Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38047 * 126.29461 * 2 1 4 4 C 1.47427 * 126.41065 * 0.02562 * 3 2 1 5 5 O 1.21605 * 120.00383 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99755 * 179.71238 * 4 3 2 7 7 C 1.47019 * 125.64691 * 359.69191 * 6 4 3 8 8 C 1.54337 * 107.26147 * 178.85174 * 7 6 4 9 9 C 1.55150 * 103.02027 * 338.13566 * 8 7 6 10 10 H 1.09004 * 111.03943 * 277.21557 * 9 8 7 11 11 C 1.50706 * 111.00055 * 153.38430 * 9 8 7 12 12 C 1.38677 * 120.41564 * 126.35202 * 11 9 8 13 13 C 1.38629 * 118.41888 * 179.97438 * 12 11 9 14 14 C 1.38232 * 119.15912 * 0.02562 * 13 12 11 15 15 N 1.31854 * 120.76629 * 0.02562 * 14 13 12 16 16 C 1.31883 * 121.72330 * 359.69688 * 15 14 13 17 17 C 1.47426 * 125.64612 * 179.97438 * 6 4 3 18 18 C 1.41293 * 107.17071 * 179.73617 * 3 2 1 19 19 N 1.30439 * 108.02392 * 0.24412 * 18 3 2 20 20 N 1.34269 * 126.29315 * 180.15363 * 2 1 3 21 21 C 1.46496 * 125.75074 * 0.02562 * 20 2 1 22 22 C 1.50701 * 109.47010 * 270.26997 * 21 20 2 23 23 H 1.08004 * 120.00208 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00209 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99792 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00252 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47029 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47134 * 119.99781 * 26 24 22 29 29 H 1.48498 * 109.47083 * 239.99516 * 26 24 22 30 30 H 1.09004 * 109.47401 * 89.99750 * 1 2 3 31 31 H 1.09000 * 109.47540 * 209.99869 * 1 2 3 32 32 H 1.09001 * 109.47330 * 330.00068 * 1 2 3 33 33 H 1.09000 * 109.88145 * 298.39274 * 7 6 4 34 34 H 1.08997 * 109.88249 * 59.56115 * 7 6 4 35 35 H 1.09007 * 110.84502 * 219.66866 * 8 7 6 36 36 H 1.09002 * 110.51530 * 96.45144 * 8 7 6 37 37 H 1.07997 * 120.79052 * 0.02562 * 12 11 9 38 38 H 1.07998 * 120.42391 * 180.02562 * 13 12 11 39 39 H 1.08005 * 119.61194 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.61805 * 180.31466 * 16 15 14 41 41 H 1.09000 * 110.36316 * 322.92768 * 17 6 4 42 42 H 1.08994 * 110.36888 * 85.14317 * 17 6 4 43 43 H 1.08007 * 125.98357 * 180.26004 * 18 3 2 44 44 H 1.08995 * 109.47441 * 30.26659 * 21 20 2 45 45 H 1.08997 * 109.47437 * 150.27231 * 21 20 2 46 46 H 0.97007 * 120.00137 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.8000 3.5107 0.0063 7 6 4.2589 3.3299 0.0189 8 6 4.8948 4.7360 -0.0080 9 6 3.7639 5.6199 -0.5970 10 1 3.7511 5.5650 -1.6856 11 6 3.8968 7.0474 -0.1326 12 6 3.9334 8.0845 -1.0526 13 6 4.0561 9.3818 -0.5798 14 6 4.1378 9.5970 0.7832 15 7 4.1008 8.5862 1.6291 16 6 3.9794 7.3399 1.2153 17 6 2.5024 4.9546 0.0070 18 6 3.6590 0.6497 0.0062 19 7 3.6340 -0.6544 0.0044 20 7 2.3017 -1.0822 -0.0029 21 6 1.8500 -2.4758 -0.0072 22 6 1.6883 -2.9558 1.4122 23 1 1.9003 -2.2892 2.2351 24 6 1.2697 -4.2458 1.6602 25 7 1.0111 -5.0573 0.6582 26 14 1.0699 -4.8410 3.4196 27 1 1.4219 -3.7438 4.3563 28 1 -0.3389 -5.2528 3.6459 29 1 1.9682 -5.9997 3.6551 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 4.5593 2.8024 0.9242 34 1 4.5704 2.7674 -0.8612 35 1 5.7730 4.7523 -0.6536 36 1 5.1507 5.0588 1.0012 37 1 3.8671 7.8861 -2.1121 38 1 4.0874 10.2139 -1.2676 39 1 4.2331 10.6049 1.1596 40 1 3.9476 6.5382 1.9383 41 1 1.6302 5.1624 -0.6129 42 1 2.3362 5.3072 1.0249 43 1 4.5449 1.2676 0.0118 44 1 0.8939 -2.5463 -0.5257 45 1 2.5871 -3.0951 -0.5183 46 1 0.7162 -5.9649 0.8326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892225200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 75.606980 kcal Electronic energy + Delta-G solvation = -28422.783086 eV Core-core repulsion = 24506.867969 eV Total energy + Delta-G solvation = -3915.915118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03286 -40.64580 -39.28579 -37.26786 -34.06534 -33.59980 -32.45237 -32.02057 -31.14892 -30.36779 -29.03990 -27.18271 -26.67284 -24.57147 -24.02084 -23.45330 -23.12464 -21.10187 -20.80694 -19.89207 -18.42820 -17.64427 -17.10350 -16.84794 -16.59677 -16.07523 -15.43197 -15.28173 -14.94777 -14.65064 -14.53374 -14.24244 -13.92137 -13.75919 -13.65165 -13.43229 -13.39360 -12.83383 -12.64349 -12.55898 -12.46471 -12.21657 -12.06642 -11.86003 -11.73075 -11.48341 -11.31111 -11.10163 -11.08217 -10.91650 -10.37494 -10.18167 -10.15824 -9.91720 -9.78452 -9.44649 -9.27389 -8.72410 -8.67431 -8.52744 -7.91403 -6.34476 -4.42325 0.70205 0.90209 2.16827 2.79758 3.00178 3.16555 3.24642 3.29103 3.39747 3.42730 3.84927 4.02125 4.21993 4.23903 4.32792 4.33516 4.53048 4.58276 4.68742 4.80667 4.99374 5.01959 5.04628 5.15830 5.18290 5.22460 5.36820 5.43537 5.47879 5.54998 5.65582 5.65805 5.73206 5.76581 5.78889 5.88602 5.96847 6.09493 6.29837 6.33987 6.52409 6.59578 6.79238 6.89644 7.16478 7.55892 7.61314 7.66564 7.76472 7.78335 8.37001 8.55013 8.64126 9.24802 10.73677 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002065 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.054801 B =13554.506606 C =13636.532876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.166 3.834 3 C -0.329 4.329 4 C 0.620 3.380 5 O -0.553 6.553 6 N -0.622 5.622 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.060 4.060 10 H 0.096 0.904 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.171 4.171 14 C 0.092 3.908 15 N -0.482 5.482 16 C 0.105 3.895 17 C 0.120 3.880 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.313 5.313 21 C 0.250 3.750 22 C -0.540 4.540 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.185 0.815 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 25.362 -4.657 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 C -0.344 4.344 4 C 0.413 3.587 5 O -0.432 6.432 6 N -0.357 5.357 7 C -0.027 4.027 8 C -0.163 4.163 9 C -0.080 4.080 10 H 0.115 0.885 11 C -0.123 4.123 12 C -0.096 4.096 13 C -0.191 4.191 14 C -0.065 4.065 15 N -0.191 5.191 16 C -0.052 4.052 17 C -0.003 4.003 18 C -0.142 4.142 19 N -0.117 5.117 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.202 0.798 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.136 24.127 -3.806 25.447 hybrid contribution -0.426 0.114 -0.058 0.444 sum 6.711 24.241 -3.864 25.448 Atomic orbital electron populations 1.20613 0.86840 1.04861 1.03270 1.21459 0.94947 0.86475 0.94238 1.19574 0.93226 0.92141 1.29494 1.16989 0.84011 0.83243 0.74442 1.90703 1.16192 1.84094 1.52241 1.48112 1.06228 1.05479 1.75836 1.22348 0.80742 0.97221 1.02410 1.22832 0.97627 0.93606 1.02266 1.21279 0.95844 0.89761 1.01101 0.88521 1.20620 1.01359 0.95446 0.94845 1.21537 0.95683 0.92191 1.00172 1.22158 1.01913 0.97721 0.97304 1.22804 0.95423 0.98354 0.89888 1.67732 1.11659 0.99948 1.39712 1.22691 0.94809 0.93895 0.93764 1.22154 0.96978 0.80257 1.00896 1.24360 0.96906 0.92622 1.00278 1.77145 0.98634 1.12383 1.23494 1.49392 1.02534 1.08274 1.48823 1.19857 0.96429 0.70943 0.99452 1.21296 1.47346 0.98128 0.91046 0.91594 1.24931 0.94466 0.96011 0.98299 1.69925 1.44569 1.07182 1.30985 0.86270 0.77975 0.78854 0.83440 1.19511 1.20535 1.20568 0.90515 0.89853 0.88654 0.90477 0.90569 0.89506 0.90120 0.84711 0.84741 0.82829 0.82703 0.90175 0.91464 0.79842 0.92562 0.92477 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.34 36.00 0.34 -1.45 16 2 C 0.17 3.42 7.01 -81.60 -0.57 2.85 16 3 C -0.33 -6.12 6.09 -105.07 -0.64 -6.76 16 4 C 0.62 10.61 7.85 -12.52 -0.10 10.51 16 5 O -0.55 -10.81 15.10 5.27 0.08 -10.73 16 6 N -0.62 -7.91 3.33 -171.79 -0.57 -8.48 16 7 C 0.10 0.89 4.98 -3.06 -0.02 0.88 16 8 C -0.13 -0.83 6.35 -24.89 -0.16 -0.99 16 9 C -0.06 -0.44 3.28 -89.64 -0.29 -0.73 16 10 H 0.10 0.64 8.01 -51.93 -0.42 0.22 16 11 C -0.12 -0.89 5.01 -104.48 -0.52 -1.41 16 12 C -0.07 -0.45 9.83 -39.27 -0.39 -0.83 16 13 C -0.17 -1.03 10.11 -39.44 -0.40 -1.43 16 14 C 0.09 0.68 11.18 -17.54 -0.20 0.48 16 15 N -0.48 -4.66 10.36 -13.25 -0.14 -4.79 16 16 C 0.11 0.90 9.48 -17.55 -0.17 0.74 16 17 C 0.12 1.24 6.32 -2.54 -0.02 1.22 16 18 C 0.04 0.78 10.45 -16.98 -0.18 0.61 16 19 N -0.30 -6.38 12.50 30.86 0.39 -6.00 16 20 N -0.31 -7.11 3.56 -57.78 -0.21 -7.31 16 21 C 0.25 6.23 5.78 -5.20 -0.03 6.20 16 22 C -0.54 -14.53 9.39 -34.44 -0.32 -14.85 16 23 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 26 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 32 H 0.09 1.72 6.50 -51.93 -0.34 1.39 16 33 H 0.08 0.72 7.02 -51.93 -0.36 0.35 16 34 H 0.08 0.68 6.81 -51.93 -0.35 0.33 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.50 6.80 -51.93 -0.35 0.15 16 37 H 0.14 0.60 8.04 -52.49 -0.42 0.17 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.16 1.19 7.03 -52.49 -0.37 0.82 16 41 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.07 0.69 7.08 -51.93 -0.37 0.32 16 43 H 0.19 2.38 4.47 -52.48 -0.23 2.15 16 44 H 0.06 1.39 7.64 -51.93 -0.40 0.99 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -32.74 378.70 -8.87 -41.61 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.09 Total: 1.28 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.75 Total: -3.28 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.21 Total: -50.39 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.74 -8.87 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892225200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.218 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds