Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38047 * 126.29461 * 2 1 4 4 C 1.47427 * 126.41065 * 0.02562 * 3 2 1 5 5 O 1.21605 * 120.00383 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99755 * 179.71238 * 4 3 2 7 7 C 1.47019 * 125.64691 * 359.69191 * 6 4 3 8 8 C 1.54337 * 107.26147 * 178.85174 * 7 6 4 9 9 C 1.55150 * 103.02027 * 338.13566 * 8 7 6 10 10 H 1.09004 * 111.03943 * 277.21557 * 9 8 7 11 11 C 1.50706 * 111.00055 * 153.38430 * 9 8 7 12 12 C 1.38677 * 120.41564 * 126.35202 * 11 9 8 13 13 C 1.38629 * 118.41888 * 179.97438 * 12 11 9 14 14 C 1.38232 * 119.15912 * 0.02562 * 13 12 11 15 15 N 1.31854 * 120.76629 * 0.02562 * 14 13 12 16 16 C 1.31883 * 121.72330 * 359.69688 * 15 14 13 17 17 C 1.47426 * 125.64612 * 179.97438 * 6 4 3 18 18 C 1.41293 * 107.17071 * 179.73617 * 3 2 1 19 19 N 1.30439 * 108.02392 * 0.24412 * 18 3 2 20 20 N 1.34269 * 126.29315 * 180.15363 * 2 1 3 21 21 C 1.46496 * 125.75074 * 0.02562 * 20 2 1 22 22 C 1.50701 * 109.47010 * 270.26997 * 21 20 2 23 23 H 1.08004 * 120.00208 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00209 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99792 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00252 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47029 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47134 * 119.99781 * 26 24 22 29 29 H 1.48498 * 109.47083 * 239.99516 * 26 24 22 30 30 H 1.09004 * 109.47401 * 89.99750 * 1 2 3 31 31 H 1.09000 * 109.47540 * 209.99869 * 1 2 3 32 32 H 1.09001 * 109.47330 * 330.00068 * 1 2 3 33 33 H 1.09000 * 109.88145 * 298.39274 * 7 6 4 34 34 H 1.08997 * 109.88249 * 59.56115 * 7 6 4 35 35 H 1.09007 * 110.84502 * 219.66866 * 8 7 6 36 36 H 1.09002 * 110.51530 * 96.45144 * 8 7 6 37 37 H 1.07997 * 120.79052 * 0.02562 * 12 11 9 38 38 H 1.07998 * 120.42391 * 180.02562 * 13 12 11 39 39 H 1.08005 * 119.61194 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.61805 * 180.31466 * 16 15 14 41 41 H 1.09000 * 110.36316 * 322.92768 * 17 6 4 42 42 H 1.08994 * 110.36888 * 85.14317 * 17 6 4 43 43 H 1.08007 * 125.98357 * 180.26004 * 18 3 2 44 44 H 1.08995 * 109.47441 * 30.26659 * 21 20 2 45 45 H 1.08997 * 109.47437 * 150.27231 * 21 20 2 46 46 H 0.97007 * 120.00137 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.8000 3.5107 0.0063 7 6 4.2589 3.3299 0.0189 8 6 4.8948 4.7360 -0.0080 9 6 3.7639 5.6199 -0.5970 10 1 3.7511 5.5650 -1.6856 11 6 3.8968 7.0474 -0.1326 12 6 3.9334 8.0845 -1.0526 13 6 4.0561 9.3818 -0.5798 14 6 4.1378 9.5970 0.7832 15 7 4.1008 8.5862 1.6291 16 6 3.9794 7.3399 1.2153 17 6 2.5024 4.9546 0.0070 18 6 3.6590 0.6497 0.0062 19 7 3.6340 -0.6544 0.0044 20 7 2.3017 -1.0822 -0.0029 21 6 1.8500 -2.4758 -0.0072 22 6 1.6883 -2.9558 1.4122 23 1 1.9003 -2.2892 2.2351 24 6 1.2697 -4.2458 1.6602 25 7 1.0111 -5.0573 0.6582 26 14 1.0699 -4.8410 3.4196 27 1 1.4219 -3.7438 4.3563 28 1 -0.3389 -5.2528 3.6459 29 1 1.9682 -5.9997 3.6551 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 4.5593 2.8024 0.9242 34 1 4.5704 2.7674 -0.8612 35 1 5.7730 4.7523 -0.6536 36 1 5.1507 5.0588 1.0012 37 1 3.8671 7.8861 -2.1121 38 1 4.0874 10.2139 -1.2676 39 1 4.2331 10.6049 1.1596 40 1 3.9476 6.5382 1.9383 41 1 1.6302 5.1624 -0.6129 42 1 2.3362 5.3072 1.0249 43 1 4.5449 1.2676 0.0118 44 1 0.8939 -2.5463 -0.5257 45 1 2.5871 -3.0951 -0.5183 46 1 0.7162 -5.9649 0.8326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892225200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 55.709117 kcal Electronic energy + Delta-G solvation = -28423.645923 eV Core-core repulsion = 24506.867969 eV Total energy + Delta-G solvation = -3916.777954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40352 -41.40356 -40.32143 -38.34838 -35.85100 -34.58753 -33.75524 -32.97307 -32.69957 -31.12283 -30.07813 -28.75606 -28.15203 -25.67328 -25.10523 -24.61546 -23.88500 -22.37948 -21.62719 -21.13453 -19.83853 -18.87789 -18.24718 -18.16118 -17.45067 -16.96200 -16.84937 -16.47666 -16.35608 -16.07393 -15.57417 -15.05986 -15.03605 -14.79555 -14.43324 -14.43102 -14.33688 -14.11693 -13.89952 -13.80555 -13.65473 -13.59300 -13.45900 -13.13852 -12.96859 -12.78523 -12.71613 -12.47176 -12.34162 -12.01054 -11.85154 -11.73723 -11.68161 -10.83674 -10.77395 -10.67347 -10.32871 -10.27580 -9.84011 -9.76440 -9.38349 -8.39107 -6.55388 0.18079 0.40109 0.64833 1.30909 1.35341 1.37936 1.48864 1.64482 2.06999 2.31571 2.48486 2.85694 2.92924 3.43691 3.55936 3.63413 3.72970 3.78265 3.86494 4.06136 4.09152 4.09564 4.18336 4.21311 4.27582 4.32749 4.42474 4.50430 4.63634 4.67362 4.69650 4.77665 4.83784 4.88873 4.90945 4.95210 5.05191 5.07415 5.13856 5.17964 5.26567 5.41600 5.43550 5.48352 5.67185 5.73721 5.82875 6.03160 6.51002 6.53907 6.81705 7.08229 7.15767 7.25152 8.68930 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002065 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.054801 B =13554.506606 C =13636.532876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.616 3.384 5 O -0.585 6.585 6 N -0.615 5.615 7 C 0.084 3.916 8 C -0.114 4.114 9 C -0.045 4.045 10 H 0.110 0.890 11 C -0.123 4.123 12 C -0.072 4.072 13 C -0.167 4.167 14 C 0.078 3.922 15 N -0.516 5.516 16 C 0.089 3.911 17 C 0.115 3.885 18 C 0.068 3.932 19 N -0.335 5.335 20 N -0.337 5.337 21 C 0.267 3.733 22 C -0.555 4.555 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.230 0.770 44 H 0.050 0.950 45 H 0.033 0.967 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.549 27.527 -4.977 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.343 4.343 4 C 0.408 3.592 5 O -0.467 6.467 6 N -0.348 5.348 7 C -0.038 4.038 8 C -0.152 4.152 9 C -0.064 4.064 10 H 0.129 0.871 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.187 4.187 14 C -0.078 4.078 15 N -0.225 5.225 16 C -0.067 4.067 17 C -0.007 4.007 18 C -0.118 4.118 19 N -0.155 5.155 20 N -0.114 5.114 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.554 5.554 26 Si 0.796 3.204 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.198 1.198 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.172 0.828 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.246 0.754 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.574 26.330 -4.134 27.997 hybrid contribution -0.814 -0.360 0.005 0.890 sum 7.760 25.970 -4.129 27.417 Atomic orbital electron populations 1.20573 0.85909 1.04186 1.04073 1.21944 0.95932 0.86694 0.94467 1.19861 0.93425 0.92718 1.28316 1.16817 0.84183 0.83377 0.74856 1.90680 1.17630 1.84484 1.53944 1.48097 1.07312 1.05741 1.73607 1.22638 0.78608 0.99521 1.03055 1.22826 0.97857 0.91236 1.03272 1.21173 0.94115 0.89544 1.01613 0.87135 1.20579 1.01760 0.95646 0.94541 1.21884 0.94673 0.92034 1.01212 1.22475 1.00473 0.98569 0.97147 1.23230 0.95177 0.98741 0.90635 1.67701 1.12990 1.00762 1.41076 1.22767 0.95629 0.93815 0.94505 1.22309 0.98391 0.78966 1.01002 1.25088 0.97994 0.91566 0.97198 1.77099 0.98321 1.14420 1.25628 1.49134 1.03406 1.07719 1.51124 1.19379 0.95328 0.72320 0.98152 1.21415 1.47902 0.98448 0.91549 0.93118 1.25727 0.93853 0.95955 1.02241 1.70001 1.44858 1.07636 1.32863 0.85299 0.78467 0.78182 0.78500 1.19810 1.19348 1.19768 0.89007 0.91071 0.88494 0.90122 0.89456 0.86970 0.89592 0.82414 0.81975 0.81057 0.82820 0.91429 0.91604 0.75387 0.93176 0.94873 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.37 9.34 71.23 0.67 -2.70 16 2 C 0.15 6.12 7.01 42.14 0.30 6.41 16 3 C -0.33 -12.06 6.09 -20.15 -0.12 -12.19 16 4 C 0.62 20.68 7.85 86.66 0.68 21.36 16 5 O -0.59 -22.97 15.10 -4.05 -0.06 -23.03 16 6 N -0.61 -14.64 3.33 -815.68 -2.71 -17.35 16 7 C 0.08 1.31 4.98 86.73 0.43 1.74 16 8 C -0.11 -1.12 6.35 31.79 0.20 -0.91 16 9 C -0.04 -0.52 3.28 -10.16 -0.03 -0.56 16 10 H 0.11 1.04 8.01 -2.39 -0.02 1.02 16 11 C -0.12 -1.52 5.01 -19.77 -0.10 -1.62 16 12 C -0.07 -0.70 9.83 22.47 0.22 -0.48 16 13 C -0.17 -1.52 10.11 22.36 0.23 -1.30 16 14 C 0.08 1.01 11.18 84.69 0.95 1.96 16 15 N -0.52 -9.46 10.36 -195.84 -2.03 -11.49 16 16 C 0.09 1.42 9.48 84.67 0.80 2.22 16 17 C 0.12 2.22 6.32 86.85 0.55 2.77 16 18 C 0.07 2.29 10.45 85.65 0.89 3.18 16 19 N -0.34 -14.49 12.50 -56.27 -0.70 -15.19 16 20 N -0.34 -15.72 3.56 -336.72 -1.20 -16.92 16 21 C 0.27 13.85 5.78 85.63 0.49 14.35 16 22 C -0.56 -30.76 9.39 25.60 0.24 -30.52 16 23 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 24 C 0.02 1.28 5.46 84.65 0.46 1.75 16 25 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 26 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.07 2.81 7.71 -2.39 -0.02 2.79 16 32 H 0.10 3.60 6.50 -2.39 -0.02 3.58 16 33 H 0.08 1.25 7.02 -2.39 -0.02 1.24 16 34 H 0.09 1.22 6.81 -2.39 -0.02 1.21 16 35 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.09 0.80 6.80 -2.39 -0.02 0.79 16 37 H 0.16 0.75 8.04 -2.91 -0.02 0.73 16 38 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.15 2.26 7.03 -2.91 -0.02 2.24 16 41 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 42 H 0.07 1.30 7.08 -2.39 -0.02 1.29 16 43 H 0.23 5.25 4.47 -2.91 -0.01 5.23 16 44 H 0.05 2.61 7.64 -2.39 -0.02 2.59 16 45 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -73.03 378.70 3.47 -69.56 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.01 Total: 14.99 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.86 Total: 5.47 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -6.36 Total: -111.92 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.03 3.47 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892225200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.266 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds