Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47293 * 324.99715 * 7 6 4 9 9 C 1.50709 * 109.46913 * 205.00316 * 7 6 4 10 10 C 1.38679 * 120.41574 * 139.72252 * 9 7 6 11 11 C 1.38626 * 118.41410 * 179.78221 * 10 9 7 12 12 C 1.38223 * 119.16396 * 0.51022 * 11 10 9 13 13 N 1.31852 * 120.76380 * 359.72686 * 12 11 10 14 14 C 1.31880 * 121.72595 * 0.02562 * 13 12 11 15 15 C 1.52996 * 109.47401 * 85.00379 * 7 6 4 16 16 C 1.53003 * 117.49486 * 8.62084 * 15 7 6 17 17 C 1.52998 * 117.49689 * 299.99827 * 15 7 6 18 18 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 19 19 N 1.30448 * 108.01917 * 0.02562 * 18 3 2 20 20 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 21 21 C 1.46494 * 125.75336 * 0.23997 * 20 2 1 22 22 C 1.50700 * 109.47034 * 90.00525 * 21 20 2 23 23 H 1.08000 * 120.00118 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00281 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00547 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99883 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47427 * 90.00037 * 26 24 22 28 28 H 1.48504 * 109.47174 * 210.00251 * 26 24 22 29 29 H 1.48499 * 109.46966 * 330.00064 * 26 24 22 30 30 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 31 31 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 32 32 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 33 33 H 0.97001 * 120.00147 * 0.02562 * 6 4 3 34 34 H 1.07997 * 120.79099 * 0.02562 * 10 9 7 35 35 H 1.08007 * 120.41694 * 180.21746 * 11 10 9 36 36 H 1.08001 * 119.61839 * 179.74508 * 12 11 10 37 37 H 1.08001 * 119.62049 * 180.02562 * 14 13 12 38 38 H 1.09000 * 115.55042 * 154.32989 * 15 7 6 39 39 H 1.08996 * 117.50274 * 359.97438 * 16 15 7 40 40 H 1.09003 * 117.49899 * 145.02361 * 16 15 7 41 41 H 1.09000 * 117.49941 * 214.97558 * 17 15 7 42 42 H 1.09000 * 117.50181 * 359.97438 * 17 15 7 43 43 H 1.07998 * 125.98994 * 179.97438 * 18 3 2 44 44 H 1.09003 * 109.46965 * 209.99756 * 21 20 2 45 45 H 1.09000 * 109.47680 * 330.00516 * 21 20 2 46 46 H 0.96994 * 120.00485 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 1 1.4550 5.0046 -0.6035 9 6 3.4470 5.7704 -0.6083 10 6 3.1229 6.8122 -1.4643 11 6 4.1514 7.5806 -1.9873 12 6 5.4570 7.2782 -1.6491 13 7 5.7284 6.2766 -0.8357 14 6 4.7755 5.5278 -0.3158 15 6 2.0868 5.3627 1.4246 16 6 2.4891 4.4140 2.5555 17 6 1.0116 4.6076 2.2085 18 6 3.6591 0.6499 0.0063 19 7 3.6340 -0.6543 0.0092 20 7 2.3017 -1.0822 0.0059 21 6 1.8501 -2.4757 0.0085 22 6 1.7002 -2.9579 -1.4114 23 1 1.9190 -2.2926 -2.2335 24 6 1.2836 -4.2483 -1.6610 25 7 1.1523 -4.6689 -2.9001 26 14 0.9059 -5.3993 -0.2390 27 1 -0.5263 -5.2734 0.1327 28 1 1.1905 -6.7988 -0.6459 29 1 1.7532 -5.0407 0.9266 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 3.7461 3.2974 -0.0002 34 1 2.0935 7.0224 -1.7143 35 1 3.9354 8.4021 -2.6543 36 1 6.2643 7.8694 -2.0556 37 1 5.0363 4.7160 0.3471 38 1 2.1839 6.4330 1.6066 39 1 2.9511 3.4667 2.2774 40 1 2.8512 4.8600 3.4819 41 1 0.4016 5.1810 2.9066 42 1 0.5016 3.7881 1.7020 43 1 4.5449 1.2677 0.0075 44 1 2.5830 -3.0942 0.5267 45 1 0.8897 -2.5456 0.5192 46 1 0.8589 -5.5766 -3.0757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889739143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 82.574061 kcal Electronic energy + Delta-G solvation = -28972.194414 eV Core-core repulsion = 25056.581411 eV Total energy + Delta-G solvation = -3915.613002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41310 -41.51740 -40.29965 -38.00621 -35.80526 -35.24833 -34.05358 -33.48512 -32.84599 -32.26203 -29.78898 -28.51835 -27.53038 -25.01519 -24.64105 -23.57713 -23.44901 -23.09249 -21.59987 -20.79409 -20.47754 -19.29393 -18.73608 -18.02361 -17.49455 -17.21718 -16.94140 -16.54535 -16.38753 -15.90099 -15.59399 -15.45148 -15.36983 -14.79665 -14.76319 -14.41385 -14.20936 -14.14788 -13.94209 -13.89982 -13.73498 -13.70207 -13.13913 -13.05693 -12.89758 -12.72337 -12.56590 -12.30144 -12.15654 -11.86011 -11.74264 -11.34233 -11.01453 -10.92554 -10.76934 -10.71662 -10.33725 -10.27506 -10.08439 -9.89796 -9.46108 -8.43906 -6.56070 0.13015 0.34998 0.65553 1.30236 1.33400 1.34632 1.44758 1.61400 2.23939 2.25725 2.51888 2.85506 2.88516 2.98918 3.39741 3.68699 3.70582 3.71771 3.93461 3.96459 4.08908 4.09646 4.12296 4.18432 4.21944 4.26850 4.38285 4.46380 4.52647 4.64364 4.67831 4.70712 4.77001 4.86904 4.88770 5.03977 5.07721 5.12891 5.17103 5.19724 5.26386 5.29753 5.45031 5.54419 5.62462 5.76968 5.83097 6.20177 6.47020 6.55844 6.78857 7.03779 7.07971 7.33949 8.72655 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.002577 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.741131 B =10863.708144 C =11504.517474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.150 3.850 3 C -0.329 4.329 4 C 0.612 3.388 5 O -0.565 6.565 6 N -0.712 5.712 7 C 0.231 3.769 8 H 0.091 0.909 9 C -0.142 4.142 10 C -0.069 4.069 11 C -0.164 4.164 12 C 0.086 3.914 13 N -0.509 5.509 14 C 0.099 3.901 15 C -0.156 4.156 16 C -0.171 4.171 17 C -0.193 4.193 18 C 0.078 3.922 19 N -0.333 5.333 20 N -0.338 5.338 21 C 0.234 3.766 22 C -0.553 4.553 23 H 0.025 0.975 24 C 0.023 3.977 25 N -0.936 5.936 26 Si 0.949 3.051 27 H -0.251 1.251 28 H -0.278 1.278 29 H -0.242 1.242 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.407 0.593 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.222 0.778 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 25.285 9.048 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.014 3.986 3 C -0.344 4.344 4 C 0.402 3.598 5 O -0.446 6.446 6 N -0.364 5.364 7 C 0.125 3.875 8 H 0.109 0.891 9 C -0.145 4.145 10 C -0.096 4.096 11 C -0.184 4.184 12 C -0.071 4.071 13 N -0.217 5.217 14 C -0.058 4.058 15 C -0.175 4.175 16 C -0.208 4.208 17 C -0.229 4.229 18 C -0.109 4.109 19 N -0.152 5.152 20 N -0.115 5.115 21 C 0.114 3.886 22 C -0.591 4.591 23 H 0.044 0.956 24 C -0.177 4.177 25 N -0.574 5.574 26 Si 0.769 3.231 27 H -0.175 1.175 28 H -0.203 1.203 29 H -0.166 1.166 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.245 0.755 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.177 0.823 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.238 0.762 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.028 23.898 9.137 25.900 hybrid contribution -0.938 -0.218 -0.415 1.049 sum 3.090 23.680 8.722 25.424 Atomic orbital electron populations 1.20605 0.85608 1.04661 1.03804 1.21986 0.95991 0.86610 0.93978 1.19946 0.93104 0.93230 1.28133 1.16983 0.85137 0.83504 0.74225 1.90638 1.17478 1.84335 1.52168 1.45705 1.09874 1.04822 1.76015 1.19086 0.95219 0.78502 0.94654 0.89134 1.20784 0.95399 0.98563 0.99718 1.21794 1.01565 0.92971 0.93225 1.22463 0.93184 1.01463 1.01279 1.23297 0.97186 0.93459 0.93155 1.67730 1.37767 1.06256 1.09962 1.22673 0.88202 0.97871 0.97084 1.22649 1.05212 0.98353 0.91273 1.22966 0.97946 1.00937 0.98933 1.23290 0.92340 1.03880 1.03424 1.24463 0.97743 0.91670 0.97067 1.77098 0.98066 1.14427 1.25612 1.48759 1.03493 1.07324 1.51912 1.19886 0.96798 0.74585 0.97346 1.21187 1.48148 0.98828 0.90970 0.95620 1.25819 0.93634 0.99196 0.99047 1.70022 1.46672 1.18990 1.21680 0.85710 0.80494 0.77816 0.79048 1.17545 1.20292 1.16556 0.90514 0.90258 0.87482 0.75533 0.82892 0.81738 0.80587 0.82252 0.86120 0.89249 0.87928 0.88437 0.88547 0.76210 0.92621 0.91085 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.03 9.56 71.24 0.68 -2.35 16 2 C 0.15 5.80 7.01 42.14 0.30 6.10 16 3 C -0.33 -11.05 6.13 -20.15 -0.12 -11.17 16 4 C 0.61 17.70 6.65 86.66 0.58 18.28 16 5 O -0.57 -18.64 11.87 -4.04 -0.05 -18.69 16 6 N -0.71 -14.89 3.56 -449.37 -1.60 -16.49 16 7 C 0.23 4.22 2.66 44.25 0.12 4.34 16 8 H 0.09 1.93 7.47 -2.39 -0.02 1.91 16 9 C -0.14 -2.26 4.95 -19.77 -0.10 -2.36 16 10 C -0.07 -0.91 9.82 22.47 0.22 -0.69 16 11 C -0.16 -1.82 10.11 22.36 0.23 -1.59 16 12 C 0.09 1.19 11.18 84.69 0.95 2.13 16 13 N -0.51 -9.53 10.36 -195.85 -2.03 -11.56 16 14 C 0.10 1.68 10.23 84.67 0.87 2.54 16 15 C -0.16 -2.66 5.69 -10.79 -0.06 -2.72 16 16 C -0.17 -3.09 9.73 30.60 0.30 -2.79 16 17 C -0.19 -3.99 9.82 30.60 0.30 -3.69 16 18 C 0.08 2.49 11.50 85.65 0.99 3.47 16 19 N -0.33 -13.77 12.50 -56.28 -0.70 -14.48 16 20 N -0.34 -14.75 3.56 -336.70 -1.20 -15.95 16 21 C 0.23 10.77 5.04 85.63 0.43 11.20 16 22 C -0.55 -31.18 9.94 25.60 0.25 -30.92 16 23 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 24 C 0.02 1.29 5.47 84.65 0.46 1.75 16 25 N -0.94 -56.47 13.96 21.45 0.30 -56.17 16 26 Si 0.95 40.17 27.47 68.60 1.88 42.05 16 27 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 30 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.08 2.50 7.04 -2.39 -0.02 2.49 16 32 H 0.11 3.36 6.51 -2.39 -0.02 3.34 16 33 H 0.41 6.96 5.85 -92.71 -0.54 6.41 16 34 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.16 2.26 6.93 -2.91 -0.02 2.24 16 38 H 0.12 1.74 8.11 -2.39 -0.02 1.72 16 39 H 0.09 1.79 6.66 -2.39 -0.02 1.77 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 2.60 5.01 -2.39 -0.01 2.58 16 43 H 0.22 4.64 7.50 -2.91 -0.02 4.62 16 44 H 0.06 2.54 7.20 -2.39 -0.02 2.52 16 45 H 0.07 2.92 6.44 -2.39 -0.02 2.90 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.69 379.20 3.41 -70.28 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.43 Total: 29.46 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.38 Total: -8.47 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.23 Total: -114.63 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.88 Total: 42.05 kcal Total: -73.69 3.41 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889739143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.854 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds