Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.91518 * 2 1 4 4 C 1.55385 * 111.18917 * 235.94184 * 2 1 3 5 5 N 1.47425 * 104.87582 * 204.98178 * 4 2 1 6 6 C 1.36943 * 125.64614 * 204.16818 * 5 4 2 7 7 H 1.07994 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99588 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00002 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99974 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47391 * 90.00224 * 10 8 6 12 12 H 1.48498 * 109.47346 * 210.00174 * 10 8 6 13 13 H 1.48500 * 109.47105 * 329.99982 * 10 8 6 14 14 C 1.47016 * 108.70280 * 24.13213 * 5 4 2 15 15 C 1.54320 * 107.27233 * 358.94007 * 14 5 4 16 16 H 1.08998 * 110.72300 * 219.26629 * 15 14 5 17 17 N 1.46499 * 110.72085 * 96.17225 * 15 14 5 18 18 C 1.34772 * 120.00435 * 88.84462 * 17 15 14 19 19 O 1.21555 * 119.99971 * 359.97438 * 18 17 15 20 20 C 1.47921 * 120.00599 * 180.02562 * 18 17 15 21 21 C 1.38933 * 119.84426 * 180.02562 * 20 18 17 22 22 C 1.40653 * 117.38559 * 179.74919 * 21 20 18 23 23 C 1.40257 * 122.04152 * 179.64389 * 22 21 20 24 24 C 1.36268 * 119.47419 * 180.29184 * 23 22 21 25 25 C 1.39323 * 120.87562 * 0.27549 * 24 23 22 26 26 C 1.36224 * 121.15776 * 0.02562 * 25 24 23 27 27 C 1.40340 * 119.68116 * 0.02562 * 26 25 24 28 28 N 1.33807 * 121.61749 * 179.97438 * 27 26 25 29 29 N 1.28436 * 121.68884 * 180.02562 * 28 27 26 30 30 H 1.09005 * 109.47232 * 296.09679 * 1 2 3 31 31 H 1.09002 * 109.46921 * 56.09448 * 1 2 3 32 32 H 1.08999 * 109.47235 * 176.09578 * 1 2 3 33 33 H 1.09006 * 109.46820 * 183.90408 * 3 2 1 34 34 H 1.08997 * 109.47414 * 303.90234 * 3 2 1 35 35 H 1.08998 * 109.46857 * 63.90339 * 3 2 1 36 36 H 1.09005 * 110.34621 * 86.13026 * 4 2 1 37 37 H 1.09005 * 110.44322 * 323.88299 * 4 2 1 38 38 H 0.97009 * 119.99805 * 180.02562 * 9 8 6 39 39 H 1.09007 * 109.88231 * 239.52539 * 14 5 4 40 40 H 1.08997 * 109.88431 * 118.36175 * 14 5 4 41 41 H 0.97006 * 119.99858 * 268.84762 * 17 15 14 42 42 H 1.07994 * 121.30907 * 0.02562 * 21 20 18 43 43 H 1.08002 * 120.26503 * 0.57199 * 23 22 21 44 44 H 1.08002 * 119.56164 * 180.29769 * 24 23 22 45 45 H 1.08006 * 119.42165 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.16053 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4326 -1.2461 -0.7689 6 6 4.4724 -1.5694 -1.5994 7 1 4.3446 -1.5162 -2.6705 8 6 5.6905 -1.9654 -1.0645 9 7 5.8460 -2.0307 0.2408 10 14 7.1086 -2.4070 -2.1973 11 1 7.9115 -1.1908 -2.4828 12 1 7.9681 -3.4247 -1.5409 13 1 6.5737 -2.9568 -3.4689 14 6 3.4691 -1.2743 0.7005 15 6 2.0862 -0.8080 1.2022 16 1 2.1892 -0.1707 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2426 -2.5143 2.7233 19 8 1.9703 -2.0632 3.5862 20 6 0.3753 -3.6753 3.0201 21 6 0.3939 -4.2464 4.2864 22 6 -0.4552 -5.3445 4.5134 23 6 -0.5093 -5.9997 5.7524 24 6 -1.3470 -7.0624 5.9129 25 6 -2.1448 -7.5090 4.8617 26 6 -2.1122 -6.8995 3.6438 27 6 -1.2616 -5.8023 3.4384 28 7 -1.1983 -5.1750 2.2582 29 7 -0.4200 -4.1711 2.0686 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1637 1.4025 -0.0700 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 2.1643 -0.1784 -2.0848 37 1 1.4599 -1.6760 -1.4043 38 1 6.6975 -2.3071 0.6146 39 1 4.2428 -0.5986 1.0652 40 1 3.6664 -2.2886 1.0471 41 1 0.6464 -2.3177 0.8075 42 1 1.0319 -3.8596 5.0672 43 1 0.1047 -5.6618 6.5741 44 1 -1.3934 -7.5649 6.8678 45 1 -2.8001 -8.3539 5.0147 46 1 -2.7373 -7.2594 2.8400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974891883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 73.052058 kcal Electronic energy + Delta-G solvation = -29331.594259 eV Core-core repulsion = 25415.568352 eV Total energy + Delta-G solvation = -3916.025907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57023 -39.73655 -38.24855 -37.63330 -33.96729 -33.84999 -33.08025 -31.84672 -30.78027 -30.63454 -28.10903 -26.84056 -25.59977 -25.49194 -25.12466 -23.32673 -22.73847 -21.23844 -20.01384 -19.13661 -18.84693 -18.19051 -17.07849 -16.65981 -16.28423 -15.73976 -15.55366 -14.99394 -14.76629 -14.64494 -14.28928 -14.05832 -13.85537 -13.75367 -13.67545 -13.21631 -12.70133 -12.64075 -12.51470 -12.35615 -12.04726 -11.92576 -11.63484 -11.42937 -11.32585 -11.05156 -10.98528 -10.92725 -10.74887 -10.37378 -10.23980 -10.03591 -9.95272 -9.83753 -9.75887 -9.69365 -9.59562 -8.75428 -8.59983 -8.43645 -6.77888 -5.64985 -2.99216 -0.33612 0.14581 1.39797 2.20790 3.14258 3.24616 3.43530 3.48396 3.50602 3.72612 3.75462 3.99150 4.22138 4.31255 4.42321 4.54219 4.66090 4.75294 4.87330 4.97777 5.20584 5.32360 5.33938 5.36913 5.43223 5.49271 5.58515 5.67239 5.81641 5.84741 5.87161 5.92470 5.98179 6.07799 6.19592 6.23520 6.27185 6.31378 6.42261 6.61382 6.67721 6.70905 6.74377 6.98599 7.57591 7.65416 7.81577 7.90595 8.29238 8.33146 8.47894 9.26410 9.87281 10.52847 11.45873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.002983 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.478236 B = 9384.594747 C =10362.684399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.142 3.858 5 N -0.602 5.602 6 C -0.227 4.227 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.121 3.879 16 H 0.091 0.909 17 N -0.684 5.684 18 C 0.573 3.427 19 O -0.531 6.531 20 C 0.003 3.997 21 C -0.030 4.030 22 C -0.075 4.075 23 C -0.093 4.093 24 C -0.100 4.100 25 C -0.095 4.095 26 C -0.079 4.079 27 C 0.069 3.931 28 N -0.202 5.202 29 N -0.188 5.188 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.407 0.593 42 H 0.168 0.832 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -6.416 11.260 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.051 3.949 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.334 5.334 18 C 0.356 3.644 19 O -0.408 6.408 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.083 4.083 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.100 4.100 27 C -0.058 4.058 28 N -0.058 5.058 29 N -0.046 5.046 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.185 0.815 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.915 -5.994 10.371 21.551 hybrid contribution 1.092 -0.703 0.561 1.414 sum -16.823 -6.696 10.932 21.151 Atomic orbital electron populations 1.21691 0.94580 1.01460 1.01332 1.22091 0.94536 0.95974 0.96431 1.21596 1.02510 0.93649 1.00547 1.21740 0.87738 0.94646 0.94267 1.44423 1.07656 1.79045 1.01759 1.19026 0.89230 1.38297 0.88949 0.90447 1.24804 0.97844 1.01868 0.95955 1.69963 1.24165 1.53528 1.09030 0.86136 0.82449 0.77767 0.79503 1.21659 1.21797 1.20774 1.21524 0.89383 1.00501 0.83541 1.22610 0.92425 0.85956 0.97380 0.89151 1.45888 1.43124 1.32336 1.12048 1.17386 0.81741 0.81873 0.83447 1.90808 1.40719 1.62490 1.46759 1.22706 0.98886 0.99037 0.92453 1.22617 0.94246 0.91685 0.97479 1.18831 0.97167 0.96537 0.95755 1.21063 0.98911 0.95584 0.95597 1.21113 0.95164 0.96130 0.99566 1.21092 0.98383 0.99534 0.92493 1.20808 0.97446 0.93447 0.98300 1.20458 0.96782 0.97216 0.91369 1.73880 1.12187 1.01818 1.17895 1.73231 1.00175 1.04072 1.27153 0.92910 0.92540 0.92712 0.91161 0.92811 0.93338 0.94008 0.96399 0.93773 0.92615 0.93403 0.75574 0.81486 0.84122 0.84691 0.84525 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.23 37.16 0.31 -1.53 16 2 C -0.09 -1.52 0.84 -152.10 -0.13 -1.65 16 3 C -0.13 -2.02 8.58 37.16 0.32 -1.70 16 4 C 0.14 2.91 6.16 -2.27 -0.01 2.89 16 5 N -0.60 -15.30 3.38 -169.77 -0.57 -15.87 16 6 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.66 10.31 55.49 0.57 -27.08 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.18 4.39 4.80 -3.07 -0.01 4.37 16 15 C 0.12 2.36 2.54 -66.10 -0.17 2.19 16 16 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 17 N -0.68 -12.41 4.50 -52.95 -0.24 -12.65 16 18 C 0.57 10.53 7.80 -12.30 -0.10 10.43 16 19 O -0.53 -11.00 16.04 5.32 0.09 -10.91 16 20 C 0.00 0.05 6.82 -82.89 -0.57 -0.52 16 21 C -0.03 -0.39 9.51 -38.41 -0.37 -0.76 16 22 C -0.07 -0.85 5.75 -106.80 -0.61 -1.46 16 23 C -0.09 -0.74 9.81 -39.53 -0.39 -1.13 16 24 C -0.10 -0.61 9.96 -39.89 -0.40 -1.01 16 25 C -0.09 -0.59 9.94 -39.90 -0.40 -0.99 16 26 C -0.08 -0.69 10.00 -39.52 -0.40 -1.08 16 27 C 0.07 0.84 6.69 -84.79 -0.57 0.28 16 28 N -0.20 -2.97 11.55 32.24 0.37 -2.60 16 29 N -0.19 -3.02 10.70 33.24 0.36 -2.66 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.83 8.06 -51.93 -0.42 0.42 16 37 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 1.55 7.38 -51.92 -0.38 1.17 16 40 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 41 H 0.41 6.97 6.34 -40.82 -0.26 6.71 16 42 H 0.17 1.93 7.69 -52.49 -0.40 1.52 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 46 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -33.88 378.24 -8.81 -42.70 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.33 Total: 4.35 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.73 Total: 1.51 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.49 Total: -60.87 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.88 -8.81 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974891883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.748 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds