Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38040 * 126.29445 * 2 1 4 4 C 1.47426 * 126.41398 * 0.02562 * 3 2 1 5 5 O 1.21602 * 120.00087 * 335.08252 * 4 3 2 6 6 N 1.34785 * 119.99850 * 155.07579 * 4 3 2 7 7 C 1.47417 * 125.64852 * 354.59704 * 6 4 3 8 8 C 1.54910 * 104.83126 * 204.08992 * 7 6 4 9 9 C 1.55403 * 101.66735 * 323.07564 * 8 7 6 10 10 C 1.47023 * 125.64539 * 174.55486 * 6 4 3 11 11 H 1.08997 * 109.88604 * 59.40504 * 10 6 4 12 12 C 1.50699 * 109.87975 * 298.39376 * 10 6 4 13 13 C 1.38652 * 120.78858 * 140.31988 * 12 10 6 14 14 C 1.38209 * 119.16286 * 180.02562 * 13 12 10 15 15 N 1.31868 * 120.76477 * 0.25956 * 14 13 12 16 16 C 1.31875 * 121.72184 * 359.46890 * 15 14 13 17 17 C 1.38203 * 120.76636 * 0.52885 * 16 15 14 18 18 C 1.41291 * 107.17266 * 179.76007 * 3 2 1 19 19 N 1.30447 * 108.02305 * 0.24220 * 18 3 2 20 20 N 1.34266 * 126.28747 * 180.17843 * 2 1 3 21 21 C 1.46493 * 125.75842 * 359.97438 * 20 2 1 22 22 C 1.50694 * 109.47162 * 270.26816 * 21 20 2 23 23 H 1.07998 * 120.00400 * 359.97438 * 22 21 20 24 24 C 1.37877 * 119.99971 * 179.97438 * 22 21 20 25 25 N 1.31510 * 120.00200 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99954 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47254 * 60.00250 * 26 24 22 28 28 H 1.48499 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47261 * 300.00215 * 26 24 22 30 30 H 1.08999 * 109.47019 * 89.99854 * 1 2 3 31 31 H 1.08996 * 109.47284 * 210.00147 * 1 2 3 32 32 H 1.08994 * 109.46849 * 330.00334 * 1 2 3 33 33 H 1.08998 * 110.36764 * 322.92734 * 7 6 4 34 34 H 1.08999 * 110.37074 * 85.25229 * 7 6 4 35 35 H 1.09001 * 111.00036 * 81.06865 * 8 7 6 36 36 H 1.08997 * 111.00272 * 204.87604 * 8 7 6 37 37 H 1.08999 * 110.69192 * 277.04913 * 9 8 7 38 38 H 1.09003 * 110.84957 * 153.69509 * 9 8 7 39 39 H 1.08000 * 120.42077 * 0.04085 * 13 12 10 40 40 H 1.07996 * 119.61462 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.61504 * 180.26853 * 16 15 14 42 42 H 1.07998 * 120.41728 * 179.76292 * 17 16 15 43 43 H 1.07995 * 125.99274 * 180.27560 * 18 3 2 44 44 H 1.09007 * 109.46903 * 30.26632 * 21 20 2 45 45 H 1.09001 * 109.47109 * 150.26018 * 21 20 2 46 46 H 0.97009 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.7931 2.8170 -0.4427 6 7 2.6965 3.4782 0.4924 7 6 3.9913 3.2491 1.1590 8 6 4.2058 4.4990 2.0487 9 6 3.6179 5.6259 1.1545 10 6 2.4362 4.9246 0.4522 11 1 1.5074 5.1489 0.9765 12 6 2.3419 5.3887 -0.9785 13 6 1.3971 6.3297 -1.3585 14 6 1.3398 6.7310 -2.6798 15 7 2.1665 6.2260 -3.5745 16 6 3.0807 5.3334 -3.2480 17 6 3.1973 4.8845 -1.9461 18 6 3.6591 0.6498 0.0057 19 7 3.6341 -0.6545 0.0036 20 7 2.3016 -1.0823 -0.0034 21 6 1.8501 -2.4758 -0.0072 22 6 1.6894 -2.9557 1.4123 23 1 1.9028 -2.2894 2.2350 24 6 1.2700 -4.2454 1.6607 25 7 1.0107 -5.0570 0.6589 26 14 1.0716 -4.8405 3.4202 27 1 0.0686 -3.9965 4.1181 28 1 0.6137 -6.2531 3.4163 29 1 2.3752 -4.7451 4.1251 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.9480 2.3495 1.7728 34 1 4.7890 3.1677 0.4207 35 1 3.6499 4.4139 2.9825 36 1 5.2658 4.6642 2.2412 37 1 4.3549 5.9630 0.4255 38 1 3.2657 6.4594 1.7623 39 1 0.7147 6.7440 -0.6312 40 1 0.6065 7.4632 -2.9839 41 1 3.7432 4.9456 -4.0077 42 1 3.9455 4.1506 -1.6857 43 1 4.5449 1.2674 0.0113 44 1 0.8935 -2.5464 -0.5250 45 1 2.5867 -3.0951 -0.5190 46 1 0.7159 -5.9646 0.8336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895574529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = 54.938315 kcal Electronic energy + Delta-G solvation = -29440.321819 eV Core-core repulsion = 25523.510441 eV Total energy + Delta-G solvation = -3916.811378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.42291 -41.49327 -40.17317 -38.28548 -35.84156 -34.23126 -33.77288 -32.86858 -32.37135 -32.06354 -29.70588 -28.91277 -28.21831 -25.55267 -25.19059 -24.39924 -23.71114 -22.43163 -22.10245 -20.85987 -19.84630 -18.88131 -18.31153 -18.05823 -17.36414 -16.86343 -16.69466 -16.48708 -16.36415 -16.13016 -15.79415 -15.17274 -14.95939 -14.87349 -14.51360 -14.35432 -14.31893 -14.22208 -14.09239 -13.71164 -13.66766 -13.59970 -13.14616 -13.12066 -12.94310 -12.71331 -12.60568 -12.41164 -12.30945 -12.05677 -11.86938 -11.80464 -11.62391 -10.90949 -10.76921 -10.53303 -10.38649 -10.27808 -10.04934 -9.75859 -9.41077 -8.38439 -6.55501 0.24127 0.28935 0.68106 1.31424 1.38146 1.38922 1.47290 1.62661 2.06009 2.31716 2.39697 2.89498 2.93676 3.45457 3.57731 3.61433 3.69642 3.74259 3.85221 3.94807 4.08999 4.16569 4.19916 4.23798 4.27838 4.39988 4.42118 4.59236 4.60007 4.71870 4.76286 4.80986 4.84957 4.87931 4.95208 4.96360 4.98597 5.08998 5.11067 5.14687 5.26680 5.39818 5.47565 5.50538 5.67808 5.73432 5.80563 6.02276 6.51410 6.53503 6.81033 7.04795 7.15802 7.25609 8.69314 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002787 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.098665 B =10044.247701 C =10610.690058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.141 3.859 3 C -0.324 4.324 4 C 0.620 3.380 5 O -0.577 6.577 6 N -0.608 5.608 7 C 0.085 3.915 8 C -0.122 4.122 9 C -0.110 4.110 10 C 0.173 3.827 11 H 0.081 0.919 12 C -0.047 4.047 13 C -0.165 4.165 14 C 0.087 3.913 15 N -0.515 5.515 16 C 0.083 3.917 17 C -0.162 4.162 18 C 0.078 3.922 19 N -0.333 5.333 20 N -0.336 5.336 21 C 0.268 3.732 22 C -0.556 4.556 23 H 0.054 0.946 24 C 0.024 3.976 25 N -0.918 5.918 26 Si 0.972 3.028 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.271 1.271 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.137 0.863 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.031 0.969 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 24.388 1.764 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.006 3.994 3 C -0.340 4.340 4 C 0.411 3.589 5 O -0.458 6.458 6 N -0.341 5.341 7 C -0.037 4.037 8 C -0.160 4.160 9 C -0.148 4.148 10 C 0.070 3.930 11 H 0.099 0.901 12 C -0.056 4.056 13 C -0.185 4.185 14 C -0.070 4.070 15 N -0.225 5.225 16 C -0.073 4.073 17 C -0.182 4.182 18 C -0.108 4.108 19 N -0.153 5.153 20 N -0.113 5.113 21 C 0.149 3.851 22 C -0.594 4.594 23 H 0.072 0.928 24 C -0.178 4.178 25 N -0.555 5.555 26 Si 0.795 3.205 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.171 0.829 40 H 0.193 0.807 41 H 0.184 0.816 42 H 0.155 0.845 43 H 0.237 0.763 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.042 23.300 0.578 24.078 hybrid contribution -0.698 -0.655 1.233 1.561 sum 5.344 22.645 1.810 23.337 Atomic orbital electron populations 1.20458 0.86112 1.03806 1.03805 1.21870 0.95774 0.86735 0.95039 1.19855 0.93412 0.92705 1.27981 1.16813 0.82768 0.83302 0.76020 1.90711 1.22586 1.83156 1.49308 1.48251 1.22017 1.05124 1.58722 1.22801 0.84281 1.00393 0.96205 1.22853 1.03689 0.91915 0.97511 1.22750 0.95034 0.98216 0.98794 1.20626 1.01225 0.79965 0.91176 0.90092 1.20712 0.93940 0.94479 0.96508 1.22231 0.99118 0.98775 0.98353 1.23137 0.96512 0.97942 0.89380 1.67665 1.05346 1.10972 1.38531 1.23019 0.95521 0.93148 0.95618 1.22027 1.00979 1.01102 0.94134 1.24544 0.97462 0.91424 0.97400 1.77099 0.98290 1.14275 1.25651 1.49083 1.03327 1.07658 1.51279 1.19353 0.95139 0.72327 0.98241 1.21364 1.48032 0.98530 0.91474 0.92762 1.25752 0.93794 0.95937 1.02313 1.69996 1.44755 1.07660 1.33138 0.85395 0.78907 0.77641 0.78529 1.19049 1.19904 1.19655 0.89470 0.90883 0.89111 0.90686 0.89304 0.90335 0.86833 0.89445 0.87585 0.82901 0.80673 0.81568 0.84525 0.76318 0.93469 0.95102 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.12 9.22 71.24 0.66 -2.46 16 2 C 0.14 5.86 7.00 42.14 0.29 6.15 16 3 C -0.32 -11.67 5.77 -20.15 -0.12 -11.79 16 4 C 0.62 20.14 7.34 86.66 0.64 20.77 16 5 O -0.58 -22.20 15.54 -4.04 -0.06 -22.26 16 6 N -0.61 -13.86 2.44 -796.04 -1.94 -15.80 16 7 C 0.08 1.32 5.21 86.86 0.45 1.78 16 8 C -0.12 -1.14 7.09 32.07 0.23 -0.91 16 9 C -0.11 -1.08 6.49 31.87 0.21 -0.88 16 10 C 0.17 3.15 3.05 44.59 0.14 3.29 16 11 H 0.08 1.58 8.05 -2.39 -0.02 1.56 16 12 C -0.05 -0.98 4.22 -19.67 -0.08 -1.06 16 13 C -0.16 -3.20 9.79 22.36 0.22 -2.98 16 14 C 0.09 1.79 11.18 84.68 0.95 2.74 16 15 N -0.52 -12.72 10.36 -195.84 -2.03 -14.75 16 16 C 0.08 1.87 11.18 84.68 0.95 2.82 16 17 C -0.16 -3.49 9.29 22.36 0.21 -3.28 16 18 C 0.08 2.60 10.18 85.65 0.87 3.47 16 19 N -0.33 -14.26 12.50 -56.28 -0.70 -14.96 16 20 N -0.34 -15.54 3.56 -336.71 -1.20 -16.74 16 21 C 0.27 13.88 5.78 85.63 0.49 14.37 16 22 C -0.56 -30.35 9.39 25.60 0.24 -30.11 16 23 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 24 C 0.02 1.26 5.46 84.66 0.46 1.72 16 25 N -0.92 -51.34 13.29 21.45 0.28 -51.05 16 26 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 30 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.07 2.84 7.71 -2.39 -0.02 2.82 16 32 H 0.09 3.22 7.22 -2.39 -0.02 3.20 16 33 H 0.07 1.39 6.92 -2.39 -0.02 1.38 16 34 H 0.09 1.04 7.28 -2.39 -0.02 1.03 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.78 7.80 -2.39 -0.02 0.76 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.14 2.63 7.81 -2.91 -0.02 2.60 16 43 H 0.22 5.00 5.96 -2.91 -0.02 4.98 16 44 H 0.05 2.47 7.64 -2.38 -0.02 2.45 16 45 H 0.03 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -72.22 383.57 4.17 -68.05 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.99 Total: 19.76 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.80 Total: 3.64 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.59 Total: -113.30 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.22 4.17 -68.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.990 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds