 1.1445 -0.0005 5 6 4.1809 -0.0540 -0.0005 6 7 3.5202 -1.1981 0.0051 7 6 2.1986 -1.1981 0.0004 8 6 1.4451 -2.5032 0.0015 9 1 0.4039 -2.3213 0.2680 10 6 1.5125 -3.1321 -1.3918 11 7 2.0474 -3.4141 0.9780 12 6 1.3063 -4.3941 1.5318 13 8 0.1380 -4.5227 1.2205 14 7 1.8603 -5.2318 2.4306 15 6 1.0548 -6.2976 3.0321 16 6 1.9038 -7.0856 3.9962 17 6 2.6069 -8.1929 3.5472 18 6 3.3898 -8.9166 4.4175 19 6 3.4655 -8.5357 5.7700 20 6 4.2614 -9.2756 6.6747 21 1 4.0364 -9.2582 7.7309 22 6 5.3405 -10.0306 6.2016 23 7 5.8336 -9.7935 5.0132 24 14 6.0771 -11.3768 7.2669 25 1 5.0364 -12.3911 7.5727 26 1 7.2006 -12.0226 6.5419 27 1 6.5801 -10.7862 8.5332 28 6 2.7430 -7.4135 6.2157 29 6 1.9717 -6.7008 5.3262 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 4.0289 2.0798 -0.0001 34 1 5.2609 -0.0540 -0.0005 35 1 2.5536 -3.3139 -1.6583 36 1 0.9678 -4.0762 -1.3909 37 1 1.0643 -2.4543 -2.1183 38 1 2.9785 -3.3093 1.2291 39 1 2.7922 -5.1292 2.6792 40 1 0.2119 -5.8587 3.5658 41 1 0.6845 -6.9591 2.2490 42 1 2.5433 -8.4863 2.5098 43 1 3.9402 -9.7762 4.0647 44 1 6.5814 -10.3171 4.6851 45 1 2.7936 -7.1127 7.2517 46 1 1.4160 -5.8394 5.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873050065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:16 Heat of formation + Delta-G solvation = 8.302017 kcal Electronic energy + Delta-G solvation = -27800.509003 eV Core-core repulsion = 23881.675323 eV Total energy + Delta-G solvation = -3918.833680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36628 -40.98099 -39.49436 -37.25985 -36.17551 -35.48304 -35.05314 -33.77729 -32.11486 -31.19586 -30.80956 -29.02923 -28.38176 -26.27647 -25.35293 -23.93248 -22.95237 -22.84834 -21.79109 -21.66782 -19.73032 -19.23391 -18.78655 -17.82235 -17.19927 -17.05652 -16.55569 -16.40820 -16.18325 -16.00814 -15.60603 -15.48615 -15.29956 -14.99473 -14.65104 -14.20832 -14.16884 -13.82753 -13.78548 -13.74957 -13.49492 -13.37474 -13.34511 -13.08238 -12.81150 -12.71915 -12.61073 -12.47715 -12.17386 -12.10297 -12.07869 -11.53670 -11.35452 -11.28006 -11.01720 -10.45344 -10.12338 -10.05380 -9.71667 -9.39393 -9.28499 -8.66856 -6.36769 -0.30126 0.08403 0.83384 1.14125 1.38325 1.46519 1.50757 1.85767 2.16976 2.19751 2.63032 2.71754 2.90121 3.15137 3.34353 3.53220 3.59010 3.76419 4.04676 4.15626 4.20435 4.27757 4.33982 4.35024 4.42282 4.52819 4.65043 4.65848 4.69002 4.73701 4.80067 4.87580 5.04982 5.06828 5.14533 5.16072 5.35864 5.42290 5.43346 5.46497 5.56892 5.68893 5.88347 6.04807 6.08699 6.21559 6.26612 6.36339 6.68015 6.75414 6.91791 7.00436 7.09005 7.58640 8.29389 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.001984 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.559129 B =14108.405724 C =14767.850125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.084 3.916 3 N -0.459 5.459 4 C 0.058 3.942 5 C 0.044 3.956 6 N -0.447 5.447 7 C 0.059 3.941 8 C 0.215 3.785 9 H 0.107 0.893 10 C -0.152 4.152 11 N -0.729 5.729 12 C 0.702 3.298 13 O -0.630 6.630 14 N -0.731 5.731 15 C 0.213 3.787 16 C -0.226 4.226 17 C -0.081 4.081 18 C -0.192 4.192 19 C 0.086 3.914 20 C -0.497 4.497 21 H 0.076 0.924 22 C 0.036 3.964 23 N -0.819 5.819 24 Si 0.981 3.019 25 H -0.261 1.261 26 H -0.267 1.267 27 H -0.259 1.259 28 C -0.244 4.244 29 C -0.067 4.067 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.206 0.794 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.407 0.593 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.289 0.711 45 H 0.098 0.902 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 18.406 -11.617 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 N -0.175 5.175 4 C -0.102 4.102 5 C -0.116 4.116 6 N -0.162 5.162 7 C -0.082 4.082 8 C 0.109 3.891 9 H 0.125 0.875 10 C -0.211 4.211 11 N -0.385 5.385 12 C 0.402 3.598 13 O -0.512 6.512 14 N -0.385 5.385 15 C 0.090 3.910 16 C -0.228 4.228 17 C -0.100 4.100 18 C -0.212 4.212 19 C 0.083 3.917 20 C -0.526 4.526 21 H 0.095 0.905 22 C -0.180 4.180 23 N -0.444 5.444 24 Si 0.801 3.199 25 H -0.186 1.186 26 H -0.192 1.192 27 H -0.183 1.183 28 C -0.264 4.264 29 C -0.086 4.086 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.220 0.780 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.242 0.758 39 H 0.237 0.763 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.116 0.884 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.228 18.208 -12.059 22.077 hybrid contribution 1.565 -0.629 0.722 1.835 sum -1.663 17.580 -11.337 20.984 Atomic orbital electron populations 1.20900 0.86443 1.05031 1.04366 1.22320 0.99472 0.88527 0.95203 1.68411 1.10255 1.28866 1.09958 1.24430 0.90211 1.01453 0.94108 1.24349 1.03457 0.87963 0.95846 1.68121 1.08000 1.31596 1.08449 1.21988 0.91220 0.95778 0.99183 1.19661 0.96520 0.83380 0.89571 0.87518 1.22101 1.02689 1.01425 0.94843 1.45041 1.14864 1.32579 1.46055 1.16072 0.84595 0.79825 0.79259 1.90856 1.16740 1.75877 1.67688 1.45470 1.15348 1.32997 1.44700 1.19603 0.91391 0.86595 0.93379 1.19212 1.08161 1.01187 0.94204 1.20762 0.95969 0.95356 0.97917 1.21268 1.03099 1.02152 0.94677 1.18003 0.90225 0.90312 0.93120 1.19866 1.11395 1.25852 0.95473 0.90545 1.26757 0.96089 0.98508 0.96613 1.69861 1.20151 1.35301 1.19118 0.85271 0.78041 0.77748 0.78806 1.18580 1.19178 1.18340 1.21162 1.07023 0.99143 0.99063 1.20680 0.97047 0.97988 0.92869 0.89411 0.88923 0.88980 0.77772 0.78039 0.92158 0.92329 0.89907 0.75763 0.76299 0.92159 0.92612 0.87770 0.88113 0.90013 0.88414 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.41 71.23 0.67 -0.87 16 2 C 0.08 1.55 6.78 42.53 0.29 1.84 16 3 N -0.46 -8.24 10.42 -183.30 -1.91 -10.15 16 4 C 0.06 0.73 11.23 84.69 0.95 1.68 16 5 C 0.04 0.58 11.23 84.69 0.95 1.54 16 6 N -0.45 -8.54 9.74 -183.29 -1.78 -10.33 16 7 C 0.06 1.16 5.71 42.53 0.24 1.40 16 8 C 0.22 4.65 2.46 44.25 0.11 4.75 16 9 H 0.11 2.37 5.36 -2.39 -0.01 2.36 16 10 C -0.15 -3.04 9.47 71.98 0.68 -2.36 16 11 N -0.73 -18.20 5.06 -461.41 -2.34 -20.54 16 12 C 0.70 22.00 8.53 179.06 1.53 23.53 16 13 O -0.63 -23.45 16.00 -4.00 -0.06 -23.51 16 14 N -0.73 -22.93 5.55 -482.29 -2.68 -25.60 16 15 C 0.21 7.43 5.79 85.63 0.50 7.93 16 16 C -0.23 -9.08 5.27 -19.67 -0.10 -9.19 16 17 C -0.08 -3.60 9.67 22.22 0.21 -3.39 16 18 C -0.19 -9.85 8.70 22.73 0.20 -9.65 16 19 C 0.09 4.53 5.58 -21.29 -0.12 4.41 16 20 C -0.50 -26.24 9.05 23.46 0.21 -26.03 16 21 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 22 C 0.04 1.78 5.14 85.25 0.44 2.22 16 23 N -0.82 -41.78 10.95 21.83 0.24 -41.54 16 24 Si 0.98 37.33 29.60 68.60 2.03 39.36 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 28 C -0.24 -11.60 9.80 22.73 0.22 -11.38 16 29 C -0.07 -2.79 9.67 22.22 0.21 -2.58 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.14 6.40 -2.39 -0.02 1.12 16 33 H 0.21 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.41 9.39 8.07 -92.70 -0.75 8.64 16 39 H 0.40 11.91 8.48 -92.71 -0.79 11.12 16 40 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 41 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 42 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 44 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 45 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 46 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -65.42 389.94 0.19 -65.23 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.50 Total: 43.22 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 7.20 Total: -16.14 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -8.47 Total: -108.16 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -65.42 0.19 -65.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873050065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.529 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds