Wall clock time and date at job start Sat Apr 11 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31749 * 119.04781 * 2 1 4 4 C 1.33170 * 120.88095 * 179.97438 * 3 2 1 5 5 N 1.38734 * 120.48260 * 179.97438 * 4 3 2 6 6 C 1.39785 * 120.00069 * 5.83885 * 5 4 3 7 7 C 1.38902 * 120.07301 * 32.49584 * 6 5 4 8 8 C 1.38113 * 119.92357 * 179.72614 * 7 6 5 9 9 C 1.38281 * 120.07077 * 0.56824 * 8 7 6 10 10 C 1.38288 * 120.15158 * 359.68536 * 9 8 7 11 11 C 1.38095 * 120.07329 * 0.04028 * 10 9 8 12 12 C 1.39164 * 119.03170 * 0.02562 * 4 3 2 13 13 C 1.39140 * 118.26844 * 359.97438 * 12 4 3 14 14 N 1.38636 * 120.48945 * 180.02562 * 13 12 4 15 15 C 1.48724 * 111.01315 * 64.48787 * 14 13 12 16 16 C 1.54378 * 104.51413 * 158.96911 * 15 14 13 17 17 C 1.54263 * 105.15039 * 336.26662 * 16 15 14 18 18 O 1.42900 * 110.32482 * 241.05361 * 17 16 15 19 19 C 1.50700 * 110.32131 * 118.94795 * 17 16 15 20 20 H 1.07996 * 120.00166 * 241.45849 * 19 17 16 21 21 C 1.37878 * 120.00034 * 61.45481 * 19 17 16 22 22 N 1.31514 * 119.99806 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99968 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47401 * 59.99870 * 23 21 19 25 25 H 1.48502 * 109.46920 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47166 * 299.99548 * 23 21 19 27 27 C 1.48552 * 111.00185 * 179.97438 * 14 13 12 28 28 N 1.31742 * 119.04009 * 180.25398 * 2 1 3 29 29 H 1.09000 * 109.47269 * 90.00127 * 1 2 3 30 30 H 1.09002 * 109.47551 * 209.99976 * 1 2 3 31 31 H 1.08995 * 109.47316 * 329.99985 * 1 2 3 32 32 H 0.97005 * 119.99807 * 185.83821 * 5 4 3 33 33 H 1.07999 * 120.04028 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.96221 * 180.29531 * 8 7 6 35 35 H 1.08002 * 119.92508 * 179.70772 * 9 8 7 36 36 H 1.08002 * 119.96507 * 180.02562 * 10 9 8 37 37 H 1.08005 * 120.03939 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.86814 * 179.97438 * 12 4 3 39 39 H 1.08999 * 110.39103 * 40.24356 * 15 14 13 40 40 H 1.09002 * 110.50809 * 277.75494 * 15 14 13 41 41 H 1.08999 * 110.32166 * 217.32065 * 16 15 14 42 42 H 1.09003 * 110.32285 * 95.21692 * 16 15 14 43 43 H 0.96701 * 113.99606 * 298.54783 * 18 17 16 44 44 H 0.97004 * 120.00022 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.40947 * 82.17911 * 27 14 13 46 46 H 1.09000 * 110.41724 * 319.74205 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1466 1.1518 0.0000 4 6 3.4776 1.1944 0.0005 5 7 4.1428 2.4119 0.0000 6 6 3.4210 3.6027 0.1220 7 6 2.2555 3.6359 0.8769 8 6 1.5478 4.8155 1.0000 9 6 1.9921 5.9598 0.3633 10 6 3.1492 5.9289 -0.3933 11 6 3.8647 4.7541 -0.5159 12 6 4.1916 -0.0002 0.0005 13 6 3.4777 -1.1945 0.0005 14 7 4.1423 -2.4112 0.0010 15 6 4.9223 -2.5923 1.2543 16 6 5.1356 -4.1176 1.3603 17 6 3.9914 -4.7429 0.5360 18 8 3.1712 -5.5647 1.3690 19 6 4.5505 -5.5508 -0.6067 20 1 4.3177 -5.2783 -1.6255 21 6 5.3595 -6.6378 -0.3516 22 7 5.6435 -6.9693 0.8890 23 14 6.0531 -7.6388 -1.7681 24 1 6.8886 -6.7643 -2.6298 25 1 6.8858 -8.7451 -1.2313 26 1 4.9370 -8.2024 -2.5692 27 6 3.1804 -3.5433 0.0016 28 7 2.1464 -1.1518 -0.0051 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.1088 2.4367 -0.0851 33 1 1.9052 2.7413 1.3702 34 1 0.6441 4.8432 1.5907 35 1 1.4343 6.8798 0.4574 36 1 3.4937 6.8245 -0.8889 37 1 4.7686 4.7307 -1.1066 38 1 5.2716 -0.0003 0.0005 39 1 4.3552 -2.2273 2.1107 40 1 5.8809 -2.0782 1.1852 41 1 5.0715 -4.4374 2.4003 42 1 6.1016 -4.3950 0.9384 43 1 3.6395 -6.3099 1.7696 44 1 6.2129 -7.7339 1.0685 45 1 2.8283 -3.7434 -1.0105 46 1 2.3401 -3.3280 0.6616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894350735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:23 Heat of formation + Delta-G solvation = 53.245014 kcal Electronic energy + Delta-G solvation = -28986.485902 eV Core-core repulsion = 25069.601096 eV Total energy + Delta-G solvation = -3916.884805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16100 -39.55705 -38.42667 -36.26437 -35.22038 -32.46433 -32.25346 -32.12214 -30.99111 -29.44249 -29.00540 -28.53471 -27.49908 -24.89838 -23.50980 -23.01086 -22.19556 -21.73217 -20.51939 -19.58413 -18.14681 -17.54051 -17.07019 -16.71677 -16.30483 -15.51978 -15.39526 -15.16666 -14.86962 -14.74709 -14.37894 -14.08448 -13.86107 -13.62786 -13.47174 -13.32440 -13.16676 -12.60370 -12.39736 -12.34737 -12.22921 -11.80323 -11.68087 -11.59410 -11.28996 -11.24968 -11.06113 -10.77345 -10.58906 -10.53690 -10.41170 -10.09193 -9.87635 -9.33041 -9.19751 -9.08473 -8.88304 -8.59610 -8.20415 -8.14426 -7.77918 -6.20219 -4.26212 1.00327 1.23613 1.28835 1.69430 2.77584 3.26407 3.30490 3.34660 3.66334 3.84457 4.08645 4.15239 4.32885 4.59129 4.74686 4.81809 5.02195 5.07645 5.11184 5.26422 5.36422 5.42717 5.47426 5.51319 5.56772 5.61147 5.67989 5.76776 5.81092 5.90966 5.96040 6.04114 6.18135 6.22935 6.25773 6.31737 6.42676 6.60591 6.67533 6.76758 6.78265 6.98374 7.02369 7.11895 7.33912 7.46966 7.59394 7.65616 7.80967 8.16362 8.46483 8.76337 9.38628 9.48172 10.87172 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002415 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.973717 B =11589.391406 C =12057.562743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.372 3.628 3 N -0.584 5.584 4 C 0.436 3.564 5 N -0.657 5.657 6 C 0.168 3.832 7 C -0.116 4.116 8 C -0.101 4.101 9 C -0.146 4.146 10 C -0.101 4.101 11 C -0.157 4.157 12 C -0.300 4.300 13 C 0.388 3.612 14 N -0.446 5.446 15 C 0.048 3.952 16 C -0.123 4.123 17 C 0.247 3.753 18 O -0.590 6.590 19 C -0.521 4.521 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.066 3.934 28 N -0.575 5.575 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.419 0.581 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.383 0.617 44 H 0.267 0.733 45 H 0.081 0.919 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 21.816 1.265 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 N -0.310 5.310 4 C 0.197 3.803 5 N -0.282 5.282 6 C 0.073 3.927 7 C -0.137 4.137 8 C -0.119 4.119 9 C -0.166 4.166 10 C -0.120 4.120 11 C -0.179 4.179 12 C -0.330 4.330 13 C 0.150 3.850 14 N -0.163 5.163 15 C -0.077 4.077 16 C -0.162 4.162 17 C 0.207 3.793 18 O -0.399 6.399 19 C -0.560 4.560 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.540 5.540 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.061 4.061 28 N -0.300 5.300 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.257 0.743 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.233 0.767 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.104 22.037 0.735 22.633 hybrid contribution 2.024 -0.901 -0.284 2.234 sum -3.080 21.137 0.451 21.365 Atomic orbital electron populations 1.20532 0.85943 1.03844 1.03737 1.22803 0.97431 0.82202 0.87386 1.67913 1.07077 1.30627 1.25420 1.18152 0.88751 0.85133 0.88304 1.41894 1.08807 1.01154 1.76385 1.17719 0.93937 0.85193 0.95887 1.21201 0.95252 0.98723 0.98525 1.21025 0.99441 0.92284 0.99188 1.21069 0.97360 0.98442 0.99688 1.20863 0.95169 0.97155 0.98778 1.20845 1.02378 0.92849 1.01783 1.21413 1.01845 0.90845 1.18876 1.20202 0.87638 0.91466 0.85723 1.62201 1.20795 0.99579 1.33699 1.23264 0.96667 1.00634 0.87126 1.22957 1.03255 0.89576 1.00374 1.19288 0.85074 0.86950 0.87985 1.86107 1.42168 1.44514 1.67116 1.21600 1.29311 1.11956 0.93099 0.91985 1.25003 0.95404 0.97049 0.96003 1.69678 1.38082 1.27988 1.18276 0.86520 0.78984 0.79468 0.82244 1.20169 1.21256 1.20107 1.22932 0.93055 0.87922 1.02147 1.68390 1.08922 1.30036 1.22603 0.89749 0.89503 0.90000 0.74301 0.84546 0.86012 0.86349 0.86060 0.86095 0.84060 0.93969 0.90530 0.92190 0.90056 0.76663 0.92323 0.90013 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.31 36.00 0.37 -0.57 16 2 C 0.37 5.76 7.64 -157.28 -1.20 4.56 16 3 N -0.58 -8.71 7.12 -10.01 -0.07 -8.78 16 4 C 0.44 6.22 7.22 -154.61 -1.12 5.11 16 5 N -0.66 -7.43 5.48 -9.89 -0.05 -7.49 16 6 C 0.17 1.91 6.32 -83.74 -0.53 1.38 16 7 C -0.12 -1.35 8.60 -39.38 -0.34 -1.69 16 8 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 9 C -0.15 -1.27 10.04 -39.55 -0.40 -1.67 16 10 C -0.10 -0.87 10.04 -39.62 -0.40 -1.27 16 11 C -0.16 -1.51 9.96 -39.38 -0.39 -1.90 16 12 C -0.30 -4.61 9.49 -38.90 -0.37 -4.97 16 13 C 0.39 7.08 6.16 -154.69 -0.95 6.13 16 14 N -0.45 -8.97 5.40 -168.56 -0.91 -9.88 16 15 C 0.05 0.91 6.08 -2.09 -0.01 0.90 16 16 C -0.12 -2.74 5.54 -25.35 -0.14 -2.89 16 17 C 0.25 6.09 1.05 -90.40 -0.10 5.99 16 18 O -0.59 -15.20 12.94 -35.23 -0.46 -15.66 16 19 C -0.52 -13.91 8.10 -34.44 -0.28 -14.19 16 20 H 0.06 1.68 7.54 -52.49 -0.40 1.29 16 21 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 22 N -0.90 -23.61 10.81 55.43 0.60 -23.01 16 23 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.07 1.48 5.21 -2.20 -0.01 1.46 16 28 N -0.58 -10.41 8.47 -10.03 -0.08 -10.49 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.42 3.61 8.83 -40.82 -0.36 3.25 16 33 H 0.14 1.75 6.23 -52.49 -0.33 1.42 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.04 0.77 7.97 -51.93 -0.41 0.36 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.34 7.98 -51.93 -0.41 0.92 16 42 H 0.08 1.96 7.24 -51.93 -0.38 1.59 16 43 H 0.38 9.89 7.32 45.56 0.33 10.22 16 44 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.08 1.91 7.68 -51.93 -0.40 1.51 16 46 H 0.06 1.45 7.11 -51.93 -0.37 1.08 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -29.52 376.99 -12.33 -41.85 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.66 Total: 15.41 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -6.35 Total: -3.33 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.52 Total: -59.64 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.52 -12.33 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.093 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds