Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.91634 * 2 1 4 4 C 1.55387 * 111.18291 * 235.94190 * 2 1 3 5 5 N 1.47421 * 104.87321 * 204.97895 * 4 2 1 6 6 C 1.36945 * 125.64745 * 204.17092 * 5 4 2 7 7 H 1.08000 * 119.99837 * 5.10275 * 6 5 4 8 8 C 1.38818 * 119.99733 * 185.10108 * 6 5 4 9 9 N 1.31618 * 119.99843 * 5.19757 * 8 6 5 10 10 Si 1.86796 * 119.99678 * 185.19340 * 8 6 5 11 11 H 1.48495 * 109.47117 * 85.00425 * 10 8 6 12 12 H 1.48505 * 109.47012 * 205.00236 * 10 8 6 13 13 H 1.48503 * 109.47208 * 324.99977 * 10 8 6 14 14 C 1.47023 * 108.70486 * 24.13244 * 5 4 2 15 15 C 1.54324 * 107.26945 * 358.94425 * 14 5 4 16 16 H 1.08996 * 110.71942 * 219.26261 * 15 14 5 17 17 N 1.46500 * 110.72064 * 96.16661 * 15 14 5 18 18 C 1.34771 * 119.99892 * 88.84364 * 17 15 14 19 19 O 1.21541 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.47911 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.32381 * 120.63470 * 354.43917 * 20 18 17 22 22 N 1.28092 * 123.18052 * 180.02562 * 21 20 18 23 23 C 1.31793 * 123.49961 * 359.97438 * 22 21 20 24 24 C 1.40413 * 119.13598 * 0.02562 * 23 22 21 25 25 C 1.40230 * 122.73035 * 180.02562 * 24 23 22 26 26 C 1.36262 * 119.36318 * 180.22071 * 25 24 23 27 27 C 1.39375 * 121.07552 * 359.50020 * 26 25 24 28 28 C 1.36365 * 121.08584 * 0.47830 * 27 26 25 29 29 C 1.39835 * 119.42523 * 359.78269 * 28 27 26 30 30 H 1.09007 * 109.46868 * 296.09419 * 1 2 3 31 31 H 1.08998 * 109.47406 * 56.09283 * 1 2 3 32 32 H 1.08997 * 109.47329 * 176.09817 * 1 2 3 33 33 H 1.09001 * 109.47016 * 183.90318 * 3 2 1 34 34 H 1.09000 * 109.47240 * 303.90833 * 3 2 1 35 35 H 1.08995 * 109.46608 * 63.90576 * 3 2 1 36 36 H 1.09008 * 110.34037 * 86.13239 * 4 2 1 37 37 H 1.08995 * 110.44826 * 323.88256 * 4 2 1 38 38 H 0.97006 * 119.99573 * 179.97438 * 9 8 6 39 39 H 1.08994 * 109.88411 * 239.52533 * 14 5 4 40 40 H 1.09006 * 109.87910 * 118.35419 * 14 5 4 41 41 H 0.97002 * 119.99755 * 268.84363 * 17 15 14 42 42 H 1.08000 * 120.43296 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.32230 * 359.94771 * 25 24 23 44 44 H 1.08004 * 119.45916 * 179.71900 * 26 25 24 45 45 H 1.07996 * 119.45656 * 180.26493 * 27 26 25 46 46 H 1.08006 * 120.28807 * 179.79556 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0915 -0.8114 -1.2004 5 7 3.4325 -1.2461 -0.7691 6 6 4.4722 -1.5694 -1.5996 7 1 4.3720 -1.4373 -2.6668 8 6 5.6550 -2.0668 -1.0698 9 7 5.7422 -2.3242 0.2180 10 14 7.1226 -2.3709 -2.1846 11 1 7.8913 -1.1107 -2.3458 12 1 7.9957 -3.4096 -1.5812 13 1 6.6475 -2.8343 -3.5131 14 6 3.4691 -1.2743 0.7004 15 6 2.0862 -0.8080 1.2022 16 1 2.1893 -0.1708 2.0804 17 7 1.2268 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7233 19 8 1.9705 -2.0633 3.5859 20 6 0.3748 -3.6747 3.0202 21 7 -0.5011 -4.1079 2.1272 22 7 -1.2764 -5.1066 2.3329 23 6 -1.2824 -5.8046 3.4508 24 6 -0.3994 -5.4496 4.4832 25 6 -0.3419 -6.1397 5.7026 26 6 0.5388 -5.7332 6.6596 27 6 1.3889 -4.6504 6.4416 28 6 1.3596 -3.9575 5.2675 29 6 0.4648 -4.3430 4.2644 30 1 -0.3633 0.4520 0.9230 31 1 -0.3634 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4025 -0.0700 34 1 1.6704 1.9733 -0.8529 35 1 1.7837 1.9298 0.9229 36 1 2.1641 -0.1784 -2.0848 37 1 1.4599 -1.6759 -1.4044 38 1 6.5686 -2.6721 0.5882 39 1 4.2428 -0.5987 1.0650 40 1 3.6664 -2.2888 1.0469 41 1 0.6464 -2.3178 0.8075 42 1 -1.9577 -6.6388 3.5713 43 1 -0.9924 -6.9827 5.8832 44 1 0.5812 -6.2608 7.6010 45 1 2.0798 -4.3532 7.2166 46 1 2.0219 -3.1183 5.1136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974824201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 51.991571 kcal Electronic energy + Delta-G solvation = -29834.803150 eV Core-core repulsion = 25917.863991 eV Total energy + Delta-G solvation = -3916.939159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61820 -41.13573 -39.47502 -39.05685 -35.76609 -34.76384 -34.34204 -32.85402 -32.63588 -31.49955 -29.86585 -28.15301 -27.49187 -26.80956 -25.35164 -25.16651 -23.86503 -22.52859 -21.77019 -20.38784 -19.63822 -19.15219 -18.71016 -18.43036 -17.44542 -16.99526 -16.84505 -16.60752 -16.04118 -15.72635 -15.62173 -15.44509 -15.34813 -15.02179 -14.78219 -14.60473 -14.03206 -13.82822 -13.63404 -13.52588 -13.30461 -13.08584 -12.99735 -12.87134 -12.72119 -12.65055 -12.57590 -12.54620 -12.15153 -11.87136 -11.76215 -11.72686 -11.56837 -11.33693 -10.92748 -10.83403 -10.73867 -10.42341 -10.13488 -9.54051 -8.90262 -7.84583 -5.22461 -1.14947 -0.48628 0.52888 1.42750 1.45529 1.46162 1.53571 1.84410 2.06089 2.47983 2.73959 2.86607 3.26487 3.32692 3.38153 3.45075 3.57957 3.68181 3.70538 3.91576 3.92962 4.04179 4.18388 4.22730 4.35995 4.42813 4.48211 4.56384 4.64100 4.78034 4.82968 4.85239 4.91330 4.95619 5.03099 5.10724 5.15107 5.17690 5.23976 5.31270 5.31657 5.40314 5.44879 5.53244 5.63141 5.73180 5.76806 6.16466 6.33630 6.96793 7.07022 7.54760 7.75673 8.40664 9.24190 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003469 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.570874 B = 8069.188742 C = 9072.278934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.121 4.121 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.239 4.239 7 H 0.086 0.914 8 C -0.068 4.068 9 N -0.953 5.953 10 Si 0.978 3.022 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.191 3.809 15 C 0.133 3.867 16 H 0.090 0.910 17 N -0.677 5.677 18 C 0.571 3.429 19 O -0.552 6.552 20 C 0.049 3.951 21 N -0.247 5.247 22 N -0.302 5.302 23 C 0.120 3.880 24 C -0.101 4.101 25 C -0.078 4.078 26 C -0.092 4.092 27 C -0.087 4.087 28 C -0.128 4.128 29 C -0.070 4.070 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.244 0.756 39 H 0.003 0.997 40 H 0.013 0.987 41 H 0.412 0.588 42 H 0.232 0.768 43 H 0.189 0.811 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.698 -5.469 13.319 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.179 4.179 4 C 0.012 3.988 5 N -0.345 5.345 6 C -0.368 4.368 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.192 1.192 14 C 0.064 3.936 15 C 0.028 3.972 16 H 0.108 0.892 17 N -0.327 5.327 18 C 0.355 3.645 19 O -0.430 6.430 20 C -0.109 4.109 21 N -0.083 5.083 22 N -0.133 5.133 23 C -0.053 4.053 24 C -0.109 4.109 25 C -0.097 4.097 26 C -0.111 4.111 27 C -0.107 4.107 28 C -0.148 4.148 29 C -0.077 4.077 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.248 0.752 43 H 0.206 0.794 44 H 0.195 0.805 45 H 0.173 0.827 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.678 -4.973 12.249 22.074 hybrid contribution 1.970 -0.486 0.405 2.069 sum -15.707 -5.458 12.654 20.896 Atomic orbital electron populations 1.21652 0.91222 1.02190 1.03216 1.22073 0.96965 0.95612 0.92824 1.21581 1.00205 0.93206 1.02904 1.21964 0.85502 0.95315 0.96045 1.44668 1.09144 1.78906 1.01759 1.19479 0.91926 1.35116 0.90268 0.89604 1.25684 1.01259 1.01621 0.97521 1.70230 1.26217 1.51282 1.12463 0.85093 0.79080 0.77094 0.78070 1.21006 1.22536 1.19212 1.21124 0.91451 0.97225 0.83771 1.22277 0.90154 0.86448 0.98301 0.89212 1.45798 1.42584 1.32043 1.12305 1.17792 0.81514 0.82149 0.83011 1.90603 1.42228 1.63312 1.46901 1.22823 0.97379 0.97287 0.93395 1.72618 1.01448 1.07539 1.26731 1.72548 1.16565 1.02498 1.21728 1.25592 0.94414 0.97702 0.87587 1.19268 0.97032 0.95962 0.98606 1.21516 0.99072 0.99476 0.89664 1.21666 0.93248 0.95191 1.00995 1.21657 0.98206 0.94367 0.96431 1.21897 0.97942 1.01485 0.93450 1.18837 0.98260 0.96408 0.94183 0.91566 0.89958 0.92787 0.94665 0.90138 0.91263 0.92906 0.96113 0.94702 0.97921 0.96927 0.74978 0.75155 0.79353 0.80550 0.82650 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.23 71.98 0.59 -2.62 16 2 C -0.07 -2.47 0.84 -50.62 -0.04 -2.51 16 3 C -0.12 -3.74 8.58 71.98 0.62 -3.13 16 4 C 0.14 5.59 6.16 87.02 0.54 6.13 16 5 N -0.62 -32.67 3.38 -691.02 -2.34 -35.01 16 6 C -0.24 -13.77 10.27 84.03 0.86 -12.91 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.03 5.46 84.86 0.46 -3.57 16 9 N -0.95 -60.72 10.41 21.65 0.23 -60.49 16 10 Si 0.98 47.56 29.56 68.60 2.03 49.58 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.19 10.13 4.83 86.73 0.42 10.55 16 15 C 0.13 5.44 2.54 46.18 0.12 5.55 16 16 H 0.09 3.67 7.53 -2.39 -0.02 3.66 16 17 N -0.68 -26.10 4.50 -439.73 -1.98 -28.07 16 18 C 0.57 22.74 7.78 86.81 0.68 23.42 16 19 O -0.55 -24.08 13.27 -3.84 -0.05 -24.13 16 20 C 0.05 1.73 6.90 42.43 0.29 2.02 16 21 N -0.25 -8.41 10.70 -47.74 -0.51 -8.92 16 22 N -0.30 -8.65 11.41 -56.15 -0.64 -9.29 16 23 C 0.12 2.32 11.20 85.23 0.95 3.28 16 24 C -0.10 -2.12 5.75 -21.31 -0.12 -2.24 16 25 C -0.08 -0.90 9.84 22.29 0.22 -0.68 16 26 C -0.09 -1.05 9.95 22.08 0.22 -0.83 16 27 C -0.09 -1.59 9.95 22.11 0.22 -1.37 16 28 C -0.13 -3.62 9.27 22.22 0.21 -3.41 16 29 C -0.07 -2.08 5.77 -21.13 -0.12 -2.20 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.42 6.44 -2.39 -0.02 1.40 16 33 H 0.03 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 2.05 8.06 -2.38 -0.02 2.03 16 37 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 38 H 0.24 15.22 8.31 -92.70 -0.77 14.45 16 39 H 0.00 0.16 7.80 -2.39 -0.02 0.14 16 40 H 0.01 0.78 7.01 -2.38 -0.02 0.77 16 41 H 0.41 14.99 6.41 -92.71 -0.59 14.40 16 42 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.19 0.36 8.06 -2.91 -0.02 0.33 16 44 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 45 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.14 4.95 5.12 -2.91 -0.01 4.93 16 Total: -1.00 -82.09 373.09 3.26 -78.82 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.42 Total: 22.03 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.11 Total: 15.47 kcal Atomic # 7 Polarization: -136.54 SS G_CDS: -5.24 Total: -141.78 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -82.09 3.26 -78.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974824201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.816 kcal (2) G-P(sol) polarization free energy of solvation -82.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds