Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.78141 * 2 1 4 4 C 1.54319 * 110.72176 * 236.76156 * 2 1 3 5 5 N 1.47024 * 107.27126 * 219.44493 * 4 2 1 6 6 C 1.36936 * 125.64710 * 178.97548 * 5 4 2 7 7 H 1.07995 * 120.00220 * 347.07499 * 6 5 4 8 8 C 1.38813 * 120.00005 * 167.07784 * 6 5 4 9 9 N 1.31621 * 119.99872 * 350.82028 * 8 6 5 10 10 Si 1.86804 * 120.00255 * 170.82207 * 8 6 5 11 11 H 1.48503 * 109.46963 * 85.73378 * 10 8 6 12 12 H 1.48501 * 109.47110 * 205.73239 * 10 8 6 13 13 H 1.48500 * 109.46775 * 325.73186 * 10 8 6 14 14 C 1.47520 * 108.71743 * 358.94091 * 5 4 2 15 15 C 1.54910 * 104.78234 * 24.11860 * 14 5 4 16 16 H 1.08999 * 111.00629 * 204.90629 * 15 14 5 17 17 N 1.46502 * 111.00529 * 81.08990 * 15 14 5 18 18 C 1.34781 * 119.99889 * 89.58124 * 17 15 14 19 19 O 1.21548 * 120.00000 * 0.02562 * 18 17 15 20 20 C 1.47862 * 120.00070 * 179.72792 * 18 17 15 21 21 C 1.38960 * 121.42065 * 354.35833 * 20 18 17 22 22 N 1.32573 * 120.33739 * 179.97438 * 21 20 18 23 23 N 1.28385 * 123.43765 * 0.02562 * 22 21 20 24 24 C 1.33459 * 121.84910 * 0.02562 * 23 22 21 25 25 C 1.40588 * 121.74129 * 179.97438 * 24 23 22 26 26 C 1.36113 * 119.61111 * 179.16044 * 25 24 23 27 27 C 1.39372 * 121.13111 * 0.80793 * 26 25 24 28 28 C 1.36344 * 120.88610 * 359.47034 * 27 26 25 29 29 C 1.39859 * 119.49416 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47155 * 296.76354 * 1 2 3 31 31 H 1.08999 * 109.47210 * 56.75838 * 1 2 3 32 32 H 1.08995 * 109.47142 * 176.76144 * 1 2 3 33 33 H 1.08994 * 109.47051 * 183.23958 * 3 2 1 34 34 H 1.09001 * 109.46910 * 303.23720 * 3 2 1 35 35 H 1.08993 * 109.47194 * 63.23559 * 3 2 1 36 36 H 1.09007 * 109.88385 * 338.85873 * 4 2 1 37 37 H 1.09002 * 109.88796 * 100.02692 * 4 2 1 38 38 H 0.97004 * 119.99938 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.37151 * 265.31144 * 14 5 4 40 40 H 1.09000 * 110.41783 * 142.95482 * 14 5 4 41 41 H 0.96998 * 120.00298 * 269.58747 * 17 15 14 42 42 H 1.08003 * 119.82786 * 359.97438 * 21 20 18 43 43 H 1.08001 * 120.19165 * 359.97438 * 25 24 23 44 44 H 1.07999 * 119.43693 * 180.28101 * 26 25 24 45 45 H 1.08003 * 119.55922 * 179.44239 * 27 26 25 46 46 H 1.07994 * 120.25147 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0043 -2.3969 -1.5017 7 1 3.6503 -2.7145 -2.4713 8 6 5.2294 -2.8465 -1.0286 9 7 5.7448 -2.3242 0.0641 10 14 6.1467 -4.1928 -1.9428 11 1 6.9647 -3.5878 -3.0245 12 1 7.0339 -4.9171 -0.9975 13 1 5.1707 -5.1437 -2.5330 14 6 3.4636 -1.2498 0.6885 15 6 2.0790 -0.7954 1.2138 16 1 2.1843 -0.1519 2.0872 17 7 1.2271 -1.9487 1.5145 18 6 1.2505 -2.5016 2.7435 19 8 1.9781 -2.0431 3.6024 20 6 0.3863 -3.6619 3.0488 21 6 -0.5440 -4.1338 2.1306 22 7 -1.3077 -5.1762 2.4267 23 7 -1.2457 -5.8037 3.5450 24 6 -0.3933 -5.4452 4.5074 25 6 -0.3277 -6.1336 5.7314 26 6 0.5701 -5.7415 6.6763 27 6 1.4170 -4.6562 6.4591 28 6 1.3776 -3.9613 5.2867 29 6 0.4751 -4.3442 4.2893 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9700 -0.8596 35 1 1.7691 1.9344 0.9175 36 1 1.3129 -1.4759 -1.5775 37 1 2.3741 -0.1024 -1.9977 38 1 6.6011 -2.6381 0.3945 39 1 4.1933 -0.4477 0.7996 40 1 3.7962 -2.1423 1.2186 41 1 0.6462 -2.3145 0.8292 42 1 -0.6453 -3.6488 1.1710 43 1 -0.9768 -6.9770 5.9157 44 1 0.6212 -6.2752 7.6139 45 1 2.1136 -4.3613 7.2300 46 1 2.0389 -3.1222 5.1291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975089672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 55.747340 kcal Electronic energy + Delta-G solvation = -29973.850428 eV Core-core repulsion = 26057.074132 eV Total energy + Delta-G solvation = -3916.776296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67076 -41.17913 -39.52221 -38.90636 -35.75220 -35.06672 -34.47326 -32.74685 -32.66761 -31.47563 -29.88353 -28.17635 -27.50482 -26.91201 -25.48455 -25.11938 -23.87077 -22.51046 -21.78189 -20.29673 -19.68401 -19.35818 -18.74608 -18.65420 -17.37115 -16.85711 -16.70208 -16.54403 -16.25440 -16.01392 -15.77435 -15.50218 -15.32888 -14.95225 -14.68580 -14.56634 -14.16926 -13.76626 -13.62869 -13.55058 -13.46347 -13.22781 -13.01845 -12.89465 -12.81310 -12.65198 -12.61198 -12.17046 -12.09838 -11.89978 -11.84255 -11.77956 -11.60622 -11.55276 -11.36996 -10.73245 -10.60013 -10.48223 -10.17035 -9.48404 -8.83008 -7.90602 -5.25474 -1.47699 -0.51733 0.48317 1.41439 1.42996 1.45135 1.51071 1.80247 1.98277 2.45916 2.79247 2.81609 3.07673 3.24351 3.29348 3.30920 3.51174 3.65322 3.65832 3.87637 3.92948 4.04059 4.09013 4.17659 4.34759 4.37669 4.45319 4.45773 4.68637 4.71376 4.81888 4.86916 4.92967 4.93539 4.99414 5.07204 5.10261 5.17247 5.23245 5.25303 5.33343 5.36817 5.45402 5.52641 5.60734 5.65814 5.70273 6.17505 6.33517 6.98543 7.04951 7.34499 7.74662 8.41033 9.20834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.003875 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.704947 B = 7224.330859 C = 8340.371566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.135 3.865 5 N -0.616 5.616 6 C -0.239 4.239 7 H 0.081 0.919 8 C -0.061 4.061 9 N -0.947 5.947 10 Si 0.969 3.031 11 H -0.281 1.281 12 H -0.299 1.299 13 H -0.270 1.270 14 C 0.183 3.817 15 C 0.136 3.864 16 H 0.093 0.907 17 N -0.681 5.681 18 C 0.563 3.437 19 O -0.554 6.554 20 C -0.121 4.121 21 C 0.054 3.946 22 N -0.244 5.244 23 N -0.201 5.201 24 C 0.043 3.957 25 C -0.084 4.084 26 C -0.082 4.082 27 C -0.074 4.074 28 C -0.140 4.140 29 C -0.038 4.038 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.024 0.976 38 H 0.245 0.755 39 H 0.004 0.996 40 H 0.020 0.980 41 H 0.409 0.591 42 H 0.199 0.801 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.166 0.834 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 -0.802 11.108 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.185 4.185 4 C 0.010 3.990 5 N -0.343 5.343 6 C -0.368 4.368 7 H 0.099 0.901 8 C -0.255 4.255 9 N -0.596 5.596 10 Si 0.797 3.203 11 H -0.208 1.208 12 H -0.226 1.226 13 H -0.195 1.195 14 C 0.057 3.943 15 C 0.030 3.970 16 H 0.111 0.889 17 N -0.331 5.331 18 C 0.349 3.651 19 O -0.434 6.434 20 C -0.136 4.136 21 C -0.099 4.099 22 N -0.096 5.096 23 N -0.055 5.055 24 C -0.087 4.087 25 C -0.104 4.104 26 C -0.102 4.102 27 C -0.093 4.093 28 C -0.158 4.158 29 C -0.047 4.047 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.039 0.961 41 H 0.247 0.753 42 H 0.215 0.785 43 H 0.188 0.812 44 H 0.201 0.799 45 H 0.183 0.817 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.798 -1.513 11.123 19.380 hybrid contribution 2.247 0.207 -0.655 2.350 sum -13.551 -1.305 10.468 17.173 Atomic orbital electron populations 1.21730 0.90909 1.02472 1.03378 1.21820 0.97514 0.95443 0.92419 1.21698 1.00056 0.93522 1.03186 1.21696 0.88994 0.93113 0.95155 1.44673 1.32060 1.50790 1.06739 1.19350 0.98040 1.18991 1.00451 0.90096 1.25615 0.97865 1.02741 0.99252 1.70147 1.18868 1.45022 1.25521 0.85244 0.78383 0.79257 0.77380 1.20813 1.22597 1.19518 1.21379 0.91692 0.96646 0.84581 1.22346 0.90537 0.86344 0.97766 0.88900 1.45631 1.43295 1.32266 1.11885 1.17953 0.81772 0.82477 0.82904 1.90609 1.42263 1.63264 1.47228 1.21138 0.98778 0.97690 0.96001 1.24551 0.91182 0.93733 1.00426 1.72958 1.19670 1.05481 1.11494 1.73470 1.15216 1.20462 0.96348 1.20754 0.94870 0.95345 0.97721 1.21193 0.99834 0.99898 0.89507 1.21598 0.92585 0.95454 1.00581 1.21746 0.97585 0.93448 0.96529 1.21893 0.98394 1.02095 0.93466 1.18948 0.96632 0.94846 0.94301 0.91273 0.90234 0.92153 0.94787 0.90213 0.90943 0.94294 0.95761 0.94561 0.97780 0.96129 0.75317 0.78482 0.81195 0.79945 0.81688 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.07 71.98 0.58 -2.01 16 2 C -0.07 -2.07 0.80 -50.99 -0.04 -2.11 16 3 C -0.13 -3.43 8.41 71.98 0.61 -2.83 16 4 C 0.14 5.01 6.41 86.73 0.56 5.56 16 5 N -0.62 -30.29 3.40 -691.74 -2.35 -32.64 16 6 C -0.24 -13.17 10.22 84.03 0.86 -12.31 16 7 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 8 C -0.06 -3.49 5.39 84.86 0.46 -3.04 16 9 N -0.95 -58.13 10.79 21.65 0.23 -57.90 16 10 Si 0.97 46.31 29.56 68.60 2.03 48.34 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.18 8.98 4.77 86.84 0.41 9.40 16 15 C 0.14 4.85 2.61 46.38 0.12 4.97 16 16 H 0.09 3.35 7.53 -2.39 -0.02 3.34 16 17 N -0.68 -21.79 4.58 -438.80 -2.01 -23.80 16 18 C 0.56 19.43 7.76 86.79 0.67 20.11 16 19 O -0.55 -22.11 13.36 -3.87 -0.05 -22.16 16 20 C -0.12 -3.72 5.95 -19.66 -0.12 -3.84 16 21 C 0.05 1.45 10.80 84.75 0.92 2.37 16 22 N -0.24 -7.22 11.47 -56.68 -0.65 -7.87 16 23 N -0.20 -5.88 11.52 -51.99 -0.60 -6.47 16 24 C 0.04 1.16 6.69 40.38 0.27 1.43 16 25 C -0.08 -1.52 10.01 22.35 0.22 -1.29 16 26 C -0.08 -1.13 9.94 22.05 0.22 -0.91 16 27 C -0.07 -1.33 9.96 22.10 0.22 -1.11 16 28 C -0.14 -3.83 9.28 22.22 0.21 -3.63 16 29 C -0.04 -1.13 5.77 -21.08 -0.12 -1.25 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.13 6.42 -2.39 -0.02 1.12 16 33 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.33 7.77 -2.38 -0.02 1.32 16 37 H 0.02 0.93 7.84 -2.39 -0.02 0.91 16 38 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.00 0.24 7.67 -2.39 -0.02 0.22 16 40 H 0.02 1.18 7.13 -2.39 -0.02 1.17 16 41 H 0.41 11.10 5.22 -92.71 -0.48 10.61 16 42 H 0.20 4.05 6.56 -2.91 -0.02 4.03 16 43 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.15 4.85 5.14 -2.91 -0.01 4.83 16 Total: -1.00 -76.22 370.60 3.18 -73.04 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.54 Total: 19.96 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.04 Total: 9.50 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -5.37 Total: -128.68 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -76.22 3.18 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975089672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.788 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds