Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.91518 * 2 1 4 4 C 1.55385 * 111.18917 * 235.94184 * 2 1 3 5 5 N 1.47425 * 104.87582 * 204.98178 * 4 2 1 6 6 C 1.36943 * 125.64614 * 204.16818 * 5 4 2 7 7 H 1.07994 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99588 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00002 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99974 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47391 * 90.00224 * 10 8 6 12 12 H 1.48498 * 109.47346 * 210.00174 * 10 8 6 13 13 H 1.48500 * 109.47105 * 329.99982 * 10 8 6 14 14 C 1.47016 * 108.70280 * 24.13213 * 5 4 2 15 15 C 1.54320 * 107.27233 * 358.94007 * 14 5 4 16 16 H 1.08998 * 110.72300 * 219.26629 * 15 14 5 17 17 N 1.46499 * 110.72085 * 96.17225 * 15 14 5 18 18 C 1.34772 * 120.00435 * 88.84462 * 17 15 14 19 19 O 1.21555 * 119.99971 * 359.97438 * 18 17 15 20 20 C 1.47921 * 120.00599 * 180.02562 * 18 17 15 21 21 C 1.38933 * 119.84426 * 180.02562 * 20 18 17 22 22 C 1.40653 * 117.38559 * 179.74919 * 21 20 18 23 23 C 1.40257 * 122.04152 * 179.64389 * 22 21 20 24 24 C 1.36268 * 119.47419 * 180.29184 * 23 22 21 25 25 C 1.39323 * 120.87562 * 0.27549 * 24 23 22 26 26 C 1.36224 * 121.15776 * 0.02562 * 25 24 23 27 27 C 1.40340 * 119.68116 * 0.02562 * 26 25 24 28 28 N 1.33807 * 121.61749 * 179.97438 * 27 26 25 29 29 N 1.28436 * 121.68884 * 180.02562 * 28 27 26 30 30 H 1.09005 * 109.47232 * 296.09679 * 1 2 3 31 31 H 1.09002 * 109.46921 * 56.09448 * 1 2 3 32 32 H 1.08999 * 109.47235 * 176.09578 * 1 2 3 33 33 H 1.09006 * 109.46820 * 183.90408 * 3 2 1 34 34 H 1.08997 * 109.47414 * 303.90234 * 3 2 1 35 35 H 1.08998 * 109.46857 * 63.90339 * 3 2 1 36 36 H 1.09005 * 110.34621 * 86.13026 * 4 2 1 37 37 H 1.09005 * 110.44322 * 323.88299 * 4 2 1 38 38 H 0.97009 * 119.99805 * 180.02562 * 9 8 6 39 39 H 1.09007 * 109.88231 * 239.52539 * 14 5 4 40 40 H 1.08997 * 109.88431 * 118.36175 * 14 5 4 41 41 H 0.97006 * 119.99858 * 268.84762 * 17 15 14 42 42 H 1.07994 * 121.30907 * 0.02562 * 21 20 18 43 43 H 1.08002 * 120.26503 * 0.57199 * 23 22 21 44 44 H 1.08002 * 119.56164 * 180.29769 * 24 23 22 45 45 H 1.08006 * 119.42165 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.16053 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4326 -1.2461 -0.7689 6 6 4.4724 -1.5694 -1.5994 7 1 4.3446 -1.5162 -2.6705 8 6 5.6905 -1.9654 -1.0645 9 7 5.8460 -2.0307 0.2408 10 14 7.1086 -2.4070 -2.1973 11 1 7.9115 -1.1908 -2.4828 12 1 7.9681 -3.4247 -1.5409 13 1 6.5737 -2.9568 -3.4689 14 6 3.4691 -1.2743 0.7005 15 6 2.0862 -0.8080 1.2022 16 1 2.1892 -0.1707 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2426 -2.5143 2.7233 19 8 1.9703 -2.0632 3.5862 20 6 0.3753 -3.6753 3.0201 21 6 0.3939 -4.2464 4.2864 22 6 -0.4552 -5.3445 4.5134 23 6 -0.5093 -5.9997 5.7524 24 6 -1.3470 -7.0624 5.9129 25 6 -2.1448 -7.5090 4.8617 26 6 -2.1122 -6.8995 3.6438 27 6 -1.2616 -5.8023 3.4384 28 7 -1.1983 -5.1750 2.2582 29 7 -0.4200 -4.1711 2.0686 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1637 1.4025 -0.0700 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 2.1643 -0.1784 -2.0848 37 1 1.4599 -1.6760 -1.4043 38 1 6.6975 -2.3071 0.6146 39 1 4.2428 -0.5986 1.0652 40 1 3.6664 -2.2886 1.0471 41 1 0.6464 -2.3177 0.8075 42 1 1.0319 -3.8596 5.0672 43 1 0.1047 -5.6618 6.5741 44 1 -1.3934 -7.5649 6.8678 45 1 -2.8001 -8.3539 5.0147 46 1 -2.7373 -7.2594 2.8400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974891883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = 50.220455 kcal Electronic energy + Delta-G solvation = -29332.584312 eV Core-core repulsion = 25415.568352 eV Total energy + Delta-G solvation = -3917.015960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52378 -41.19857 -39.56577 -38.70036 -35.75498 -34.84525 -34.61867 -32.73846 -32.61952 -31.57054 -29.81682 -28.10903 -27.45290 -26.41869 -26.25370 -24.94343 -23.52375 -22.68184 -21.75581 -20.49522 -19.77613 -19.42553 -18.69965 -18.09178 -17.25393 -17.14100 -16.82710 -16.52766 -15.81806 -15.72188 -15.67192 -15.46093 -15.42782 -15.15112 -14.78028 -14.50497 -14.04302 -13.82576 -13.53933 -13.46648 -13.40462 -13.16551 -13.01486 -12.96525 -12.85244 -12.70273 -12.60609 -12.21905 -12.13659 -11.92665 -11.87698 -11.77706 -11.56403 -11.33919 -11.23533 -10.97917 -10.75130 -10.48424 -10.09973 -9.47190 -8.89992 -7.84015 -5.20606 -1.18382 -0.76918 0.62912 1.22424 1.42967 1.45655 1.54120 1.88795 2.09274 2.48429 2.67865 2.81000 3.16849 3.29693 3.34143 3.43458 3.47031 3.69918 3.72236 3.81566 3.93893 4.05559 4.11993 4.18085 4.36925 4.41926 4.49382 4.51553 4.64660 4.69858 4.84470 4.86305 4.90915 4.94128 5.02128 5.06063 5.11681 5.15967 5.24188 5.25021 5.31576 5.33080 5.44706 5.55362 5.65747 5.70267 5.70938 6.16660 6.37305 6.98682 7.08265 7.33418 7.76658 8.41519 9.25440 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.002983 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.478236 B = 9384.594747 C =10362.684399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.194 3.806 15 C 0.133 3.867 16 H 0.088 0.912 17 N -0.681 5.681 18 C 0.573 3.427 19 O -0.565 6.565 20 C -0.026 4.026 21 C -0.029 4.029 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.081 4.081 25 C -0.070 4.070 26 C -0.098 4.098 27 C 0.052 3.948 28 N -0.223 5.223 29 N -0.214 5.214 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.243 0.757 39 H 0.014 0.986 40 H -0.002 1.002 41 H 0.413 0.587 42 H 0.176 0.824 43 H 0.164 0.836 44 H 0.178 0.822 45 H 0.179 0.821 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.240 -8.028 12.182 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.179 4.179 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.104 0.896 8 C -0.263 4.263 9 N -0.602 5.602 10 Si 0.808 3.192 11 H -0.211 1.211 12 H -0.226 1.226 13 H -0.192 1.192 14 C 0.068 3.932 15 C 0.028 3.972 16 H 0.106 0.894 17 N -0.331 5.331 18 C 0.357 3.643 19 O -0.443 6.443 20 C -0.160 4.160 21 C -0.059 4.059 22 C -0.092 4.092 23 C -0.121 4.121 24 C -0.100 4.100 25 C -0.090 4.090 26 C -0.119 4.119 27 C -0.076 4.076 28 N -0.078 5.078 29 N -0.072 5.072 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.016 0.984 41 H 0.251 0.749 42 H 0.193 0.807 43 H 0.182 0.818 44 H 0.195 0.805 45 H 0.197 0.803 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.980 -7.596 11.252 24.989 hybrid contribution 1.888 -0.431 0.427 1.983 sum -19.092 -8.027 11.678 23.777 Atomic orbital electron populations 1.21651 0.91159 1.02239 1.03204 1.22070 0.96999 0.95541 0.92857 1.21582 1.00161 0.93332 1.02850 1.21975 0.85491 0.95357 0.96012 1.44672 1.09169 1.78963 1.01772 1.19475 0.90071 1.37188 0.89784 0.89570 1.25693 1.00654 1.02636 0.97355 1.70235 1.24112 1.54955 1.10940 0.85060 0.79003 0.77233 0.77942 1.21071 1.22583 1.19195 1.21092 0.91733 0.96674 0.83748 1.22278 0.90156 0.86587 0.98206 0.89436 1.45771 1.42766 1.32102 1.12420 1.17808 0.81402 0.82163 0.82927 1.90766 1.42225 1.63731 1.47625 1.22304 1.00309 0.99400 0.93996 1.22787 0.94481 0.92090 0.96553 1.19090 0.96658 0.96212 0.97205 1.21418 0.99957 0.96053 0.94654 1.21692 0.92755 0.94483 1.01111 1.21661 0.97204 0.99158 0.90940 1.21108 0.97629 0.92958 1.00242 1.20931 0.97730 0.98123 0.90803 1.73738 1.12420 1.01972 1.19715 1.73105 1.01143 1.05255 1.27649 0.91570 0.89980 0.92668 0.94792 0.90154 0.91311 0.92961 0.95831 0.94742 0.96790 0.98403 0.74909 0.80702 0.81838 0.80472 0.80330 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 8.23 71.98 0.59 -2.60 16 2 C -0.07 -2.48 0.84 -50.62 -0.04 -2.53 16 3 C -0.12 -3.83 8.58 71.98 0.62 -3.21 16 4 C 0.14 5.60 6.16 87.02 0.54 6.14 16 5 N -0.62 -32.88 3.38 -691.04 -2.34 -35.22 16 6 C -0.24 -13.66 10.28 84.03 0.86 -12.80 16 7 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 8 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 9 N -0.95 -60.98 10.31 21.65 0.22 -60.75 16 10 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.19 10.41 4.80 86.73 0.42 10.83 16 15 C 0.13 5.48 2.54 46.18 0.12 5.59 16 16 H 0.09 3.65 7.53 -2.39 -0.02 3.64 16 17 N -0.68 -26.11 4.50 -439.71 -1.98 -28.09 16 18 C 0.57 22.55 7.80 86.81 0.68 23.23 16 19 O -0.56 -25.11 16.04 -3.89 -0.06 -25.18 16 20 C -0.03 -0.90 6.82 41.61 0.28 -0.61 16 21 C -0.03 -0.80 9.51 23.03 0.22 -0.58 16 22 C -0.08 -1.83 5.75 -21.27 -0.12 -1.95 16 23 C -0.10 -1.31 9.81 22.30 0.22 -1.09 16 24 C -0.08 -0.57 9.96 22.07 0.22 -0.35 16 25 C -0.07 -0.52 9.94 22.06 0.22 -0.30 16 26 C -0.10 -1.46 10.00 22.31 0.22 -1.24 16 27 C 0.05 1.23 6.69 40.28 0.27 1.50 16 28 N -0.22 -6.74 11.55 -51.93 -0.60 -7.33 16 29 N -0.21 -7.21 10.70 -48.75 -0.52 -7.73 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.42 6.44 -2.39 -0.02 1.41 16 33 H 0.03 1.30 7.91 -2.38 -0.02 1.28 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 2.04 8.06 -2.38 -0.02 2.02 16 37 H 0.02 0.96 8.00 -2.38 -0.02 0.94 16 38 H 0.24 15.26 8.31 -92.70 -0.77 14.49 16 39 H 0.01 0.85 7.38 -2.38 -0.02 0.83 16 40 H 0.00 -0.14 7.41 -2.39 -0.02 -0.16 16 41 H 0.41 14.79 6.34 -92.70 -0.59 14.20 16 42 H 0.18 4.24 7.69 -2.91 -0.02 4.22 16 43 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 46 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -81.98 378.24 2.94 -79.04 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.42 Total: 19.12 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 5.77 Total: 16.28 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -5.21 Total: -139.13 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -81.98 2.94 -79.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974891883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.256 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds