Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38045 * 126.29314 * 2 1 4 4 C 1.47434 * 126.41227 * 359.92881 * 3 2 1 5 5 O 1.21612 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00007 * 179.72449 * 4 3 2 7 7 C 1.47020 * 125.64965 * 0.29869 * 6 4 3 8 8 C 1.54327 * 107.27299 * 181.02505 * 7 6 4 9 9 C 1.55154 * 102.93998 * 22.19106 * 8 7 6 10 10 H 1.09007 * 111.00231 * 82.58032 * 9 8 7 11 11 C 1.50706 * 111.00280 * 206.42333 * 9 8 7 12 12 C 1.38228 * 119.61746 * 36.43287 * 11 9 8 13 13 C 1.38618 * 119.16029 * 179.75408 * 12 11 9 14 14 C 1.38679 * 118.42324 * 0.50561 * 13 12 11 15 15 C 1.38185 * 119.15947 * 359.73770 * 14 13 12 16 16 N 1.31849 * 119.61733 * 216.70031 * 11 9 8 17 17 C 1.47427 * 125.64621 * 179.97438 * 6 4 3 18 18 C 1.41285 * 107.17694 * 180.18953 * 3 2 1 19 19 N 1.30457 * 108.01897 * 359.61618 * 18 3 2 20 20 N 1.34256 * 126.29165 * 179.97438 * 2 1 3 21 21 C 1.46492 * 125.75503 * 0.05307 * 20 2 1 22 22 C 1.50703 * 109.47179 * 90.00269 * 21 20 2 23 23 H 1.08005 * 119.99608 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00640 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99386 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00372 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47490 * 119.99857 * 26 24 22 29 29 H 1.48501 * 109.46746 * 240.00265 * 26 24 22 30 30 H 1.08999 * 109.46685 * 90.00001 * 1 2 3 31 31 H 1.09000 * 109.46613 * 210.00085 * 1 2 3 32 32 H 1.09002 * 109.46795 * 329.99804 * 1 2 3 33 33 H 1.09004 * 109.88084 * 300.44223 * 7 6 4 34 34 H 1.08996 * 109.88259 * 61.44698 * 7 6 4 35 35 H 1.08996 * 110.71882 * 140.55753 * 8 7 6 36 36 H 1.08994 * 110.71632 * 263.83135 * 8 7 6 37 37 H 1.08002 * 120.41506 * 359.97438 * 12 11 9 38 38 H 1.08005 * 120.79407 * 180.21817 * 13 12 11 39 39 H 1.07990 * 120.42152 * 179.75207 * 14 13 12 40 40 H 1.08000 * 119.61732 * 180.02562 * 15 14 13 41 41 H 1.09001 * 110.36270 * 274.74017 * 17 6 4 42 42 H 1.08994 * 110.37132 * 37.06820 * 17 6 4 43 43 H 1.07992 * 125.99514 * 179.77048 * 18 3 2 44 44 H 1.09002 * 109.47675 * 209.99723 * 21 20 2 45 45 H 1.08994 * 109.47418 * 330.00510 * 21 20 2 46 46 H 0.97001 * 119.99538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0015 5 8 0.6995 2.7878 -0.0033 6 7 2.7999 3.5107 0.0043 7 6 4.2590 3.3301 0.0061 8 6 4.8946 4.7360 0.0396 9 6 3.7597 5.6166 0.6257 10 1 3.7398 5.5552 1.7139 11 6 3.8956 7.0468 0.1701 12 6 4.3431 7.3164 -1.1096 13 6 4.4597 8.6352 -1.5205 14 6 4.1305 9.6383 -0.6213 15 6 3.6950 9.2923 0.6437 16 7 3.5914 8.0263 0.9986 17 6 2.5022 4.9546 0.0031 18 6 3.6591 0.6500 -0.0045 19 7 3.6341 -0.6544 0.0014 20 7 2.3017 -1.0821 0.0005 21 6 1.8501 -2.4757 0.0000 22 6 1.6964 -2.9535 -1.4210 23 1 1.9138 -2.2858 -2.2416 24 6 1.2783 -4.2428 -1.6735 25 7 1.0141 -5.0559 -0.6742 26 14 1.0884 -4.8352 -3.4349 27 1 1.4457 -3.7364 -4.3678 28 1 1.9873 -5.9941 -3.6670 29 1 -0.3193 -5.2455 -3.6700 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.5615 2.7654 0.8880 34 1 4.5683 2.8022 -0.8959 35 1 5.7683 4.7488 0.6911 36 1 5.1573 5.0644 -0.9660 37 1 4.5953 6.5097 -1.7820 38 1 4.8033 8.8759 -2.5157 39 1 4.2132 10.6767 -0.9061 40 1 3.4363 10.0675 1.3497 41 1 2.3490 5.3094 -1.0161 42 1 1.6235 5.1614 0.6139 43 1 4.5449 1.2677 -0.0091 44 1 2.5844 -3.0958 0.5143 45 1 0.8911 -2.5471 0.5130 46 1 0.7195 -5.9629 -0.8518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890398330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 79.618767 kcal Electronic energy + Delta-G solvation = -28425.929943 eV Core-core repulsion = 24510.188790 eV Total energy + Delta-G solvation = -3915.741154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01829 -40.64189 -39.23846 -37.18824 -33.97830 -33.28868 -32.78980 -32.03241 -31.13697 -30.30418 -29.13792 -27.21831 -26.66216 -24.52959 -24.09190 -23.39774 -23.06060 -21.06587 -20.83120 -19.86830 -18.40417 -17.49659 -17.06826 -16.81314 -16.55371 -15.91678 -15.51207 -15.40711 -15.11304 -14.65104 -14.50790 -14.33726 -13.92991 -13.72536 -13.57675 -13.40003 -13.28587 -12.76169 -12.69673 -12.45815 -12.38964 -12.13366 -12.00078 -11.83341 -11.60145 -11.47503 -11.33188 -11.09560 -11.02526 -10.90027 -10.36762 -10.24214 -10.17147 -9.90537 -9.77848 -9.43705 -9.28376 -8.71305 -8.65293 -8.50724 -7.89150 -6.33460 -4.41009 0.70868 0.91325 2.19277 2.81733 3.00548 3.16953 3.24890 3.29295 3.38218 3.43690 3.81593 3.92972 4.18228 4.24500 4.39937 4.48096 4.53223 4.68645 4.75179 4.76145 5.00754 5.06958 5.08322 5.18443 5.23243 5.25018 5.37764 5.45424 5.49856 5.56161 5.64749 5.68346 5.75372 5.80843 5.82324 5.90111 5.97368 6.14126 6.29746 6.34914 6.50777 6.58114 6.82026 6.91982 7.17883 7.56932 7.64436 7.69645 7.77677 7.79829 8.38655 8.57691 8.65117 9.25819 10.74826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002071 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.839959 B =13519.704570 C =13627.330126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.329 4.329 4 C 0.620 3.380 5 O -0.553 6.553 6 N -0.621 5.621 7 C 0.097 3.903 8 C -0.128 4.128 9 C -0.055 4.055 10 H 0.106 0.894 11 C 0.145 3.855 12 C -0.168 4.168 13 C -0.073 4.073 14 C -0.179 4.179 15 C 0.102 3.898 16 N -0.481 5.481 17 C 0.125 3.875 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.313 5.313 21 C 0.250 3.750 22 C -0.538 4.538 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.185 0.815 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 26.121 0.901 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.344 4.344 4 C 0.413 3.587 5 O -0.432 6.432 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.075 4.075 10 H 0.124 0.876 11 C 0.007 3.993 12 C -0.187 4.187 13 C -0.099 4.099 14 C -0.199 4.199 15 C -0.055 4.055 16 N -0.189 5.189 17 C 0.002 3.998 18 C -0.141 4.141 19 N -0.117 5.117 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.577 4.577 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.202 0.798 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.573 24.517 1.803 25.723 hybrid contribution -0.061 0.570 -1.868 1.954 sum 7.512 25.087 -0.064 26.187 Atomic orbital electron populations 1.20571 0.86802 1.03782 1.03923 1.21456 0.94941 0.86504 0.94276 1.19565 0.93210 0.92118 1.29494 1.16985 0.84015 0.83218 0.74455 1.90705 1.16182 1.84093 1.52224 1.48097 1.06225 1.05455 1.75819 1.22334 0.80756 0.97082 1.02455 1.22894 0.97693 0.93728 1.02326 1.21300 0.95890 0.88247 1.02069 0.87599 1.20879 0.93912 0.94361 0.90137 1.22034 1.01592 0.97706 0.97397 1.21615 0.95883 0.92637 0.99751 1.22165 1.01660 1.00682 0.95393 1.22768 0.94871 0.93067 0.94825 1.67487 1.14705 1.00398 1.36350 1.22097 0.96990 0.80144 1.00589 1.24360 0.96908 0.92621 1.00249 1.77156 0.98583 1.12375 1.23575 1.49374 1.02550 1.08267 1.48825 1.19857 0.96428 0.70945 0.99454 1.21285 1.47255 0.98129 0.91014 0.91627 1.24929 0.94485 0.96013 0.98304 1.69924 1.44566 1.07148 1.31052 0.86268 0.77960 0.78826 0.83462 1.19543 1.20572 1.20552 0.89834 0.90843 0.88847 0.90467 0.90478 0.89371 0.89906 0.84345 0.84745 0.84813 0.82691 0.91625 0.89953 0.79823 0.92498 0.92559 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.57 36.01 0.34 -1.37 16 2 C 0.17 3.44 7.01 -81.60 -0.57 2.87 16 3 C -0.33 -6.19 6.09 -105.07 -0.64 -6.83 16 4 C 0.62 10.86 7.85 -12.52 -0.10 10.76 16 5 O -0.55 -11.05 15.09 5.27 0.08 -10.97 16 6 N -0.62 -8.26 3.32 -171.63 -0.57 -8.83 16 7 C 0.10 0.94 4.99 -3.06 -0.02 0.92 16 8 C -0.13 -0.91 6.26 -24.90 -0.16 -1.07 16 9 C -0.06 -0.49 3.42 -89.49 -0.31 -0.80 16 10 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 11 C 0.15 1.32 5.89 -82.59 -0.49 0.83 16 12 C -0.17 -1.24 8.97 -39.44 -0.35 -1.59 16 13 C -0.07 -0.46 10.18 -39.28 -0.40 -0.86 16 14 C -0.18 -1.10 10.11 -39.44 -0.40 -1.49 16 15 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 16 N -0.48 -4.84 10.27 -9.47 -0.10 -4.93 16 17 C 0.13 1.43 6.36 -2.40 -0.02 1.41 16 18 C 0.05 0.80 10.44 -16.98 -0.18 0.62 16 19 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 20 N -0.31 -7.16 3.56 -57.78 -0.21 -7.36 16 21 C 0.25 6.27 5.97 -5.20 -0.03 6.24 16 22 C -0.54 -14.56 9.39 -34.44 -0.32 -14.89 16 23 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 26 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.32 7.05 -51.93 -0.37 0.95 16 32 H 0.09 1.66 6.50 -51.93 -0.34 1.32 16 33 H 0.08 0.72 6.84 -51.93 -0.36 0.37 16 34 H 0.08 0.72 6.98 -51.93 -0.36 0.36 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.49 5.82 -51.93 -0.30 0.19 16 37 H 0.14 0.81 6.27 -52.49 -0.33 0.48 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 42 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 43 H 0.19 2.41 4.47 -52.49 -0.23 2.17 16 44 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -32.99 377.76 -8.91 -41.90 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.98 Total: 1.58 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.92 Total: -2.97 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.25 Total: -51.09 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -8.91 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890398330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.519 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds