Wall clock time and date at job start Sat Apr 11 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 113.26203 * 2 1 4 4 N 1.30387 * 126.18188 * 291.90317 * 3 2 1 5 5 N 1.28663 * 109.52098 * 179.97438 * 4 3 2 6 6 C 1.31237 * 109.25186 * 0.02562 * 5 4 3 7 7 C 1.47847 * 126.37761 * 179.97438 * 6 5 4 8 8 C 1.39986 * 120.56162 * 359.75188 * 7 6 5 9 9 C 1.38362 * 118.29536 * 179.71148 * 8 7 6 10 10 C 1.38347 * 119.30101 * 0.55695 * 9 8 7 11 11 N 1.31914 * 121.08069 * 359.70223 * 10 9 8 12 12 C 1.31711 * 121.86980 * 0.02562 * 11 10 9 13 13 O 1.34412 * 126.18734 * 111.58727 * 3 2 1 14 14 C 1.53512 * 114.16948 * 227.04541 * 2 1 3 15 15 N 1.47480 * 87.93754 * 220.14358 * 14 2 1 16 16 C 1.46896 * 111.00678 * 138.70313 * 15 14 2 17 17 C 1.52996 * 109.47182 * 174.07336 * 16 15 14 18 18 C 1.50694 * 115.54877 * 301.58869 * 17 16 15 19 19 H 1.08002 * 119.99946 * 144.86105 * 18 17 16 20 20 C 1.37883 * 120.00287 * 324.86352 * 18 17 16 21 21 N 1.31508 * 119.99649 * 350.47567 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 170.47221 * 20 18 17 23 23 H 1.48505 * 109.46931 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47292 * 119.99893 * 22 20 18 25 25 H 1.48497 * 109.47159 * 240.00554 * 22 20 18 26 26 C 1.52997 * 117.49621 * 155.92538 * 17 16 15 27 27 C 1.52997 * 117.50369 * 87.26582 * 17 16 15 28 28 C 1.47481 * 87.83339 * 27.01040 * 15 14 2 29 29 H 1.08996 * 109.47249 * 192.95589 * 1 2 3 30 30 H 1.09004 * 109.46765 * 312.95629 * 1 2 3 31 31 H 1.08993 * 109.46866 * 72.94956 * 1 2 3 32 32 H 1.07997 * 120.85155 * 359.97215 * 8 7 6 33 33 H 1.07996 * 120.35097 * 180.28496 * 9 8 7 34 34 H 1.08002 * 119.46657 * 179.72359 * 10 9 8 35 35 H 1.08004 * 119.71532 * 179.97438 * 12 11 10 36 36 H 1.09002 * 113.47719 * 105.37752 * 14 2 1 37 37 H 1.09006 * 113.47866 * 334.90649 * 14 2 1 38 38 H 1.09000 * 109.47010 * 54.06769 * 16 15 14 39 39 H 1.08997 * 109.46824 * 294.07488 * 16 15 14 40 40 H 0.97008 * 119.99859 * 185.00630 * 21 20 18 41 41 H 1.09003 * 117.50158 * 359.97438 * 26 17 16 42 42 H 1.09005 * 117.50123 * 145.02008 * 26 17 16 43 43 H 1.09000 * 117.49825 * 214.98085 * 27 17 16 44 44 H 1.08998 * 117.49486 * 359.97073 * 27 17 16 45 45 H 1.09001 * 113.47855 * 87.75936 * 28 15 14 46 46 H 1.08999 * 113.47585 * 218.22648 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1251 1.3845 0.0000 4 7 2.0685 2.2467 -0.9764 5 7 2.6812 3.3250 -0.6340 6 6 3.1541 3.1862 0.5823 7 6 3.9212 4.1940 1.3451 8 6 4.2163 5.4407 0.7810 9 6 4.9317 6.3507 1.5388 10 6 5.3390 5.9987 2.8133 11 7 5.0511 4.8141 3.3173 12 6 4.3682 3.9163 2.6373 13 8 2.8053 1.9559 1.0087 14 6 2.1585 -0.9544 -1.0251 15 7 3.1647 -1.3025 -0.0045 16 6 3.4390 -2.7456 -0.0063 17 6 4.5884 -3.0474 0.9574 18 6 5.8851 -2.3376 0.6649 19 1 6.5179 -2.0122 1.4775 20 6 6.2638 -2.1033 -0.6400 21 7 5.5963 -2.6580 -1.6280 22 14 7.7250 -0.9980 -1.0046 23 1 8.3008 -0.5020 0.2713 24 1 8.7557 -1.7683 -1.7458 25 1 7.2804 0.1545 -1.8286 26 6 4.6719 -4.4610 1.5365 27 6 4.2336 -3.2942 2.4250 28 6 2.1628 -0.9562 1.0208 29 1 -0.3633 -1.0015 0.2304 30 1 -0.3633 0.7003 0.7522 31 1 -0.3633 0.3013 -0.9824 32 1 3.8901 5.6875 -0.2185 33 1 5.1736 7.3240 1.1381 34 1 5.9015 6.7053 3.4055 35 1 4.1524 2.9569 3.0838 36 1 2.5782 -0.4448 -1.8925 37 1 1.5103 -1.7873 -1.2974 38 1 3.7156 -3.0616 -1.0121 39 1 2.5471 -3.2853 0.3117 40 1 5.9053 -2.5528 -2.5415 41 1 3.9078 -5.1760 1.2313 42 1 5.6648 -4.8775 1.7065 43 1 4.9382 -2.9434 3.1790 44 1 3.1813 -3.2411 2.7041 45 1 1.5156 -1.7895 1.2945 46 1 2.5860 -0.4481 1.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879012788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:25 Heat of formation + Delta-G solvation = 128.479554 kcal Electronic energy + Delta-G solvation = -29750.548540 eV Core-core repulsion = 25836.926149 eV Total energy + Delta-G solvation = -3913.622391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.33663 -41.43363 -41.11821 -38.14617 -37.35593 -34.78935 -34.11085 -33.44020 -32.82256 -30.55005 -28.50111 -27.41097 -27.07331 -26.08275 -25.53779 -24.28673 -23.34515 -23.18848 -22.83494 -20.92214 -20.64616 -18.90824 -18.53550 -18.09936 -17.91086 -17.31679 -17.22144 -16.77445 -16.51052 -16.12291 -15.80359 -15.21438 -15.09723 -15.04464 -14.98616 -14.26600 -14.15419 -13.79002 -13.70221 -13.57426 -13.36911 -13.19510 -13.13634 -13.06981 -12.95922 -12.92303 -12.49544 -12.37526 -12.30656 -12.12086 -11.79518 -11.71648 -11.41577 -11.08633 -11.00091 -10.77077 -10.69408 -10.52373 -9.93119 -9.84549 -9.42219 -7.99546 -6.05889 -0.79007 0.08349 0.45458 0.98165 1.27079 1.29178 1.35771 1.41805 2.39657 2.45118 2.66501 2.81705 3.05440 3.24570 3.28365 3.38370 3.64079 3.64586 3.77242 3.86161 3.88123 4.10901 4.16000 4.22416 4.25946 4.37514 4.45800 4.47010 4.47706 4.61408 4.64341 4.65425 4.75664 4.76224 4.87922 4.88020 4.95084 4.97655 5.00161 5.03038 5.14416 5.20632 5.25133 5.48984 5.54426 5.58662 5.78491 6.12566 6.40501 6.55048 6.74643 6.93023 7.06520 7.54450 8.98023 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.004166 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.357054 B = 6719.244449 C = 7917.515567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.003 4.003 3 C 0.224 3.776 4 N -0.308 5.308 5 N -0.295 5.295 6 C 0.200 3.800 7 C -0.094 4.094 8 C -0.032 4.032 9 C -0.155 4.155 10 C 0.119 3.881 11 N -0.503 5.503 12 C 0.131 3.869 13 O -0.217 6.217 14 C 0.027 3.973 15 N -0.466 5.466 16 C 0.074 3.926 17 C 0.037 3.963 18 C -0.485 4.485 19 H 0.034 0.966 20 C 0.053 3.947 21 N -0.890 5.890 22 Si 0.925 3.075 23 H -0.277 1.277 24 H -0.277 1.277 25 H -0.295 1.295 26 C -0.204 4.204 27 C -0.192 4.192 28 C 0.017 3.983 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.189 0.811 34 H 0.202 0.798 35 H 0.160 0.840 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.025 0.975 40 H 0.255 0.745 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.748 13.882 5.982 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.005 4.005 3 C 0.013 3.987 4 N -0.154 5.154 5 N -0.142 5.142 6 C -0.009 4.009 7 C -0.098 4.098 8 C -0.059 4.059 9 C -0.174 4.174 10 C -0.037 4.037 11 N -0.211 5.211 12 C -0.028 4.028 13 O -0.096 6.096 14 C -0.103 4.103 15 N -0.187 5.187 16 C -0.054 4.054 17 C 0.037 3.963 18 C -0.522 4.522 19 H 0.052 0.948 20 C -0.148 4.148 21 N -0.529 5.529 22 Si 0.753 3.247 23 H -0.202 1.202 24 H -0.202 1.202 25 H -0.222 1.222 26 C -0.243 4.243 27 C -0.229 4.229 28 C -0.113 4.113 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.207 0.793 34 H 0.219 0.781 35 H 0.177 0.823 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.092 14.517 5.434 17.970 hybrid contribution 0.576 -0.596 -0.194 0.851 sum -8.516 13.920 5.240 17.139 Atomic orbital electron populations 1.21731 0.87221 1.04982 1.03833 1.20449 0.97220 0.81841 1.01031 1.27480 0.92077 0.97891 0.81217 1.74265 1.18962 0.97791 1.24366 1.74555 1.11835 1.17908 1.09859 1.25597 0.99408 0.83845 0.92016 1.18420 1.03039 0.92755 0.95564 1.21918 0.93174 0.89878 1.00926 1.22573 0.97840 1.02024 0.94971 1.23802 0.93673 0.92437 0.93826 1.67847 1.12737 1.03600 1.36958 1.22995 0.91436 0.98950 0.89406 1.84831 1.56001 1.26248 1.42503 1.23857 0.93751 0.96946 0.95750 1.68968 1.27598 1.19417 1.02716 1.22145 0.93809 0.86790 1.02681 1.18933 0.94589 0.93140 0.89664 1.20544 1.04254 1.36183 0.91257 0.94764 1.25148 0.97734 0.95647 0.96256 1.69801 1.39317 1.44540 0.99264 0.86034 0.81122 0.79785 0.77754 1.20187 1.20244 1.22202 1.22952 1.00165 0.93155 1.08018 1.22860 0.99796 1.04730 0.95544 1.24084 0.93692 0.97440 0.96038 0.87821 0.91265 0.90493 0.82580 0.79345 0.78114 0.82312 0.92304 0.87756 0.88620 0.95659 0.93484 0.90032 0.91755 0.91648 0.89109 0.87838 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.28 71.98 0.67 -1.73 16 2 C 0.00 -0.09 1.49 -52.58 -0.08 -0.17 16 3 C 0.22 7.91 6.98 88.32 0.62 8.53 16 4 N -0.31 -11.64 12.22 -165.33 -2.02 -13.66 16 5 N -0.29 -10.78 11.99 -166.30 -1.99 -12.78 16 6 C 0.20 6.81 8.01 87.33 0.70 7.51 16 7 C -0.09 -2.56 5.89 -20.00 -0.12 -2.68 16 8 C -0.03 -0.66 9.83 22.72 0.22 -0.44 16 9 C -0.16 -2.10 10.10 22.33 0.23 -1.88 16 10 C 0.12 1.85 11.17 84.71 0.95 2.80 16 11 N -0.50 -11.87 10.35 -194.76 -2.02 -13.89 16 12 C 0.13 3.47 10.90 85.02 0.93 4.40 16 13 O -0.22 -7.81 10.20 -8.51 -0.09 -7.90 16 14 C 0.03 0.91 6.86 83.57 0.57 1.48 16 15 N -0.47 -19.05 6.00 -927.78 -5.56 -24.62 16 16 C 0.07 3.20 3.90 86.30 0.34 3.54 16 17 C 0.04 1.78 2.04 -52.93 -0.11 1.68 16 18 C -0.48 -26.86 8.82 25.60 0.23 -26.63 16 19 H 0.03 1.97 7.83 -2.91 -0.02 1.95 16 20 C 0.05 2.93 5.27 84.66 0.45 3.37 16 21 N -0.89 -49.46 10.63 21.45 0.23 -49.24 16 22 Si 0.92 45.96 29.55 68.60 2.03 47.99 16 23 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 26 C -0.20 -8.86 9.95 30.62 0.30 -8.56 16 27 C -0.19 -7.87 9.94 30.62 0.30 -7.57 16 28 C 0.02 0.53 6.81 83.57 0.57 1.10 16 29 H 0.10 1.55 7.91 -2.39 -0.02 1.53 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.16 2.97 7.94 -2.91 -0.02 2.95 16 33 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.16 4.23 7.95 -2.91 -0.02 4.21 16 36 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 37 H 0.10 2.97 7.87 -2.38 -0.02 2.96 16 38 H 0.10 4.78 5.72 -2.39 -0.01 4.76 16 39 H 0.03 0.95 7.35 -2.39 -0.02 0.93 16 40 H 0.26 13.82 8.32 -92.70 -0.77 13.05 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.06 2.91 8.14 -2.38 -0.02 2.89 16 43 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.10 2.68 7.27 -2.39 -0.02 2.66 16 46 H 0.07 2.48 7.72 -2.39 -0.02 2.46 16 Total: -1.00 -70.78 388.44 -1.67 -72.45 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.99 Total: 16.89 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 6.76 Total: -15.25 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -11.37 Total: -114.18 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.09 Total: -7.90 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.78 -1.67 -72.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879012788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.932 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds