Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 113.26203 * 2 1 4 4 N 1.30387 * 126.18188 * 291.90317 * 3 2 1 5 5 N 1.28663 * 109.52098 * 179.97438 * 4 3 2 6 6 C 1.31237 * 109.25186 * 0.02562 * 5 4 3 7 7 C 1.47847 * 126.37761 * 179.97438 * 6 5 4 8 8 C 1.39986 * 120.56162 * 359.75188 * 7 6 5 9 9 C 1.38362 * 118.29536 * 179.71148 * 8 7 6 10 10 C 1.38347 * 119.30101 * 0.55695 * 9 8 7 11 11 N 1.31914 * 121.08069 * 359.70223 * 10 9 8 12 12 C 1.31711 * 121.86980 * 0.02562 * 11 10 9 13 13 O 1.34412 * 126.18734 * 111.58727 * 3 2 1 14 14 C 1.53512 * 114.16948 * 227.04541 * 2 1 3 15 15 N 1.47480 * 87.93754 * 220.14358 * 14 2 1 16 16 C 1.46896 * 111.00678 * 138.70313 * 15 14 2 17 17 C 1.52996 * 109.47182 * 174.07336 * 16 15 14 18 18 C 1.50694 * 115.54877 * 301.58869 * 17 16 15 19 19 H 1.08002 * 119.99946 * 144.86105 * 18 17 16 20 20 C 1.37883 * 120.00287 * 324.86352 * 18 17 16 21 21 N 1.31508 * 119.99649 * 350.47567 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 170.47221 * 20 18 17 23 23 H 1.48505 * 109.46931 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47292 * 119.99893 * 22 20 18 25 25 H 1.48497 * 109.47159 * 240.00554 * 22 20 18 26 26 C 1.52997 * 117.49621 * 155.92538 * 17 16 15 27 27 C 1.52997 * 117.50369 * 87.26582 * 17 16 15 28 28 C 1.47481 * 87.83339 * 27.01040 * 15 14 2 29 29 H 1.08996 * 109.47249 * 192.95589 * 1 2 3 30 30 H 1.09004 * 109.46765 * 312.95629 * 1 2 3 31 31 H 1.08993 * 109.46866 * 72.94956 * 1 2 3 32 32 H 1.07997 * 120.85155 * 359.97215 * 8 7 6 33 33 H 1.07996 * 120.35097 * 180.28496 * 9 8 7 34 34 H 1.08002 * 119.46657 * 179.72359 * 10 9 8 35 35 H 1.08004 * 119.71532 * 179.97438 * 12 11 10 36 36 H 1.09002 * 113.47719 * 105.37752 * 14 2 1 37 37 H 1.09006 * 113.47866 * 334.90649 * 14 2 1 38 38 H 1.09000 * 109.47010 * 54.06769 * 16 15 14 39 39 H 1.08997 * 109.46824 * 294.07488 * 16 15 14 40 40 H 0.97008 * 119.99859 * 185.00630 * 21 20 18 41 41 H 1.09003 * 117.50158 * 359.97438 * 26 17 16 42 42 H 1.09005 * 117.50123 * 145.02008 * 26 17 16 43 43 H 1.09000 * 117.49825 * 214.98085 * 27 17 16 44 44 H 1.08998 * 117.49486 * 359.97073 * 27 17 16 45 45 H 1.09001 * 113.47855 * 87.75936 * 28 15 14 46 46 H 1.08999 * 113.47585 * 218.22648 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1251 1.3845 0.0000 4 7 2.0685 2.2467 -0.9764 5 7 2.6812 3.3250 -0.6340 6 6 3.1541 3.1862 0.5823 7 6 3.9212 4.1940 1.3451 8 6 4.2163 5.4407 0.7810 9 6 4.9317 6.3507 1.5388 10 6 5.3390 5.9987 2.8133 11 7 5.0511 4.8141 3.3173 12 6 4.3682 3.9163 2.6373 13 8 2.8053 1.9559 1.0087 14 6 2.1585 -0.9544 -1.0251 15 7 3.1647 -1.3025 -0.0045 16 6 3.4390 -2.7456 -0.0063 17 6 4.5884 -3.0474 0.9574 18 6 5.8851 -2.3376 0.6649 19 1 6.5179 -2.0122 1.4775 20 6 6.2638 -2.1033 -0.6400 21 7 5.5963 -2.6580 -1.6280 22 14 7.7250 -0.9980 -1.0046 23 1 8.3008 -0.5020 0.2713 24 1 8.7557 -1.7683 -1.7458 25 1 7.2804 0.1545 -1.8286 26 6 4.6719 -4.4610 1.5365 27 6 4.2336 -3.2942 2.4250 28 6 2.1628 -0.9562 1.0208 29 1 -0.3633 -1.0015 0.2304 30 1 -0.3633 0.7003 0.7522 31 1 -0.3633 0.3013 -0.9824 32 1 3.8901 5.6875 -0.2185 33 1 5.1736 7.3240 1.1381 34 1 5.9015 6.7053 3.4055 35 1 4.1524 2.9569 3.0838 36 1 2.5782 -0.4448 -1.8925 37 1 1.5103 -1.7873 -1.2974 38 1 3.7156 -3.0616 -1.0121 39 1 2.5471 -3.2853 0.3117 40 1 5.9053 -2.5528 -2.5415 41 1 3.9078 -5.1760 1.2313 42 1 5.6648 -4.8775 1.7065 43 1 4.9382 -2.9434 3.1790 44 1 3.1813 -3.2411 2.7041 45 1 1.5156 -1.7895 1.2945 46 1 2.5860 -0.4481 1.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879012788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = 152.095573 kcal Electronic energy + Delta-G solvation = -29749.524473 eV Core-core repulsion = 25836.926149 eV Total energy + Delta-G solvation = -3912.598323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.04089 -40.33281 -39.98001 -36.40239 -36.03574 -33.72584 -32.40281 -32.07441 -31.78677 -29.39238 -27.11097 -25.76688 -25.43103 -24.95958 -24.41582 -23.22778 -22.09831 -21.90649 -21.11148 -19.51251 -18.92642 -17.88177 -17.20171 -16.95924 -16.42392 -16.21601 -16.04417 -15.35588 -14.69609 -14.62839 -14.37397 -14.18710 -14.15149 -13.57551 -13.47888 -13.40148 -12.63285 -12.53583 -12.49383 -12.40259 -12.26121 -12.09983 -11.73965 -11.49738 -11.18571 -11.16203 -10.93889 -10.89915 -10.59561 -10.45004 -10.43216 -10.19810 -9.95232 -9.89347 -9.82455 -9.27573 -9.04327 -8.76084 -8.69590 -8.05329 -7.92366 -5.94275 -3.96240 0.21937 0.91880 1.61918 2.17519 2.53650 3.31296 3.41124 3.44104 3.52825 3.61767 4.02809 4.21333 4.38143 4.44549 4.51337 4.53534 4.61943 4.83076 4.91296 4.98536 5.08422 5.30091 5.38713 5.43879 5.49056 5.54530 5.60847 5.65103 5.70260 5.71829 5.78149 5.82392 5.95967 6.00475 6.06091 6.09970 6.23444 6.26604 6.28416 6.46256 6.62425 6.68112 6.84936 6.94548 7.28305 7.32548 7.59498 7.64872 7.95815 8.07343 8.37718 8.51008 8.97621 9.63984 11.07121 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.004166 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.357054 B = 6719.244449 C = 7917.515567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.018 4.018 3 C 0.235 3.765 4 N -0.287 5.287 5 N -0.270 5.270 6 C 0.193 3.807 7 C -0.065 4.065 8 C -0.028 4.028 9 C -0.174 4.174 10 C 0.115 3.885 11 N -0.480 5.480 12 C 0.141 3.859 13 O -0.205 6.205 14 C 0.025 3.975 15 N -0.423 5.423 16 C 0.060 3.940 17 C 0.070 3.930 18 C -0.470 4.470 19 H 0.055 0.945 20 C 0.085 3.915 21 N -0.881 5.881 22 Si 0.886 3.114 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.284 1.284 26 C -0.207 4.207 27 C -0.214 4.214 28 C 0.010 3.990 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.002 0.998 40 H 0.258 0.742 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 12.650 4.924 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 C 0.026 3.974 4 N -0.134 5.134 5 N -0.119 5.119 6 C -0.015 4.015 7 C -0.069 4.069 8 C -0.055 4.055 9 C -0.193 4.193 10 C -0.042 4.042 11 N -0.188 5.188 12 C -0.018 4.018 13 O -0.083 6.083 14 C -0.105 4.105 15 N -0.144 5.144 16 C -0.067 4.067 17 C 0.069 3.931 18 C -0.507 4.507 19 H 0.073 0.927 20 C -0.117 4.117 21 N -0.520 5.520 22 Si 0.715 3.285 23 H -0.199 1.199 24 H -0.213 1.213 25 H -0.210 1.210 26 C -0.246 4.246 27 C -0.252 4.252 28 C -0.120 4.120 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.185 0.815 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.020 0.980 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.096 13.286 4.384 16.164 hybrid contribution 0.155 -0.349 0.058 0.386 sum -7.941 12.937 4.442 15.816 Atomic orbital electron populations 1.21686 0.90679 1.03019 1.03101 1.20399 0.94978 0.83589 1.03046 1.26961 0.92001 0.97086 0.81365 1.74353 1.18100 0.97228 1.23670 1.74633 1.10488 1.17709 1.09027 1.24953 1.00446 0.83888 0.92240 1.18248 1.01475 0.92081 0.95122 1.21654 0.93053 0.90461 1.00320 1.22124 1.00191 1.01145 0.95881 1.23054 0.94876 0.93155 0.93162 1.67809 1.12208 1.02387 1.36410 1.23079 0.90765 0.98638 0.89369 1.84826 1.55679 1.25652 1.42141 1.23862 0.93999 0.95820 0.96824 1.69068 1.24837 1.20391 1.00151 1.22458 0.93778 0.85400 1.05106 1.18812 0.94907 0.92134 0.87240 1.20371 1.02866 1.35687 0.91757 0.92720 1.24738 0.96156 0.94738 0.96089 1.69675 1.38846 1.43985 0.99447 0.86632 0.82433 0.81117 0.78328 1.19911 1.21252 1.21031 1.22975 1.00072 0.93324 1.08180 1.22886 0.98388 1.06546 0.97374 1.24073 0.94305 0.96528 0.97045 0.90489 0.92173 0.90983 0.83168 0.83635 0.81991 0.81521 0.89436 0.90359 0.85480 0.98031 0.93189 0.91990 0.90469 0.90911 0.91955 0.90675 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.28 37.16 0.34 -1.09 16 2 C -0.02 -0.27 1.49 -155.13 -0.23 -0.50 16 3 C 0.24 4.10 6.98 -12.89 -0.09 4.01 16 4 N -0.29 -5.28 12.22 32.58 0.40 -4.88 16 5 N -0.27 -4.80 11.99 32.07 0.38 -4.42 16 6 C 0.19 3.18 8.01 -13.88 -0.11 3.07 16 7 C -0.07 -0.88 5.89 -104.83 -0.62 -1.50 16 8 C -0.03 -0.30 9.83 -38.88 -0.38 -0.69 16 9 C -0.17 -1.46 10.10 -39.50 -0.40 -1.86 16 10 C 0.11 1.06 11.17 -17.48 -0.20 0.86 16 11 N -0.48 -5.92 10.35 -12.91 -0.13 -6.06 16 12 C 0.14 1.84 10.90 -17.13 -0.19 1.65 16 13 O -0.20 -3.56 10.20 4.03 0.04 -3.52 16 14 C 0.02 0.43 6.86 -7.55 -0.05 0.38 16 15 N -0.42 -8.71 6.00 -244.60 -1.47 -10.18 16 16 C 0.06 1.33 3.90 -3.83 -0.01 1.32 16 17 C 0.07 1.68 2.04 -155.67 -0.32 1.36 16 18 C -0.47 -12.76 8.82 -34.44 -0.30 -13.06 16 19 H 0.05 1.53 7.83 -52.49 -0.41 1.12 16 20 C 0.08 2.31 5.27 -17.82 -0.09 2.22 16 21 N -0.88 -24.01 10.63 55.43 0.59 -23.42 16 22 Si 0.89 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 26 C -0.21 -4.61 9.95 -26.70 -0.27 -4.87 16 27 C -0.21 -4.57 9.94 -26.70 -0.27 -4.84 16 28 C 0.01 0.17 6.81 -7.55 -0.05 0.12 16 29 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.15 1.50 7.94 -52.49 -0.42 1.08 16 33 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.17 2.08 7.95 -52.48 -0.42 1.66 16 36 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 37 H 0.08 1.18 7.87 -51.93 -0.41 0.78 16 38 H 0.13 3.16 5.72 -51.93 -0.30 2.86 16 39 H 0.00 0.03 7.35 -51.93 -0.38 -0.35 16 40 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.11 7.27 -51.93 -0.38 0.73 16 46 H 0.08 1.47 7.72 -51.93 -0.40 1.07 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -31.34 388.44 -9.05 -40.38 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.46 Total: 2.75 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.23 Total: -13.42 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.23 Total: -48.95 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.34 -9.05 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879012788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.480 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds