Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.91634 * 2 1 4 4 C 1.55387 * 111.18291 * 235.94190 * 2 1 3 5 5 N 1.47421 * 104.87321 * 204.97895 * 4 2 1 6 6 C 1.36945 * 125.64745 * 204.17092 * 5 4 2 7 7 H 1.08000 * 119.99837 * 5.10275 * 6 5 4 8 8 C 1.38818 * 119.99733 * 185.10108 * 6 5 4 9 9 N 1.31618 * 119.99843 * 5.19757 * 8 6 5 10 10 Si 1.86796 * 119.99678 * 185.19340 * 8 6 5 11 11 H 1.48495 * 109.47117 * 85.00425 * 10 8 6 12 12 H 1.48505 * 109.47012 * 205.00236 * 10 8 6 13 13 H 1.48503 * 109.47208 * 324.99977 * 10 8 6 14 14 C 1.47023 * 108.70486 * 24.13244 * 5 4 2 15 15 C 1.54324 * 107.26945 * 358.94425 * 14 5 4 16 16 H 1.08996 * 110.71942 * 219.26261 * 15 14 5 17 17 N 1.46500 * 110.72064 * 96.16661 * 15 14 5 18 18 C 1.34771 * 119.99892 * 88.84364 * 17 15 14 19 19 O 1.21541 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.47911 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.32381 * 120.63470 * 354.43917 * 20 18 17 22 22 N 1.28092 * 123.18052 * 180.02562 * 21 20 18 23 23 C 1.31793 * 123.49961 * 359.97438 * 22 21 20 24 24 C 1.40413 * 119.13598 * 0.02562 * 23 22 21 25 25 C 1.40230 * 122.73035 * 180.02562 * 24 23 22 26 26 C 1.36262 * 119.36318 * 180.22071 * 25 24 23 27 27 C 1.39375 * 121.07552 * 359.50020 * 26 25 24 28 28 C 1.36365 * 121.08584 * 0.47830 * 27 26 25 29 29 C 1.39835 * 119.42523 * 359.78269 * 28 27 26 30 30 H 1.09007 * 109.46868 * 296.09419 * 1 2 3 31 31 H 1.08998 * 109.47406 * 56.09283 * 1 2 3 32 32 H 1.08997 * 109.47329 * 176.09817 * 1 2 3 33 33 H 1.09001 * 109.47016 * 183.90318 * 3 2 1 34 34 H 1.09000 * 109.47240 * 303.90833 * 3 2 1 35 35 H 1.08995 * 109.46608 * 63.90576 * 3 2 1 36 36 H 1.09008 * 110.34037 * 86.13239 * 4 2 1 37 37 H 1.08995 * 110.44826 * 323.88256 * 4 2 1 38 38 H 0.97006 * 119.99573 * 179.97438 * 9 8 6 39 39 H 1.08994 * 109.88411 * 239.52533 * 14 5 4 40 40 H 1.09006 * 109.87910 * 118.35419 * 14 5 4 41 41 H 0.97002 * 119.99755 * 268.84363 * 17 15 14 42 42 H 1.08000 * 120.43296 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.32230 * 359.94771 * 25 24 23 44 44 H 1.08004 * 119.45916 * 179.71900 * 26 25 24 45 45 H 1.07996 * 119.45656 * 180.26493 * 27 26 25 46 46 H 1.08006 * 120.28807 * 179.79556 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0915 -0.8114 -1.2004 5 7 3.4325 -1.2461 -0.7691 6 6 4.4722 -1.5694 -1.5996 7 1 4.3720 -1.4373 -2.6668 8 6 5.6550 -2.0668 -1.0698 9 7 5.7422 -2.3242 0.2180 10 14 7.1226 -2.3709 -2.1846 11 1 7.8913 -1.1107 -2.3458 12 1 7.9957 -3.4096 -1.5812 13 1 6.6475 -2.8343 -3.5131 14 6 3.4691 -1.2743 0.7004 15 6 2.0862 -0.8080 1.2022 16 1 2.1893 -0.1708 2.0804 17 7 1.2268 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7233 19 8 1.9705 -2.0633 3.5859 20 6 0.3748 -3.6747 3.0202 21 7 -0.5011 -4.1079 2.1272 22 7 -1.2764 -5.1066 2.3329 23 6 -1.2824 -5.8046 3.4508 24 6 -0.3994 -5.4496 4.4832 25 6 -0.3419 -6.1397 5.7026 26 6 0.5388 -5.7332 6.6596 27 6 1.3889 -4.6504 6.4416 28 6 1.3596 -3.9575 5.2675 29 6 0.4648 -4.3430 4.2644 30 1 -0.3633 0.4520 0.9230 31 1 -0.3634 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4025 -0.0700 34 1 1.6704 1.9733 -0.8529 35 1 1.7837 1.9298 0.9229 36 1 2.1641 -0.1784 -2.0848 37 1 1.4599 -1.6759 -1.4044 38 1 6.5686 -2.6721 0.5882 39 1 4.2428 -0.5987 1.0650 40 1 3.6664 -2.2888 1.0469 41 1 0.6464 -2.3178 0.8075 42 1 -1.9577 -6.6388 3.5713 43 1 -0.9924 -6.9827 5.8832 44 1 0.5812 -6.2608 7.6010 45 1 2.0798 -4.3532 7.2166 46 1 2.0219 -3.1183 5.1136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974824201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 74.261608 kcal Electronic energy + Delta-G solvation = -29833.837449 eV Core-core repulsion = 25917.863991 eV Total energy + Delta-G solvation = -3915.973457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60791 -39.67310 -38.19696 -37.92793 -33.94655 -33.52092 -33.03910 -31.96565 -30.70423 -30.54918 -28.17488 -26.91127 -25.73900 -25.54543 -24.43622 -23.61778 -22.77309 -21.07327 -20.05123 -18.96519 -18.52534 -18.22447 -17.34120 -16.67786 -16.25806 -15.77020 -15.54540 -14.94896 -14.83164 -14.63985 -14.17109 -14.04479 -13.85559 -13.77761 -13.59066 -13.22862 -12.76877 -12.53710 -12.49525 -12.11742 -11.95651 -11.77873 -11.65782 -11.54337 -11.30771 -11.07196 -10.99259 -10.77083 -10.71531 -10.37765 -10.24525 -10.01182 -9.86742 -9.85103 -9.61088 -9.58199 -9.52749 -8.75098 -8.63449 -8.44605 -6.79386 -5.66722 -3.02176 -0.18981 0.41113 1.42575 2.54183 3.09593 3.19833 3.42512 3.47240 3.49194 3.81135 3.86630 4.16382 4.30116 4.43102 4.51154 4.52817 4.81264 4.90509 4.95848 5.00185 5.28277 5.30488 5.34908 5.43161 5.54053 5.56099 5.64547 5.72770 5.81682 5.96081 5.97285 6.05263 6.12072 6.16883 6.18032 6.22840 6.29615 6.39358 6.49662 6.58724 6.65844 6.69621 6.74542 6.95486 7.47170 7.67090 7.77576 7.86761 8.28137 8.38712 8.58801 9.23861 9.85131 10.50694 11.43472 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003469 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.570874 B = 8069.188742 C = 9072.278934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.142 3.858 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.092 0.908 17 N -0.679 5.679 18 C 0.575 3.425 19 O -0.528 6.528 20 C 0.080 3.920 21 N -0.232 5.232 22 N -0.264 5.264 23 C 0.095 3.905 24 C -0.086 4.086 25 C -0.100 4.100 26 C -0.095 4.095 27 C -0.105 4.105 28 C -0.085 4.085 29 C -0.048 4.048 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.408 0.592 42 H 0.179 0.821 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 -3.792 12.250 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.110 0.890 17 N -0.328 5.328 18 C 0.358 3.642 19 O -0.404 6.404 20 C -0.078 4.078 21 N -0.068 5.068 22 N -0.096 5.096 23 C -0.079 4.079 24 C -0.093 4.093 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.104 4.104 29 C -0.055 4.055 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.802 -3.306 11.213 18.862 hybrid contribution 1.135 -0.867 0.581 1.542 sum -13.667 -4.173 11.794 18.528 Atomic orbital electron populations 1.21695 0.94499 1.01534 1.01381 1.22094 0.94610 0.95957 0.96378 1.21594 1.02428 0.93645 1.00613 1.21739 0.87737 0.94700 0.94247 1.44418 1.07623 1.79056 1.01692 1.19023 0.91037 1.36180 0.89441 0.90458 1.24804 0.98317 1.01056 0.96168 1.69956 1.26187 1.49911 1.10541 0.86162 0.82753 0.77493 0.79490 1.21584 1.21794 1.20792 1.21551 0.89118 1.00936 0.83651 1.22605 0.92458 0.85850 0.97475 0.89037 1.45905 1.42806 1.32147 1.11978 1.17350 0.81668 0.81767 0.83426 1.90612 1.41185 1.62419 1.46225 1.23131 0.96188 0.96806 0.91653 1.72741 1.01259 1.06582 1.26253 1.72627 1.15713 1.01697 1.19526 1.24782 0.95410 0.98263 0.89412 1.18913 0.97287 0.96368 0.96739 1.20912 0.99596 0.99641 0.91883 1.21162 0.94689 0.96313 0.99288 1.21282 0.98443 0.94930 0.97800 1.22117 0.96623 1.00297 0.91339 1.18635 0.96973 0.95101 0.94819 0.92868 0.92503 0.92667 0.91228 0.92759 0.93303 0.93988 0.96417 0.93747 0.93823 0.92036 0.75441 0.80367 0.84310 0.85032 0.84783 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.23 37.16 0.31 -1.52 16 2 C -0.09 -1.49 0.84 -152.10 -0.13 -1.62 16 3 C -0.13 -1.97 8.58 37.16 0.32 -1.65 16 4 C 0.14 2.87 6.16 -2.27 -0.01 2.86 16 5 N -0.60 -15.12 3.38 -169.77 -0.57 -15.70 16 6 C -0.23 -6.36 10.27 -15.05 -0.15 -6.51 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 9 N -0.92 -27.42 10.41 55.49 0.58 -26.85 16 10 Si 0.91 22.38 29.56 -169.99 -5.02 17.35 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.17 4.23 4.83 -3.06 -0.01 4.22 16 15 C 0.12 2.31 2.54 -66.09 -0.17 2.14 16 16 H 0.09 1.74 7.53 -51.93 -0.39 1.35 16 17 N -0.68 -12.20 4.50 -52.95 -0.24 -12.44 16 18 C 0.58 10.48 7.78 -12.30 -0.10 10.38 16 19 O -0.53 -10.36 13.27 5.33 0.07 -10.29 16 20 C 0.08 1.32 6.90 -82.42 -0.57 0.75 16 21 N -0.23 -3.80 10.70 33.56 0.36 -3.44 16 22 N -0.26 -3.86 11.41 30.90 0.35 -3.51 16 23 C 0.10 1.05 11.20 -16.75 -0.19 0.87 16 24 C -0.09 -0.99 5.75 -106.85 -0.61 -1.61 16 25 C -0.10 -0.83 9.84 -39.54 -0.39 -1.22 16 26 C -0.10 -0.76 9.95 -39.87 -0.40 -1.16 16 27 C -0.11 -1.04 9.95 -39.83 -0.40 -1.44 16 28 C -0.08 -1.13 9.27 -39.66 -0.37 -1.50 16 29 C -0.05 -0.69 5.77 -106.57 -0.61 -1.30 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.75 6.44 -51.93 -0.33 0.42 16 33 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.83 8.06 -51.92 -0.42 0.41 16 37 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.04 1.18 7.80 -51.93 -0.40 0.78 16 40 H 0.06 1.74 7.01 -51.93 -0.36 1.38 16 41 H 0.41 7.02 6.41 -40.82 -0.26 6.76 16 42 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.18 2.67 5.12 -52.48 -0.27 2.41 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.19 373.09 -8.63 -41.82 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.20 Total: 6.04 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.58 Total: 1.38 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.48 Total: -61.93 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.19 -8.63 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974824201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.080 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds