Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38043 * 126.28883 * 2 1 4 4 C 1.47435 * 126.41559 * 359.97438 * 3 2 1 5 5 O 1.21606 * 119.99782 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00217 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00014 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.25270 * 35.52303 * 7 6 4 9 9 C 1.52728 * 109.25326 * 154.99569 * 7 6 4 10 10 C 1.53320 * 108.61584 * 171.46895 * 9 7 6 11 11 C 1.52694 * 108.39780 * 290.46405 * 10 9 7 12 12 C 1.50492 * 110.70420 * 50.54047 * 11 10 9 13 13 C 1.39175 * 117.97571 * 162.86365 * 12 11 10 14 14 C 1.38411 * 118.86913 * 179.43640 * 13 12 11 15 15 C 1.38239 * 118.84184 * 0.02562 * 14 13 12 16 16 N 1.31515 * 120.60873 * 0.12053 * 15 14 13 17 17 C 1.32703 * 122.40254 * 359.97074 * 16 15 14 18 18 C 1.41291 * 107.17448 * 180.25863 * 3 2 1 19 19 N 1.30452 * 108.01467 * 359.59164 * 18 3 2 20 20 N 1.34256 * 126.29687 * 180.02562 * 2 1 3 21 21 C 1.46498 * 125.74901 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.47360 * 90.00204 * 21 20 2 23 23 H 1.07999 * 119.99517 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00104 * 179.97438 * 22 21 20 25 25 N 1.31507 * 119.99972 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99783 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47033 * 60.00638 * 26 24 22 28 28 H 1.48503 * 109.47295 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47548 * 300.00309 * 26 24 22 30 30 H 1.09004 * 109.47003 * 89.98088 * 1 2 3 31 31 H 1.09000 * 109.46656 * 209.97395 * 1 2 3 32 32 H 1.08993 * 109.47501 * 329.97931 * 1 2 3 33 33 H 0.97002 * 119.99943 * 359.97438 * 6 4 3 34 34 H 1.09002 * 109.64322 * 291.26264 * 9 7 6 35 35 H 1.09002 * 109.64179 * 51.68024 * 9 7 6 36 36 H 1.09005 * 109.68853 * 49.98416 * 10 9 7 37 37 H 1.09006 * 109.68791 * 170.55108 * 10 9 7 38 38 H 1.09002 * 109.06060 * 290.29569 * 11 10 9 39 39 H 1.08998 * 109.30290 * 170.93783 * 11 10 9 40 40 H 1.08007 * 120.56698 * 359.43700 * 13 12 11 41 41 H 1.07998 * 120.57729 * 180.02562 * 14 13 12 42 42 H 1.07998 * 119.69460 * 180.14348 * 15 14 13 43 43 H 1.07999 * 125.99136 * 179.73433 * 18 3 2 44 44 H 1.09008 * 109.47362 * 210.00220 * 21 20 2 45 45 H 1.09004 * 109.47323 * 329.99598 * 21 20 2 46 46 H 0.97008 * 120.00123 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 -0.0005 5 8 0.6994 2.7878 -0.0015 6 7 2.7997 3.5108 -0.0010 7 6 2.3642 4.9095 -0.0021 8 1 1.4575 5.0041 0.5955 9 6 3.4619 5.7793 0.6071 10 6 3.0874 7.2524 0.4056 11 6 3.1999 7.5792 -1.0817 12 6 2.4516 6.5673 -1.9069 13 6 2.1412 6.8987 -3.2225 14 6 1.4637 5.9771 -4.0017 15 6 1.1183 4.7594 -3.4458 16 7 1.4258 4.4819 -2.1976 17 6 2.0727 5.3384 -1.4172 18 6 3.6591 0.6500 -0.0061 19 7 3.6341 -0.6542 -0.0006 20 7 2.3018 -1.0821 -0.0005 21 6 1.8502 -2.4757 -0.0006 22 6 1.6949 -2.9534 -1.4214 23 1 1.9106 -2.2854 -2.2422 24 6 1.2774 -4.2431 -1.6734 25 7 1.0144 -5.0562 -0.6739 26 14 1.0843 -4.8349 -3.4346 27 1 2.3896 -4.7369 -4.1357 28 1 0.6278 -6.2480 -3.4348 29 1 0.0824 -3.9905 -4.1336 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5141 33 1 3.7460 3.2975 -0.0006 34 1 3.5496 5.5659 1.6724 35 1 4.4107 5.5716 0.1124 36 1 2.0630 7.4197 0.7385 37 1 3.7674 7.8854 0.9758 38 1 4.2512 7.5711 -1.3694 39 1 2.7851 8.5703 -1.2652 40 1 2.4242 7.8587 -3.6285 41 1 1.2092 6.2052 -5.0262 42 1 0.5915 4.0292 -4.0421 43 1 4.5449 1.2679 -0.0117 44 1 2.5851 -3.0958 0.5129 45 1 0.8918 -2.5471 0.5137 46 1 0.7203 -5.9635 -0.8512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885393716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 57.281919 kcal Electronic energy + Delta-G solvation = -29073.178030 eV Core-core repulsion = 25156.468278 eV Total energy + Delta-G solvation = -3916.709752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96469 -40.54260 -38.51331 -36.78919 -34.41629 -33.82024 -32.37521 -31.86697 -30.99418 -30.66099 -29.12897 -27.13041 -26.48271 -24.42014 -23.54091 -23.40723 -22.61620 -21.54335 -20.24627 -19.65764 -18.83270 -17.17951 -16.83050 -16.65272 -16.51725 -16.12070 -15.33347 -15.05484 -14.66650 -14.47550 -14.42085 -14.16430 -13.77063 -13.72533 -13.64914 -13.15089 -13.00840 -12.85089 -12.66026 -12.43553 -12.34183 -12.07250 -11.99726 -11.70622 -11.58602 -11.38099 -11.16198 -11.08220 -10.92977 -10.82880 -10.32238 -10.06564 -9.89344 -9.77491 -9.43538 -9.17421 -8.88123 -8.77010 -8.66384 -8.48855 -7.78464 -6.29061 -4.36504 0.99363 1.20355 2.36645 2.91433 3.23161 3.25193 3.26667 3.32743 3.59956 3.81878 4.02197 4.17847 4.28292 4.42515 4.50489 4.57999 4.73163 4.80398 4.90432 5.00798 5.05281 5.18531 5.21089 5.25956 5.37906 5.44316 5.45217 5.52403 5.60071 5.64803 5.76571 5.79799 5.86450 5.95404 6.03840 6.07448 6.10397 6.23578 6.52605 6.60899 6.67003 6.77527 6.89137 6.97058 7.25872 7.61866 7.82943 7.87199 7.93861 8.08142 8.48461 8.68964 8.88017 9.29994 10.79122 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.002721 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.485116 B =10287.139029 C =11232.783047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.163 3.837 3 C -0.326 4.326 4 C 0.613 3.387 5 O -0.539 6.539 6 N -0.726 5.726 7 C 0.205 3.795 8 H 0.102 0.898 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.076 4.076 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.176 4.176 15 C 0.101 3.899 16 N -0.448 5.448 17 C 0.119 3.881 18 C 0.055 3.945 19 N -0.298 5.298 20 N -0.316 5.316 21 C 0.252 3.748 22 C -0.539 4.539 23 H 0.064 0.936 24 C 0.067 3.933 25 N -0.891 5.891 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.395 0.605 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.153 0.847 43 H 0.173 0.827 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 26.199 -0.005 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.026 3.974 3 C -0.342 4.342 4 C 0.403 3.597 5 O -0.416 6.416 6 N -0.377 5.377 7 C 0.099 3.901 8 H 0.120 0.880 9 C -0.164 4.164 10 C -0.155 4.155 11 C -0.114 4.114 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.196 4.196 15 C -0.059 4.059 16 N -0.156 5.156 17 C -0.018 4.018 18 C -0.132 4.132 19 N -0.118 5.118 20 N -0.093 5.093 21 C 0.135 3.865 22 C -0.577 4.577 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.190 0.810 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.584 24.086 0.420 24.355 hybrid contribution 0.213 0.947 -1.702 1.960 sum 3.797 25.033 -1.282 25.352 Atomic orbital electron populations 1.20539 0.86905 1.03568 1.03829 1.21447 0.94896 0.86525 0.94504 1.19710 0.92935 0.92712 1.28794 1.17121 0.85055 0.83494 0.74036 1.90670 1.16534 1.84109 1.50262 1.45591 1.09558 1.04311 1.78258 1.19484 0.98789 0.81582 0.90295 0.88041 1.21836 0.98151 0.94610 1.01824 1.21514 1.02654 0.95700 0.95621 1.20407 0.99825 0.96907 0.94241 1.20458 1.00926 0.96353 0.95357 1.21506 0.96806 0.99500 0.93269 1.22142 1.00647 0.95591 1.01175 1.22781 0.96382 0.95217 0.91475 1.67663 1.09211 1.33686 1.05026 1.21543 0.94089 0.89518 0.96688 1.23684 0.96391 0.92602 1.00530 1.77108 0.98676 1.12303 1.23744 1.49315 1.02477 1.08233 1.49283 1.19812 0.96329 0.71050 0.99314 1.21226 1.47341 0.98073 0.91085 0.91745 1.24914 0.94494 0.95996 0.98243 1.69905 1.44583 1.07181 1.31150 0.86389 0.78867 0.77707 0.83604 1.19936 1.20892 1.19843 0.89974 0.91119 0.88846 0.77080 0.89975 0.90842 0.91126 0.90531 0.90420 0.90589 0.85216 0.85054 0.82960 0.81029 0.92622 0.92634 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.57 36.01 0.34 -1.38 16 2 C 0.16 3.47 7.01 -81.60 -0.57 2.90 16 3 C -0.33 -6.26 6.13 -105.06 -0.64 -6.90 16 4 C 0.61 10.73 7.10 -12.52 -0.09 10.64 16 5 O -0.54 -10.74 13.82 5.27 0.07 -10.67 16 6 N -0.73 -9.59 4.94 -56.14 -0.28 -9.87 16 7 C 0.20 2.36 2.63 -69.21 -0.18 2.18 16 8 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 9 C -0.13 -0.92 5.41 -26.71 -0.14 -1.07 16 10 C -0.12 -0.70 5.99 -26.72 -0.16 -0.86 16 11 C -0.08 -0.49 5.68 -28.14 -0.16 -0.65 16 12 C -0.13 -1.27 5.74 -104.61 -0.60 -1.87 16 13 C -0.08 -0.77 9.75 -39.17 -0.38 -1.15 16 14 C -0.18 -1.73 10.12 -39.52 -0.40 -2.13 16 15 C 0.10 1.29 11.19 -17.69 -0.20 1.09 16 16 N -0.45 -6.85 8.54 -9.51 -0.08 -6.93 16 17 C 0.12 1.51 6.36 -82.44 -0.52 0.99 16 18 C 0.05 1.00 11.50 -16.98 -0.20 0.80 16 19 N -0.30 -6.64 12.50 30.86 0.39 -6.25 16 20 N -0.32 -7.39 3.56 -57.77 -0.21 -7.60 16 21 C 0.25 6.45 5.97 -5.19 -0.03 6.42 16 22 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 23 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 25 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 26 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 32 H 0.09 1.71 6.50 -51.93 -0.34 1.37 16 33 H 0.40 4.30 7.55 -40.82 -0.31 3.99 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.17 2.29 7.50 -52.49 -0.39 1.90 16 44 H 0.06 1.51 8.14 -51.92 -0.42 1.08 16 45 H 0.06 1.41 7.02 -51.93 -0.36 1.05 16 46 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -33.78 381.04 -9.36 -43.14 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.35 Total: 5.00 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.36 Total: -4.46 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.56 Total: -54.95 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.78 -9.36 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885393716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.427 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds