Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47293 * 324.99715 * 7 6 4 9 9 C 1.50709 * 109.46913 * 205.00316 * 7 6 4 10 10 C 1.38679 * 120.41574 * 139.72252 * 9 7 6 11 11 C 1.38626 * 118.41410 * 179.78221 * 10 9 7 12 12 C 1.38223 * 119.16396 * 0.51022 * 11 10 9 13 13 N 1.31852 * 120.76380 * 359.72686 * 12 11 10 14 14 C 1.31880 * 121.72595 * 0.02562 * 13 12 11 15 15 C 1.52996 * 109.47401 * 85.00379 * 7 6 4 16 16 C 1.53003 * 117.49486 * 8.62084 * 15 7 6 17 17 C 1.52998 * 117.49689 * 299.99827 * 15 7 6 18 18 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 19 19 N 1.30448 * 108.01917 * 0.02562 * 18 3 2 20 20 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 21 21 C 1.46494 * 125.75336 * 0.23997 * 20 2 1 22 22 C 1.50700 * 109.47034 * 90.00525 * 21 20 2 23 23 H 1.08000 * 120.00118 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00281 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00547 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99883 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47427 * 90.00037 * 26 24 22 28 28 H 1.48504 * 109.47174 * 210.00251 * 26 24 22 29 29 H 1.48499 * 109.46966 * 330.00064 * 26 24 22 30 30 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 31 31 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 32 32 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 33 33 H 0.97001 * 120.00147 * 0.02562 * 6 4 3 34 34 H 1.07997 * 120.79099 * 0.02562 * 10 9 7 35 35 H 1.08007 * 120.41694 * 180.21746 * 11 10 9 36 36 H 1.08001 * 119.61839 * 179.74508 * 12 11 10 37 37 H 1.08001 * 119.62049 * 180.02562 * 14 13 12 38 38 H 1.09000 * 115.55042 * 154.32989 * 15 7 6 39 39 H 1.08996 * 117.50274 * 359.97438 * 16 15 7 40 40 H 1.09003 * 117.49899 * 145.02361 * 16 15 7 41 41 H 1.09000 * 117.49941 * 214.97558 * 17 15 7 42 42 H 1.09000 * 117.50181 * 359.97438 * 17 15 7 43 43 H 1.07998 * 125.98994 * 179.97438 * 18 3 2 44 44 H 1.09003 * 109.46965 * 209.99756 * 21 20 2 45 45 H 1.09000 * 109.47680 * 330.00516 * 21 20 2 46 46 H 0.96994 * 120.00485 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 1 1.4550 5.0046 -0.6035 9 6 3.4470 5.7704 -0.6083 10 6 3.1229 6.8122 -1.4643 11 6 4.1514 7.5806 -1.9873 12 6 5.4570 7.2782 -1.6491 13 7 5.7284 6.2766 -0.8357 14 6 4.7755 5.5278 -0.3158 15 6 2.0868 5.3627 1.4246 16 6 2.4891 4.4140 2.5555 17 6 1.0116 4.6076 2.2085 18 6 3.6591 0.6499 0.0063 19 7 3.6340 -0.6543 0.0092 20 7 2.3017 -1.0822 0.0059 21 6 1.8501 -2.4757 0.0085 22 6 1.7002 -2.9579 -1.4114 23 1 1.9190 -2.2926 -2.2335 24 6 1.2836 -4.2483 -1.6610 25 7 1.1523 -4.6689 -2.9001 26 14 0.9059 -5.3993 -0.2390 27 1 -0.5263 -5.2734 0.1327 28 1 1.1905 -6.7988 -0.6459 29 1 1.7532 -5.0407 0.9266 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 3.7461 3.2974 -0.0002 34 1 2.0935 7.0224 -1.7143 35 1 3.9354 8.4021 -2.6543 36 1 6.2643 7.8694 -2.0556 37 1 5.0363 4.7160 0.3471 38 1 2.1839 6.4330 1.6066 39 1 2.9511 3.4667 2.2774 40 1 2.8512 4.8600 3.4819 41 1 0.4016 5.1810 2.9066 42 1 0.5016 3.7881 1.7020 43 1 4.5449 1.2677 0.0075 44 1 2.5830 -3.0942 0.5267 45 1 0.8897 -2.5456 0.5192 46 1 0.8589 -5.5766 -3.0757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889739143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = 102.546946 kcal Electronic energy + Delta-G solvation = -28971.328324 eV Core-core repulsion = 25056.581411 eV Total energy + Delta-G solvation = -3914.746913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12052 -40.63754 -39.33063 -37.02157 -34.41131 -33.90489 -32.86378 -32.22542 -31.61604 -31.20836 -28.26219 -27.18932 -26.42624 -24.03012 -23.19231 -22.83319 -22.29489 -22.22428 -20.43827 -19.74729 -19.07194 -17.74231 -17.24806 -17.07733 -16.74637 -16.30670 -15.89266 -15.19456 -14.92254 -14.82424 -14.56541 -14.27452 -14.03672 -13.96427 -13.52582 -13.36713 -13.22118 -12.95877 -12.71013 -12.58291 -12.32804 -12.20836 -12.05900 -12.03313 -11.64380 -11.49725 -11.22654 -10.86059 -10.56575 -10.42448 -10.27545 -10.21707 -10.09667 -9.81774 -9.68749 -9.53981 -9.28721 -9.00948 -8.86873 -8.69104 -8.01891 -6.34745 -4.39703 0.75002 0.95248 2.06115 2.68294 2.97303 3.09475 3.16573 3.18895 3.36503 3.49800 3.77059 3.80619 4.07139 4.13940 4.33671 4.53289 4.60507 4.74408 4.80889 4.87410 4.92753 5.01282 5.03249 5.11114 5.16958 5.27122 5.36749 5.44324 5.54795 5.62860 5.67377 5.76160 5.80082 5.84897 5.93442 6.00665 6.08078 6.22561 6.32769 6.34757 6.41361 6.43051 6.53452 6.56341 6.97453 7.16130 7.52043 7.59443 7.66364 8.17671 8.23822 8.48823 8.68328 9.18999 10.77491 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.002577 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.741131 B =10863.708144 C =11504.517474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.171 3.829 3 C -0.331 4.331 4 C 0.609 3.391 5 O -0.547 6.547 6 N -0.729 5.729 7 C 0.226 3.774 8 H 0.102 0.898 9 C -0.136 4.136 10 C -0.063 4.063 11 C -0.170 4.170 12 C 0.095 3.905 13 N -0.481 5.481 14 C 0.109 3.891 15 C -0.169 4.169 16 C -0.174 4.174 17 C -0.179 4.179 18 C 0.061 3.939 19 N -0.290 5.290 20 N -0.313 5.313 21 C 0.224 3.776 22 C -0.546 4.546 23 H 0.082 0.918 24 C 0.082 3.918 25 N -0.883 5.883 26 Si 0.872 3.128 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.398 0.602 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.176 0.824 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 23.358 7.342 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.034 3.966 3 C -0.346 4.346 4 C 0.400 3.600 5 O -0.427 6.427 6 N -0.381 5.381 7 C 0.120 3.880 8 H 0.120 0.880 9 C -0.138 4.138 10 C -0.090 4.090 11 C -0.190 4.190 12 C -0.062 4.062 13 N -0.189 5.189 14 C -0.048 4.048 15 C -0.188 4.188 16 C -0.212 4.212 17 C -0.216 4.216 18 C -0.127 4.127 19 N -0.110 5.110 20 N -0.089 5.089 21 C 0.106 3.894 22 C -0.584 4.584 23 H 0.100 0.900 24 C -0.123 4.123 25 N -0.519 5.519 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.203 1.203 29 H -0.188 1.188 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.193 0.807 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.632 21.918 7.423 23.425 hybrid contribution -0.888 0.158 0.237 0.933 sum 2.744 22.077 7.661 23.529 Atomic orbital electron populations 1.20600 0.86684 1.03692 1.04250 1.21469 0.94948 0.86387 0.93810 1.19619 0.93083 0.92423 1.29513 1.17241 0.85012 0.83756 0.73975 1.90636 1.16578 1.84215 1.51256 1.45860 1.09918 1.04752 1.77575 1.19092 0.95213 0.79405 0.94266 0.87975 1.20912 0.96022 0.98058 0.98843 1.21494 1.00347 0.93360 0.93781 1.22153 0.93968 1.01214 1.01653 1.22818 0.95809 0.93832 0.93712 1.67720 1.37133 1.05193 1.08839 1.22541 0.88097 0.97462 0.96682 1.22649 1.06585 0.97703 0.91873 1.22949 0.98919 1.01145 0.98140 1.23371 0.91735 1.03941 1.02524 1.23746 0.96402 0.92581 0.99950 1.77160 0.98049 1.12361 1.23425 1.48911 1.02766 1.07554 1.49687 1.20158 0.95723 0.73304 1.00237 1.21084 1.48120 0.99176 0.90000 0.90036 1.24790 0.94281 0.97391 0.95873 1.69859 1.45135 1.18157 1.18753 0.86910 0.79528 0.81060 0.82718 1.19486 1.20339 1.18765 0.89465 0.91120 0.88614 0.76681 0.84475 0.84595 0.82733 0.82942 0.87658 0.88326 0.89377 0.89536 0.85916 0.80663 0.92703 0.93399 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.56 36.01 0.34 -1.25 16 2 C 0.17 3.28 7.01 -81.60 -0.57 2.71 16 3 C -0.33 -5.63 6.13 -105.07 -0.64 -6.28 16 4 C 0.61 9.03 6.65 -12.52 -0.08 8.95 16 5 O -0.55 -9.09 11.87 5.28 0.06 -9.03 16 6 N -0.73 -8.13 3.56 -56.01 -0.20 -8.33 16 7 C 0.23 2.24 2.66 -69.08 -0.18 2.06 16 8 H 0.10 1.14 7.47 -51.93 -0.39 0.76 16 9 C -0.14 -1.21 4.95 -104.48 -0.52 -1.73 16 10 C -0.06 -0.49 9.82 -39.28 -0.39 -0.88 16 11 C -0.17 -1.18 10.11 -39.44 -0.40 -1.58 16 12 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 13 N -0.48 -4.93 10.36 -13.26 -0.14 -5.06 16 14 C 0.11 1.03 10.23 -17.55 -0.18 0.85 16 15 C -0.17 -1.60 5.69 -90.62 -0.52 -2.12 16 16 C -0.17 -1.74 9.73 -26.73 -0.26 -2.00 16 17 C -0.18 -1.96 9.82 -26.73 -0.26 -2.22 16 18 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 19 N -0.29 -6.00 12.50 30.86 0.39 -5.61 16 20 N -0.31 -6.74 3.56 -57.77 -0.21 -6.94 16 21 C 0.22 5.15 5.04 -5.20 -0.03 5.12 16 22 C -0.55 -14.82 9.94 -34.44 -0.34 -15.16 16 23 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 24 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 25 N -0.88 -25.73 13.96 55.43 0.77 -24.96 16 26 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.07 1.12 7.04 -51.93 -0.37 0.76 16 32 H 0.10 1.50 6.51 -51.93 -0.34 1.16 16 33 H 0.40 3.78 5.85 -40.82 -0.24 3.54 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.15 1.22 6.93 -52.49 -0.36 0.85 16 38 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.10 1.07 6.66 -51.93 -0.35 0.72 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.12 1.67 5.01 -51.93 -0.26 1.41 16 43 H 0.18 2.08 7.50 -52.49 -0.39 1.68 16 44 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 45 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -32.27 379.20 -8.74 -41.01 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.95 Total: 8.29 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -4.51 Total: -10.02 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.62 Total: -50.90 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.06 Total: -9.03 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.27 -8.74 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889739143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.560 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds