Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38045 * 126.29314 * 2 1 4 4 C 1.47434 * 126.41227 * 359.92881 * 3 2 1 5 5 O 1.21612 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00007 * 179.72449 * 4 3 2 7 7 C 1.47020 * 125.64965 * 0.29869 * 6 4 3 8 8 C 1.54327 * 107.27299 * 181.02505 * 7 6 4 9 9 C 1.55154 * 102.93998 * 22.19106 * 8 7 6 10 10 H 1.09007 * 111.00231 * 82.58032 * 9 8 7 11 11 C 1.50706 * 111.00280 * 206.42333 * 9 8 7 12 12 C 1.38228 * 119.61746 * 36.43287 * 11 9 8 13 13 C 1.38618 * 119.16029 * 179.75408 * 12 11 9 14 14 C 1.38679 * 118.42324 * 0.50561 * 13 12 11 15 15 C 1.38185 * 119.15947 * 359.73770 * 14 13 12 16 16 N 1.31849 * 119.61733 * 216.70031 * 11 9 8 17 17 C 1.47427 * 125.64621 * 179.97438 * 6 4 3 18 18 C 1.41285 * 107.17694 * 180.18953 * 3 2 1 19 19 N 1.30457 * 108.01897 * 359.61618 * 18 3 2 20 20 N 1.34256 * 126.29165 * 179.97438 * 2 1 3 21 21 C 1.46492 * 125.75503 * 0.05307 * 20 2 1 22 22 C 1.50703 * 109.47179 * 90.00269 * 21 20 2 23 23 H 1.08005 * 119.99608 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00640 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99386 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00372 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46918 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47490 * 119.99857 * 26 24 22 29 29 H 1.48501 * 109.46746 * 240.00265 * 26 24 22 30 30 H 1.08999 * 109.46685 * 90.00001 * 1 2 3 31 31 H 1.09000 * 109.46613 * 210.00085 * 1 2 3 32 32 H 1.09002 * 109.46795 * 329.99804 * 1 2 3 33 33 H 1.09004 * 109.88084 * 300.44223 * 7 6 4 34 34 H 1.08996 * 109.88259 * 61.44698 * 7 6 4 35 35 H 1.08996 * 110.71882 * 140.55753 * 8 7 6 36 36 H 1.08994 * 110.71632 * 263.83135 * 8 7 6 37 37 H 1.08002 * 120.41506 * 359.97438 * 12 11 9 38 38 H 1.08005 * 120.79407 * 180.21817 * 13 12 11 39 39 H 1.07990 * 120.42152 * 179.75207 * 14 13 12 40 40 H 1.08000 * 119.61732 * 180.02562 * 15 14 13 41 41 H 1.09001 * 110.36270 * 274.74017 * 17 6 4 42 42 H 1.08994 * 110.37132 * 37.06820 * 17 6 4 43 43 H 1.07992 * 125.99514 * 179.77048 * 18 3 2 44 44 H 1.09002 * 109.47675 * 209.99723 * 21 20 2 45 45 H 1.08994 * 109.47418 * 330.00510 * 21 20 2 46 46 H 0.97001 * 119.99538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0015 5 8 0.6995 2.7878 -0.0033 6 7 2.7999 3.5107 0.0043 7 6 4.2590 3.3301 0.0061 8 6 4.8946 4.7360 0.0396 9 6 3.7597 5.6166 0.6257 10 1 3.7398 5.5552 1.7139 11 6 3.8956 7.0468 0.1701 12 6 4.3431 7.3164 -1.1096 13 6 4.4597 8.6352 -1.5205 14 6 4.1305 9.6383 -0.6213 15 6 3.6950 9.2923 0.6437 16 7 3.5914 8.0263 0.9986 17 6 2.5022 4.9546 0.0031 18 6 3.6591 0.6500 -0.0045 19 7 3.6341 -0.6544 0.0014 20 7 2.3017 -1.0821 0.0005 21 6 1.8501 -2.4757 0.0000 22 6 1.6964 -2.9535 -1.4210 23 1 1.9138 -2.2858 -2.2416 24 6 1.2783 -4.2428 -1.6735 25 7 1.0141 -5.0559 -0.6742 26 14 1.0884 -4.8352 -3.4349 27 1 1.4457 -3.7364 -4.3678 28 1 1.9873 -5.9941 -3.6670 29 1 -0.3193 -5.2455 -3.6700 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.5615 2.7654 0.8880 34 1 4.5683 2.8022 -0.8959 35 1 5.7683 4.7488 0.6911 36 1 5.1573 5.0644 -0.9660 37 1 4.5953 6.5097 -1.7820 38 1 4.8033 8.8759 -2.5157 39 1 4.2132 10.6767 -0.9061 40 1 3.4363 10.0675 1.3497 41 1 2.3490 5.3094 -1.0161 42 1 1.6235 5.1614 0.6139 43 1 4.5449 1.2677 -0.0091 44 1 2.5844 -3.0958 0.5143 45 1 0.8911 -2.5471 0.5130 46 1 0.7195 -5.9629 -0.8518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890398330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 59.402090 kcal Electronic energy + Delta-G solvation = -28426.806604 eV Core-core repulsion = 24510.188790 eV Total energy + Delta-G solvation = -3916.617814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40770 -41.42532 -40.31950 -38.31440 -35.84009 -34.34087 -33.64612 -33.32214 -32.73167 -31.07380 -30.17575 -28.82250 -28.18698 -25.71450 -25.11892 -24.62205 -23.82196 -22.37294 -21.65979 -21.18257 -19.84012 -18.87334 -18.26328 -18.06149 -17.37981 -16.94010 -16.69679 -16.54756 -16.39443 -16.10729 -15.82624 -15.23785 -15.01474 -14.84573 -14.45279 -14.35839 -14.33878 -14.09297 -13.90300 -13.83175 -13.68112 -13.52856 -13.42090 -13.11913 -12.96946 -12.71648 -12.57354 -12.35191 -12.32037 -12.15367 -11.84499 -11.74470 -11.66565 -10.85050 -10.76875 -10.76730 -10.33299 -10.28056 -9.86934 -9.76979 -9.39079 -8.38430 -6.54613 0.18218 0.41322 0.64555 1.31038 1.36095 1.38336 1.49304 1.63621 2.04119 2.32159 2.47761 2.82791 2.93733 3.24869 3.51740 3.57152 3.72464 3.85134 3.97863 4.04760 4.08822 4.17158 4.19878 4.22132 4.26869 4.32393 4.39949 4.46989 4.59651 4.65920 4.74280 4.76420 4.80686 4.84781 4.88582 4.94754 5.04005 5.06975 5.14441 5.17800 5.32250 5.34962 5.40567 5.49026 5.66758 5.74254 5.83725 6.03012 6.50194 6.54388 6.81505 7.10065 7.16355 7.23860 8.69765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002071 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.839959 B =13519.704570 C =13627.330126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.616 3.384 5 O -0.586 6.586 6 N -0.615 5.615 7 C 0.084 3.916 8 C -0.114 4.114 9 C -0.045 4.045 10 H 0.095 0.905 11 C 0.125 3.875 12 C -0.171 4.171 13 C -0.077 4.077 14 C -0.174 4.174 15 C 0.084 3.916 16 N -0.516 5.516 17 C 0.125 3.875 18 C 0.069 3.931 19 N -0.334 5.334 20 N -0.336 5.336 21 C 0.266 3.734 22 C -0.554 4.554 23 H 0.051 0.949 24 C 0.023 3.977 25 N -0.916 5.916 26 Si 0.973 3.027 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.231 0.769 44 H 0.033 0.967 45 H 0.050 0.950 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 28.303 -0.721 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.343 4.343 4 C 0.408 3.592 5 O -0.468 6.468 6 N -0.347 5.347 7 C -0.038 4.038 8 C -0.151 4.151 9 C -0.065 4.065 10 H 0.113 0.887 11 C -0.012 4.012 12 C -0.191 4.191 13 C -0.102 4.102 14 C -0.194 4.194 15 C -0.072 4.072 16 N -0.225 5.225 17 C 0.002 3.998 18 C -0.118 4.118 19 N -0.154 5.154 20 N -0.113 5.113 21 C 0.148 3.852 22 C -0.592 4.592 23 H 0.070 0.930 24 C -0.179 4.179 25 N -0.554 5.554 26 Si 0.797 3.203 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.194 1.194 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.172 0.828 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.247 0.753 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.391 26.735 0.194 28.337 hybrid contribution -0.570 0.106 -1.323 1.445 sum 8.822 26.841 -1.130 28.276 Atomic orbital electron populations 1.20542 0.85910 1.03970 1.03937 1.21929 0.95911 0.86719 0.94499 1.19829 0.93495 0.92559 1.28392 1.16841 0.84155 0.83397 0.74822 1.90681 1.17673 1.84502 1.53952 1.48081 1.07461 1.05521 1.73665 1.22651 0.78440 0.99333 1.03335 1.22894 0.97277 0.91117 1.03849 1.21142 0.95160 0.88876 1.01299 0.88699 1.20878 0.95377 0.93934 0.91055 1.22238 1.01117 0.98907 0.96801 1.22016 0.95110 0.92174 1.00937 1.22504 1.00094 1.02208 0.94585 1.23165 0.95189 0.92710 0.96170 1.67424 1.15892 1.01584 1.37622 1.22179 0.97719 0.79138 1.00807 1.25095 0.97958 0.91572 0.97141 1.77113 0.98236 1.14377 1.25651 1.49124 1.03428 1.07711 1.51056 1.19390 0.95334 0.72290 0.98232 1.21408 1.47830 0.98470 0.91489 0.93026 1.25742 0.93846 0.95946 1.02331 1.70004 1.44849 1.07606 1.32989 0.85280 0.78428 0.78191 0.78434 1.19704 1.19772 1.19417 0.89848 0.90898 0.88259 0.89698 0.89305 0.87228 0.88000 0.82776 0.82080 0.82093 0.81100 0.90973 0.92188 0.75280 0.94900 0.93197 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 9.57 71.24 0.68 -2.59 16 2 C 0.15 6.18 7.01 42.14 0.30 6.47 16 3 C -0.33 -12.24 6.09 -20.15 -0.12 -12.36 16 4 C 0.62 21.36 7.85 86.67 0.68 22.04 16 5 O -0.59 -23.74 15.09 -4.07 -0.06 -23.80 16 6 N -0.61 -15.55 3.32 -815.17 -2.71 -18.26 16 7 C 0.08 1.38 4.99 86.73 0.43 1.81 16 8 C -0.11 -1.24 6.26 31.78 0.20 -1.04 16 9 C -0.04 -0.74 3.42 -10.06 -0.03 -0.77 16 10 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 11 C 0.13 2.08 5.89 42.56 0.25 2.33 16 12 C -0.17 -2.06 8.97 22.36 0.20 -1.86 16 13 C -0.08 -0.71 10.18 22.47 0.23 -0.49 16 14 C -0.17 -1.65 10.11 22.36 0.23 -1.43 16 15 C 0.08 1.15 11.18 84.67 0.95 2.10 16 16 N -0.52 -9.93 10.27 -183.88 -1.89 -11.82 16 17 C 0.12 2.75 6.36 86.94 0.55 3.30 16 18 C 0.07 2.33 10.44 85.65 0.89 3.23 16 19 N -0.33 -14.50 12.50 -56.28 -0.70 -15.20 16 20 N -0.34 -15.78 3.56 -336.72 -1.20 -16.98 16 21 C 0.27 13.88 5.97 85.64 0.51 14.39 16 22 C -0.55 -30.70 9.39 25.60 0.24 -30.46 16 23 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 24 C 0.02 1.23 5.46 84.65 0.46 1.69 16 25 N -0.92 -51.44 13.29 21.45 0.28 -51.16 16 26 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.07 2.73 7.05 -2.39 -0.02 2.72 16 32 H 0.10 3.64 6.50 -2.39 -0.02 3.63 16 33 H 0.08 1.31 6.84 -2.39 -0.02 1.29 16 34 H 0.09 1.32 6.98 -2.39 -0.02 1.30 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.77 5.82 -2.39 -0.01 0.76 16 37 H 0.15 1.25 6.27 -2.91 -0.02 1.23 16 38 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.16 0.56 8.06 -2.92 -0.02 0.54 16 40 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 42 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 43 H 0.23 5.29 4.47 -2.91 -0.01 5.28 16 44 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 2.61 7.01 -2.39 -0.02 2.59 16 46 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.79 377.76 3.41 -70.38 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.01 Total: 15.63 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.64 Total: 6.37 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -6.22 Total: -113.43 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.79 3.41 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890398330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.786 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds