Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.91300 * 2 1 4 4 C 1.54910 * 111.00558 * 123.89992 * 2 1 3 5 5 N 1.47426 * 104.83209 * 155.08511 * 4 2 1 6 6 C 1.36932 * 125.64638 * 155.89300 * 5 4 2 7 7 H 1.08002 * 120.00173 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99942 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99835 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.47161 * 59.99794 * 10 8 6 12 12 H 1.48499 * 109.47029 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47246 * 299.99751 * 10 8 6 14 14 C 1.47019 * 108.70209 * 335.87354 * 5 4 2 15 15 C 1.54322 * 107.27223 * 1.05519 * 14 5 4 16 16 H 1.08999 * 110.72067 * 140.73669 * 15 14 5 17 17 N 1.46502 * 110.72217 * 263.83293 * 15 14 5 18 18 C 1.34771 * 119.99933 * 273.54400 * 17 15 14 19 19 O 1.21493 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.48373 * 120.00204 * 180.02562 * 18 17 15 21 21 C 1.40209 * 119.22324 * 179.73130 * 20 18 17 22 22 C 1.36643 * 119.90945 * 179.76211 * 21 20 18 23 23 C 1.40558 * 118.10463 * 0.49315 * 22 21 20 24 24 C 1.40399 * 122.05846 * 179.77084 * 23 22 21 25 25 N 1.31240 * 119.87857 * 179.97438 * 24 23 22 26 26 C 1.32605 * 122.67741 * 0.02562 * 25 24 23 27 27 C 1.36098 * 121.99711 * 359.97438 * 26 25 24 28 28 C 1.40947 * 118.76570 * 0.02562 * 27 26 25 29 29 N 1.31986 * 119.21932 * 0.02562 * 20 18 17 30 30 H 1.09001 * 109.46968 * 297.54821 * 1 2 3 31 31 H 1.09000 * 109.47530 * 57.55640 * 1 2 3 32 32 H 1.09008 * 109.47168 * 177.55678 * 1 2 3 33 33 H 1.08999 * 109.46945 * 182.44688 * 3 2 1 34 34 H 1.09000 * 109.46803 * 302.44274 * 3 2 1 35 35 H 1.08991 * 109.47274 * 62.44954 * 3 2 1 36 36 H 1.08998 * 110.36709 * 36.24612 * 4 2 1 37 37 H 1.09005 * 110.36466 * 273.92147 * 4 2 1 38 38 H 0.97001 * 119.99871 * 180.02562 * 9 8 6 39 39 H 1.09001 * 109.88389 * 120.48020 * 14 5 4 40 40 H 1.09004 * 109.87600 * 241.48978 * 14 5 4 41 41 H 0.97000 * 120.00060 * 93.54924 * 17 15 14 42 42 H 1.08001 * 120.04203 * 0.02562 * 21 20 18 43 43 H 1.08002 * 120.94637 * 180.24555 * 22 21 20 44 44 H 1.08004 * 120.06210 * 0.02562 * 24 23 22 45 45 H 1.08005 * 118.99925 * 180.02562 * 26 25 24 46 46 H 1.07997 * 120.61565 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 3.4272 -1.2430 0.7733 6 6 4.4641 -1.5663 1.6072 7 1 4.3332 -1.5118 2.6779 8 6 5.6835 -1.9640 1.0764 9 7 5.8429 -2.0308 -0.2284 10 14 7.0979 -2.4057 2.2139 11 1 6.6977 -3.5411 3.0835 12 1 8.2806 -2.7954 1.4049 13 1 7.4395 -1.2324 3.0576 14 6 3.4675 -1.2740 -0.6960 15 6 2.0861 -0.8080 -1.2022 16 1 2.1919 -0.1725 -2.0815 17 7 1.2268 -1.9575 -1.4961 18 6 1.2807 -2.5469 -2.7069 19 8 2.0421 -2.1253 -3.5545 20 6 0.4100 -3.7108 -3.0048 21 6 0.4753 -4.3080 -4.2717 22 6 -0.3167 -5.3836 -4.5595 23 6 -1.1881 -5.8505 -3.5604 24 6 -2.0414 -6.9459 -3.7681 25 7 -2.8377 -7.3463 -2.8048 26 6 -2.8791 -6.7557 -1.6182 27 6 -2.0925 -5.6868 -1.3169 28 6 -1.2091 -5.1963 -2.2995 29 7 -0.4119 -4.1559 -2.0729 30 1 -0.3633 0.4753 0.9112 31 1 -0.3634 0.5513 -0.8672 32 1 -0.3634 -1.0268 -0.0438 33 1 3.1649 1.4021 -0.0439 34 1 1.6908 1.9654 -0.8673 35 1 1.7619 1.9383 0.9110 36 1 1.4519 -1.6703 1.4025 37 1 2.1560 -0.1718 2.0837 38 1 6.6949 -2.3091 -0.5993 39 1 4.2426 -0.5997 -1.0599 40 1 3.6677 -2.2888 -1.0398 41 1 0.6191 -2.2944 -0.8193 42 1 1.1537 -3.9209 -5.0176 43 1 -0.2772 -5.8589 -5.5285 44 1 -2.0420 -7.4587 -4.7187 45 1 -3.5572 -7.1350 -0.8680 46 1 -2.1442 -5.2231 -0.3429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975098899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 40.070593 kcal Electronic energy + Delta-G solvation = -29512.756182 eV Core-core repulsion = 25595.300091 eV Total energy + Delta-G solvation = -3917.456091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39663 -41.25418 -39.75357 -38.64513 -35.78466 -34.96974 -34.39200 -32.77505 -32.62407 -31.49625 -29.90850 -28.16876 -27.49563 -26.82154 -25.41035 -24.90507 -23.74803 -22.63706 -21.65354 -20.49375 -19.61744 -19.15440 -18.70344 -18.31881 -17.33759 -17.12630 -16.76237 -16.35797 -15.94520 -15.75098 -15.61094 -15.49594 -15.33402 -15.32235 -14.78529 -14.42990 -14.11183 -14.02949 -13.77930 -13.69905 -13.47356 -13.32800 -13.16999 -13.00687 -12.87488 -12.66342 -12.60661 -12.19433 -11.88377 -11.81437 -11.78916 -11.55442 -11.49282 -11.35154 -10.95200 -10.75015 -10.54589 -10.49581 -10.06188 -9.58938 -8.90581 -7.84252 -5.21034 -1.08377 -0.54784 0.73017 1.31120 1.42803 1.46518 1.52908 1.92394 2.20978 2.48225 2.78089 2.98007 3.33582 3.36166 3.43790 3.45828 3.56501 3.59675 3.70233 3.78143 3.93314 4.01662 4.04824 4.26985 4.36369 4.48679 4.52658 4.62236 4.67443 4.75967 4.81839 4.85031 4.85960 4.92585 4.93305 5.01390 5.10455 5.15178 5.24816 5.27719 5.32088 5.43981 5.53501 5.53939 5.66089 5.71170 6.16365 6.25978 6.55785 6.84296 7.03540 7.08590 7.76384 8.41087 9.24842 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003150 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.648004 B = 8885.917089 C = 9484.679380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.240 4.240 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.278 1.278 12 H -0.298 1.298 13 H -0.273 1.273 14 C 0.195 3.805 15 C 0.133 3.867 16 H 0.086 0.914 17 N -0.679 5.679 18 C 0.557 3.443 19 O -0.561 6.561 20 C 0.128 3.872 21 C -0.149 4.149 22 C -0.009 4.009 23 C -0.166 4.166 24 C 0.172 3.828 25 N -0.503 5.503 26 C 0.094 3.906 27 C -0.150 4.150 28 C 0.129 3.871 29 N -0.467 5.467 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.051 0.949 38 H 0.244 0.756 39 H 0.012 0.988 40 H -0.002 1.002 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.203 0.797 44 H 0.210 0.790 45 H 0.188 0.812 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.151 -5.574 -7.059 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.179 4.179 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.369 4.369 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.204 1.204 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.068 3.932 15 C 0.028 3.972 16 H 0.104 0.896 17 N -0.330 5.330 18 C 0.341 3.659 19 O -0.439 6.439 20 C -0.026 4.026 21 C -0.170 4.170 22 C -0.037 4.037 23 C -0.171 4.171 24 C -0.001 4.001 25 N -0.210 5.210 26 C -0.049 4.049 27 C -0.170 4.170 28 C 0.001 3.999 29 N -0.179 5.179 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.016 0.984 41 H 0.252 0.748 42 H 0.176 0.824 43 H 0.220 0.780 44 H 0.226 0.774 45 H 0.205 0.795 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.101 -5.639 -6.730 22.855 hybrid contribution 2.004 -0.003 0.288 2.024 sum -19.097 -5.643 -6.443 20.930 Atomic orbital electron populations 1.21659 0.91105 1.02086 1.03376 1.21984 0.97081 0.95543 0.92868 1.21583 1.00032 0.93399 1.02929 1.21879 0.85482 0.95331 0.95993 1.44664 1.09207 1.78952 1.01766 1.19443 0.90220 1.37480 0.89758 0.89596 1.25681 1.00587 1.02524 0.97336 1.70221 1.24149 1.54692 1.11064 0.85151 0.78360 0.78300 0.77511 1.20402 1.22438 1.19915 1.21080 0.91752 0.96667 0.83678 1.22241 0.90221 0.86681 0.98096 0.89613 1.45819 1.41260 1.31699 1.14235 1.18371 0.82135 0.82674 0.82673 1.90763 1.40293 1.64819 1.48038 1.21417 0.93971 0.94975 0.92215 1.21958 1.01241 0.97355 0.96422 1.21943 0.89426 0.92204 1.00089 1.20241 1.01160 1.00102 0.95555 1.23891 0.87162 0.89992 0.99069 1.67612 1.21378 1.30290 1.01763 1.22704 0.96689 0.91393 0.94136 1.21977 0.96091 0.98674 1.00270 1.19326 0.94773 0.91783 0.94055 1.67776 1.05001 1.12503 1.32625 0.90089 0.91352 0.92675 0.94922 0.91039 0.90431 0.95881 0.93035 0.94708 0.96983 0.98381 0.74811 0.82442 0.78030 0.77353 0.79509 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.35 71.98 0.60 -2.39 16 2 C -0.07 -2.40 0.83 -50.79 -0.04 -2.45 16 3 C -0.12 -3.74 8.61 71.98 0.62 -3.12 16 4 C 0.14 5.50 6.14 86.86 0.53 6.03 16 5 N -0.62 -32.32 3.38 -691.98 -2.34 -34.66 16 6 C -0.24 -13.71 10.28 84.04 0.86 -12.85 16 7 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 8 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 9 N -0.95 -60.33 10.31 21.65 0.22 -60.10 16 10 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.19 10.28 4.73 86.73 0.41 10.69 16 15 C 0.13 5.32 2.51 46.18 0.12 5.44 16 16 H 0.09 3.50 7.60 -2.39 -0.02 3.48 16 17 N -0.68 -24.83 4.53 -439.29 -1.99 -26.82 16 18 C 0.56 20.95 7.81 86.94 0.68 21.63 16 19 O -0.56 -24.47 16.00 -3.69 -0.06 -24.53 16 20 C 0.13 3.93 6.75 42.30 0.29 4.21 16 21 C -0.15 -3.53 9.54 22.38 0.21 -3.31 16 22 C -0.01 -0.14 9.92 22.46 0.22 0.08 16 23 C -0.17 -3.07 5.75 -21.24 -0.12 -3.19 16 24 C 0.17 2.37 11.05 85.31 0.94 3.31 16 25 N -0.50 -8.56 10.30 -195.61 -2.02 -10.58 16 26 C 0.09 1.50 11.05 84.08 0.93 2.43 16 27 C -0.15 -2.91 10.08 22.44 0.23 -2.69 16 28 C 0.13 3.10 6.63 40.58 0.27 3.37 16 29 N -0.47 -13.49 9.50 -177.62 -1.69 -15.18 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.32 6.17 -2.38 -0.01 1.31 16 33 H 0.03 1.23 7.81 -2.39 -0.02 1.21 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 37 H 0.05 1.96 8.05 -2.38 -0.02 1.94 16 38 H 0.24 15.19 8.31 -92.71 -0.77 14.41 16 39 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 40 H 0.00 -0.12 7.40 -2.38 -0.02 -0.14 16 41 H 0.41 13.81 6.13 -92.71 -0.57 13.24 16 42 H 0.16 3.60 7.60 -2.91 -0.02 3.58 16 43 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 45 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -80.23 377.54 1.81 -78.42 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.44 Total: 20.55 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 7.21 Total: 23.64 kcal Atomic # 7 Polarization: -139.53 SS G_CDS: -7.81 Total: -147.34 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -80.23 1.81 -78.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975098899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.487 kcal (2) G-P(sol) polarization free energy of solvation -80.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds