Wall clock time and date at job start Sat Apr 11 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38040 * 126.29445 * 2 1 4 4 C 1.47426 * 126.41398 * 0.02562 * 3 2 1 5 5 O 1.21602 * 120.00087 * 335.08252 * 4 3 2 6 6 N 1.34785 * 119.99850 * 155.07579 * 4 3 2 7 7 C 1.47417 * 125.64852 * 354.59704 * 6 4 3 8 8 C 1.54910 * 104.83126 * 204.08992 * 7 6 4 9 9 C 1.55403 * 101.66735 * 323.07564 * 8 7 6 10 10 C 1.47023 * 125.64539 * 174.55486 * 6 4 3 11 11 H 1.08997 * 109.88604 * 59.40504 * 10 6 4 12 12 C 1.50699 * 109.87975 * 298.39376 * 10 6 4 13 13 C 1.38652 * 120.78858 * 140.31988 * 12 10 6 14 14 C 1.38209 * 119.16286 * 180.02562 * 13 12 10 15 15 N 1.31868 * 120.76477 * 0.25956 * 14 13 12 16 16 C 1.31875 * 121.72184 * 359.46890 * 15 14 13 17 17 C 1.38203 * 120.76636 * 0.52885 * 16 15 14 18 18 C 1.41291 * 107.17266 * 179.76007 * 3 2 1 19 19 N 1.30447 * 108.02305 * 0.24220 * 18 3 2 20 20 N 1.34266 * 126.28747 * 180.17843 * 2 1 3 21 21 C 1.46493 * 125.75842 * 359.97438 * 20 2 1 22 22 C 1.50694 * 109.47162 * 270.26816 * 21 20 2 23 23 H 1.07998 * 120.00400 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99971 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00200 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99954 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47254 * 60.00250 * 26 24 22 28 28 H 1.48499 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47261 * 300.00215 * 26 24 22 30 30 H 1.08999 * 109.47019 * 89.99854 * 1 2 3 31 31 H 1.08996 * 109.47284 * 210.00147 * 1 2 3 32 32 H 1.08994 * 109.46849 * 330.00334 * 1 2 3 33 33 H 1.08998 * 110.36764 * 322.92734 * 7 6 4 34 34 H 1.08999 * 110.37074 * 85.25229 * 7 6 4 35 35 H 1.09001 * 111.00036 * 81.06865 * 8 7 6 36 36 H 1.08997 * 111.00272 * 204.87604 * 8 7 6 37 37 H 1.08999 * 110.69192 * 277.04913 * 9 8 7 38 38 H 1.09003 * 110.84957 * 153.69509 * 9 8 7 39 39 H 1.08000 * 120.42077 * 0.04085 * 13 12 10 40 40 H 1.07996 * 119.61462 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.61504 * 180.26853 * 16 15 14 42 42 H 1.07998 * 120.41728 * 179.76292 * 17 16 15 43 43 H 1.07995 * 125.99274 * 180.27560 * 18 3 2 44 44 H 1.09007 * 109.46903 * 30.26632 * 21 20 2 45 45 H 1.09001 * 109.47109 * 150.26018 * 21 20 2 46 46 H 0.97009 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.7931 2.8170 -0.4427 6 7 2.6965 3.4782 0.4924 7 6 3.9913 3.2491 1.1590 8 6 4.2058 4.4990 2.0487 9 6 3.6179 5.6259 1.1545 10 6 2.4362 4.9246 0.4522 11 1 1.5074 5.1489 0.9765 12 6 2.3419 5.3887 -0.9785 13 6 1.3971 6.3297 -1.3585 14 6 1.3398 6.7310 -2.6798 15 7 2.1665 6.2260 -3.5745 16 6 3.0807 5.3334 -3.2480 17 6 3.1973 4.8845 -1.9461 18 6 3.6591 0.6498 0.0057 19 7 3.6341 -0.6545 0.0036 20 7 2.3016 -1.0823 -0.0034 21 6 1.8501 -2.4758 -0.0072 22 6 1.6894 -2.9557 1.4123 23 1 1.9028 -2.2894 2.2350 24 6 1.2700 -4.2454 1.6607 25 7 1.0107 -5.0570 0.6589 26 14 1.0716 -4.8405 3.4202 27 1 0.0686 -3.9965 4.1181 28 1 0.6137 -6.2531 3.4163 29 1 2.3752 -4.7451 4.1251 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.9480 2.3495 1.7728 34 1 4.7890 3.1677 0.4207 35 1 3.6499 4.4139 2.9825 36 1 5.2658 4.6642 2.2412 37 1 4.3549 5.9630 0.4255 38 1 3.2657 6.4594 1.7623 39 1 0.7147 6.7440 -0.6312 40 1 0.6065 7.4632 -2.9839 41 1 3.7432 4.9456 -4.0077 42 1 3.9455 4.1506 -1.6857 43 1 4.5449 1.2674 0.0113 44 1 0.8935 -2.5464 -0.5250 45 1 2.5867 -3.0951 -0.5190 46 1 0.7159 -5.9646 0.8336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895574529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:26 Heat of formation + Delta-G solvation = 73.824286 kcal Electronic energy + Delta-G solvation = -29439.502862 eV Core-core repulsion = 25523.510441 eV Total energy + Delta-G solvation = -3915.992421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06370 -40.46149 -39.15290 -37.18110 -33.98122 -33.20191 -32.23778 -31.67500 -31.27392 -30.97030 -28.77009 -27.30027 -26.69570 -24.42031 -23.61080 -23.48689 -22.72355 -21.51993 -20.89744 -19.63022 -18.48907 -17.28394 -17.13188 -16.74635 -16.27306 -15.81469 -15.66022 -15.34399 -14.82669 -14.65916 -14.54334 -14.08858 -13.87950 -13.68970 -13.50840 -13.46523 -13.35933 -12.94736 -12.56756 -12.46683 -12.25656 -12.09808 -11.92509 -11.78714 -11.64192 -11.50995 -11.37231 -11.15967 -11.06647 -10.91171 -10.40443 -10.26613 -9.97877 -9.77856 -9.57471 -9.39159 -9.22237 -8.73512 -8.70497 -8.57913 -7.93374 -6.35932 -4.44406 1.06734 1.13667 2.17648 2.77271 2.96572 3.17251 3.21835 3.24027 3.39713 3.69943 3.75937 4.19403 4.21598 4.32036 4.37527 4.48141 4.70660 4.76887 4.96794 4.98762 5.04679 5.09755 5.12186 5.16080 5.23096 5.44485 5.48389 5.50993 5.55484 5.58396 5.63481 5.69149 5.71756 5.85030 5.90601 5.91459 6.06594 6.15990 6.35587 6.41081 6.57025 6.61086 6.76567 6.88281 7.14251 7.53008 7.63208 7.74687 7.76176 7.88487 8.34673 8.51501 8.61052 9.22622 10.72148 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002787 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.098665 B =10044.247701 C =10610.690058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.162 3.838 3 C -0.327 4.327 4 C 0.621 3.379 5 O -0.544 6.544 6 N -0.616 5.616 7 C 0.098 3.902 8 C -0.133 4.133 9 C -0.122 4.122 10 C 0.178 3.822 11 H 0.086 0.914 12 C -0.038 4.038 13 C -0.159 4.159 14 C 0.096 3.904 15 N -0.489 5.489 16 C 0.097 3.903 17 C -0.153 4.153 18 C 0.054 3.946 19 N -0.295 5.295 20 N -0.313 5.313 21 C 0.251 3.749 22 C -0.542 4.542 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.130 0.870 43 H 0.177 0.823 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 22.192 0.159 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.025 3.975 3 C -0.343 4.343 4 C 0.413 3.587 5 O -0.421 6.421 6 N -0.351 5.351 7 C -0.025 4.025 8 C -0.171 4.171 9 C -0.160 4.160 10 C 0.074 3.926 11 H 0.104 0.896 12 C -0.047 4.047 13 C -0.180 4.180 14 C -0.061 4.061 15 N -0.198 5.198 16 C -0.060 4.060 17 C -0.173 4.173 18 C -0.132 4.132 19 N -0.115 5.115 20 N -0.090 5.090 21 C 0.134 3.866 22 C -0.580 4.580 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.735 3.265 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.148 0.852 43 H 0.193 0.807 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.924 21.061 -1.040 21.654 hybrid contribution -0.398 -0.119 1.770 1.818 sum 4.526 20.942 0.730 21.437 Atomic orbital electron populations 1.20504 0.86979 1.04154 1.03393 1.21399 0.94837 0.86515 0.94735 1.19563 0.93296 0.92048 1.29348 1.17036 0.82653 0.83315 0.75660 1.90732 1.21116 1.82742 1.47520 1.48289 1.21735 1.04690 1.60396 1.22488 0.85376 0.99246 0.95396 1.22860 1.01981 0.93874 0.98380 1.22741 0.96457 0.98007 0.98773 1.20383 0.99677 0.81276 0.91268 0.89570 1.20510 0.93822 0.94270 0.96079 1.21948 0.99095 0.98952 0.97987 1.22685 0.96447 0.97709 0.89229 1.67645 1.04494 1.10128 1.37569 1.22706 0.95268 0.93091 0.94900 1.21913 1.00531 1.00809 0.94082 1.23886 0.96373 0.92483 1.00493 1.77146 0.98621 1.12227 1.23517 1.49355 1.02445 1.08235 1.48918 1.19846 0.96425 0.70906 0.99395 1.21206 1.47662 0.98185 0.90983 0.91720 1.24925 0.94434 0.95988 0.98271 1.69904 1.44305 1.07261 1.31135 0.86385 0.78871 0.77805 0.83480 1.19854 1.20847 1.19890 0.90241 0.89773 0.89788 0.89492 0.91440 0.90285 0.89552 0.90268 0.89680 0.84967 0.82941 0.82972 0.85182 0.80665 0.92600 0.92483 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.22 36.01 0.33 -1.34 16 2 C 0.16 3.30 7.00 -81.60 -0.57 2.72 16 3 C -0.33 -5.97 5.77 -105.07 -0.61 -6.58 16 4 C 0.62 10.39 7.34 -12.52 -0.09 10.30 16 5 O -0.54 -10.55 15.54 5.28 0.08 -10.47 16 6 N -0.62 -7.67 2.44 -165.59 -0.40 -8.08 16 7 C 0.10 0.92 5.21 -2.53 -0.01 0.91 16 8 C -0.13 -0.89 7.09 -24.45 -0.17 -1.06 16 9 C -0.12 -0.83 6.49 -24.76 -0.16 -0.99 16 10 C 0.18 1.84 3.05 -68.10 -0.21 1.63 16 11 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 12 C -0.04 -0.42 4.22 -104.32 -0.44 -0.87 16 13 C -0.16 -1.69 9.79 -39.44 -0.39 -2.07 16 14 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 15 N -0.49 -6.24 10.36 -13.25 -0.14 -6.37 16 16 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 17 C -0.15 -1.77 9.29 -39.44 -0.37 -2.13 16 18 C 0.05 0.94 10.18 -16.98 -0.17 0.76 16 19 N -0.30 -6.27 12.50 30.86 0.39 -5.88 16 20 N -0.31 -7.01 3.56 -57.78 -0.21 -7.22 16 21 C 0.25 6.22 5.78 -5.20 -0.03 6.19 16 22 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 23 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.42 13.29 55.43 0.74 -23.69 16 26 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 32 H 0.08 1.46 7.22 -51.93 -0.38 1.09 16 33 H 0.09 0.92 6.92 -51.93 -0.36 0.56 16 34 H 0.07 0.54 7.28 -51.93 -0.38 0.16 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.52 7.80 -51.93 -0.41 0.11 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.13 1.39 7.81 -52.49 -0.41 0.98 16 43 H 0.18 2.26 5.96 -52.49 -0.31 1.95 16 44 H 0.06 1.38 7.64 -51.92 -0.40 0.98 16 45 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -32.44 383.57 -8.87 -41.31 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.38 Total: 2.86 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.70 Total: -3.75 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.38 Total: -51.24 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.44 -8.87 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.132 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds