Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31749 * 119.04781 * 2 1 4 4 C 1.33170 * 120.88095 * 179.97438 * 3 2 1 5 5 N 1.38734 * 120.48260 * 179.97438 * 4 3 2 6 6 C 1.39785 * 120.00069 * 5.83885 * 5 4 3 7 7 C 1.38902 * 120.07301 * 32.49584 * 6 5 4 8 8 C 1.38113 * 119.92357 * 179.72614 * 7 6 5 9 9 C 1.38281 * 120.07077 * 0.56824 * 8 7 6 10 10 C 1.38288 * 120.15158 * 359.68536 * 9 8 7 11 11 C 1.38095 * 120.07329 * 0.04028 * 10 9 8 12 12 C 1.39164 * 119.03170 * 0.02562 * 4 3 2 13 13 C 1.39140 * 118.26844 * 359.97438 * 12 4 3 14 14 N 1.38636 * 120.48945 * 180.02562 * 13 12 4 15 15 C 1.48724 * 111.01315 * 64.48787 * 14 13 12 16 16 C 1.54378 * 104.51413 * 158.96911 * 15 14 13 17 17 C 1.54263 * 105.15039 * 336.26662 * 16 15 14 18 18 O 1.42900 * 110.32482 * 241.05361 * 17 16 15 19 19 C 1.50700 * 110.32131 * 118.94795 * 17 16 15 20 20 H 1.07996 * 120.00166 * 241.45849 * 19 17 16 21 21 C 1.37878 * 120.00034 * 61.45481 * 19 17 16 22 22 N 1.31514 * 119.99806 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99968 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47401 * 59.99870 * 23 21 19 25 25 H 1.48502 * 109.46920 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47166 * 299.99548 * 23 21 19 27 27 C 1.48552 * 111.00185 * 179.97438 * 14 13 12 28 28 N 1.31742 * 119.04009 * 180.25398 * 2 1 3 29 29 H 1.09000 * 109.47269 * 90.00127 * 1 2 3 30 30 H 1.09002 * 109.47551 * 209.99976 * 1 2 3 31 31 H 1.08995 * 109.47316 * 329.99985 * 1 2 3 32 32 H 0.97005 * 119.99807 * 185.83821 * 5 4 3 33 33 H 1.07999 * 120.04028 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.96221 * 180.29531 * 8 7 6 35 35 H 1.08002 * 119.92508 * 179.70772 * 9 8 7 36 36 H 1.08002 * 119.96507 * 180.02562 * 10 9 8 37 37 H 1.08005 * 120.03939 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.86814 * 179.97438 * 12 4 3 39 39 H 1.08999 * 110.39103 * 40.24356 * 15 14 13 40 40 H 1.09002 * 110.50809 * 277.75494 * 15 14 13 41 41 H 1.08999 * 110.32166 * 217.32065 * 16 15 14 42 42 H 1.09003 * 110.32285 * 95.21692 * 16 15 14 43 43 H 0.96701 * 113.99606 * 298.54783 * 18 17 16 44 44 H 0.97004 * 120.00022 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.40947 * 82.17911 * 27 14 13 46 46 H 1.09000 * 110.41724 * 319.74205 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1466 1.1518 0.0000 4 6 3.4776 1.1944 0.0005 5 7 4.1428 2.4119 0.0000 6 6 3.4210 3.6027 0.1220 7 6 2.2555 3.6359 0.8769 8 6 1.5478 4.8155 1.0000 9 6 1.9921 5.9598 0.3633 10 6 3.1492 5.9289 -0.3933 11 6 3.8647 4.7541 -0.5159 12 6 4.1916 -0.0002 0.0005 13 6 3.4777 -1.1945 0.0005 14 7 4.1423 -2.4112 0.0010 15 6 4.9223 -2.5923 1.2543 16 6 5.1356 -4.1176 1.3603 17 6 3.9914 -4.7429 0.5360 18 8 3.1712 -5.5647 1.3690 19 6 4.5505 -5.5508 -0.6067 20 1 4.3177 -5.2783 -1.6255 21 6 5.3595 -6.6378 -0.3516 22 7 5.6435 -6.9693 0.8890 23 14 6.0531 -7.6388 -1.7681 24 1 6.8886 -6.7643 -2.6298 25 1 6.8858 -8.7451 -1.2313 26 1 4.9370 -8.2024 -2.5692 27 6 3.1804 -3.5433 0.0016 28 7 2.1464 -1.1518 -0.0051 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 5.1088 2.4367 -0.0851 33 1 1.9052 2.7413 1.3702 34 1 0.6441 4.8432 1.5907 35 1 1.4343 6.8798 0.4574 36 1 3.4937 6.8245 -0.8889 37 1 4.7686 4.7307 -1.1066 38 1 5.2716 -0.0003 0.0005 39 1 4.3552 -2.2273 2.1107 40 1 5.8809 -2.0782 1.1852 41 1 5.0715 -4.4374 2.4003 42 1 6.1016 -4.3950 0.9384 43 1 3.6395 -6.3099 1.7696 44 1 6.2129 -7.7339 1.0685 45 1 2.8283 -3.7434 -1.0105 46 1 2.3401 -3.3280 0.6616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894350735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = 35.992047 kcal Electronic energy + Delta-G solvation = -28987.234047 eV Core-core repulsion = 25069.601096 eV Total energy + Delta-G solvation = -3917.632950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.36388 -40.57139 -39.83473 -37.37874 -36.81711 -34.18607 -33.86809 -33.27080 -31.72947 -30.70959 -30.22124 -30.05655 -28.83323 -26.71521 -24.61178 -24.18099 -23.17808 -22.72876 -21.90760 -21.36903 -19.16666 -19.09677 -18.71763 -17.77676 -17.28449 -16.89991 -16.67106 -16.63209 -16.27620 -16.05830 -15.71540 -15.51035 -14.93281 -14.69784 -14.69072 -14.26818 -14.25587 -14.10254 -13.98052 -13.56352 -13.45998 -13.24871 -13.13447 -13.03782 -12.66573 -12.47127 -12.42034 -12.39493 -12.24690 -12.03724 -11.93479 -11.68077 -11.18498 -11.00860 -10.61240 -10.36968 -10.23044 -10.17420 -9.75806 -9.57409 -8.69843 -8.20630 -6.33673 -0.02653 0.05078 0.55960 0.73963 1.42352 1.43193 1.50951 1.82479 2.40284 2.48171 2.78508 3.00784 3.03090 3.09906 3.37501 3.81234 3.94751 4.03268 4.08038 4.15898 4.18339 4.21678 4.33659 4.39225 4.46265 4.54902 4.57924 4.62137 4.70210 4.72995 4.73743 4.87787 4.95357 4.97759 5.07940 5.18032 5.19714 5.31684 5.44313 5.49305 5.56586 5.61418 5.71122 5.75794 5.86458 5.98100 6.08067 6.19047 6.23817 6.61413 6.69654 7.27467 7.34412 7.43570 8.85113 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002415 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.973717 B =11589.391406 C =12057.562743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.362 3.638 3 N -0.582 5.582 4 C 0.437 3.563 5 N -0.643 5.643 6 C 0.143 3.857 7 C -0.135 4.135 8 C -0.108 4.108 9 C -0.144 4.144 10 C -0.103 4.103 11 C -0.158 4.158 12 C -0.297 4.297 13 C 0.362 3.638 14 N -0.452 5.452 15 C 0.058 3.942 16 C -0.112 4.112 17 C 0.232 3.768 18 O -0.599 6.599 19 C -0.545 4.545 20 H 0.048 0.952 21 C 0.030 3.970 22 N -0.911 5.911 23 Si 0.957 3.043 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.081 3.919 28 N -0.605 5.605 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.431 0.569 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.048 0.952 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.379 0.621 44 H 0.270 0.730 45 H 0.063 0.937 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 24.710 0.770 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.092 3.908 3 N -0.308 5.308 4 C 0.196 3.804 5 N -0.269 5.269 6 C 0.048 3.952 7 C -0.156 4.156 8 C -0.126 4.126 9 C -0.163 4.163 10 C -0.121 4.121 11 C -0.179 4.179 12 C -0.326 4.326 13 C 0.125 3.875 14 N -0.170 5.170 15 C -0.067 4.067 16 C -0.151 4.151 17 C 0.192 3.808 18 O -0.408 6.408 19 C -0.583 4.583 20 H 0.066 0.934 21 C -0.170 4.170 22 N -0.551 5.551 23 Si 0.783 3.217 24 H -0.200 1.200 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.046 4.046 28 N -0.330 5.330 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.272 0.728 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.178 0.822 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.656 24.985 0.245 25.417 hybrid contribution 1.819 -1.594 -0.109 2.421 sum -2.836 23.391 0.136 23.563 Atomic orbital electron populations 1.20636 0.83543 1.04752 1.04706 1.23480 0.98921 0.81716 0.86678 1.68056 1.07444 1.30122 1.25209 1.18328 0.88702 0.85962 0.87438 1.41874 1.09418 1.00333 1.75306 1.17935 0.94480 0.85563 0.97222 1.21192 0.96057 0.98947 0.99404 1.21260 0.99871 0.92052 0.99454 1.21433 0.97371 0.98950 0.98574 1.21259 0.94816 0.97748 0.98311 1.21108 1.02994 0.92430 1.01326 1.21501 1.02703 0.90117 1.18327 1.20261 0.88234 0.91362 0.87601 1.62234 1.20563 0.99665 1.34562 1.23201 0.98058 0.98205 0.87258 1.22695 1.01124 0.92065 0.99240 1.19510 0.86090 0.87296 0.87887 1.86099 1.42759 1.44616 1.67305 1.21749 1.30362 1.13186 0.93044 0.93414 1.25617 0.95481 0.97705 0.98184 1.69746 1.37940 1.28089 1.19300 0.85637 0.78228 0.78222 0.79644 1.19958 1.20357 1.20308 1.22583 0.93124 0.88380 1.00495 1.68351 1.09186 1.31560 1.23886 0.88594 0.89519 0.88090 0.72842 0.86351 0.84530 0.83847 0.83375 0.84316 0.82164 0.93388 0.87667 0.92747 0.92110 0.77135 0.92089 0.91896 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.31 71.23 0.73 -1.01 16 2 C 0.36 11.13 7.64 138.78 1.06 12.19 16 3 N -0.58 -16.95 7.12 -185.57 -1.32 -18.28 16 4 C 0.44 12.02 7.22 132.93 0.96 12.98 16 5 N -0.64 -13.47 5.48 -185.19 -1.01 -14.49 16 6 C 0.14 2.99 6.32 38.19 0.24 3.23 16 7 C -0.14 -2.97 8.60 22.40 0.19 -2.77 16 8 C -0.11 -1.86 10.04 22.25 0.22 -1.64 16 9 C -0.14 -2.04 10.04 22.29 0.22 -1.82 16 10 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 11 C -0.16 -2.58 9.96 22.40 0.22 -2.36 16 12 C -0.30 -8.84 9.49 22.71 0.22 -8.62 16 13 C 0.36 13.27 6.16 132.95 0.82 14.09 16 14 N -0.45 -18.43 5.40 -687.19 -3.71 -22.15 16 15 C 0.06 2.17 6.08 86.42 0.53 2.69 16 16 C -0.11 -5.12 5.54 31.49 0.17 -4.95 16 17 C 0.23 11.78 1.05 -10.65 -0.01 11.77 16 18 O -0.60 -31.93 12.94 -148.98 -1.93 -33.86 16 19 C -0.55 -29.91 8.10 25.60 0.21 -29.70 16 20 H 0.05 2.68 7.54 -2.91 -0.02 2.66 16 21 C 0.03 1.61 5.02 84.66 0.43 2.04 16 22 N -0.91 -48.30 10.81 21.45 0.23 -48.07 16 23 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.08 3.79 5.21 86.44 0.45 4.24 16 28 N -0.60 -22.20 8.47 -185.65 -1.57 -23.77 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.43 6.53 8.83 -92.70 -0.82 5.71 16 33 H 0.12 2.99 6.23 -2.91 -0.02 2.97 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.05 1.74 7.97 -2.39 -0.02 1.72 16 40 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.05 2.48 7.98 -2.39 -0.02 2.46 16 42 H 0.06 2.98 7.24 -2.39 -0.02 2.97 16 43 H 0.38 20.25 7.32 -74.06 -0.54 19.70 16 44 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 45 H 0.06 3.10 7.68 -2.38 -0.02 3.08 16 46 H 0.05 2.61 7.11 -2.39 -0.02 2.59 16 Total: -1.00 -64.73 376.99 -0.74 -65.46 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.34 Total: 41.18 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.89 Total: 9.17 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.39 Total: -126.75 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.93 Total: -33.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.73 -0.74 -65.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.456 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds