Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.78297 * 2 1 4 4 C 1.54427 * 110.72279 * 236.70602 * 2 1 3 5 5 N 1.47024 * 107.28395 * 263.84634 * 4 2 1 6 6 C 1.36934 * 125.64876 * 181.09087 * 5 4 2 7 7 H 1.08006 * 119.99808 * 173.85265 * 6 5 4 8 8 C 1.38810 * 120.00222 * 353.85371 * 6 5 4 9 9 N 1.31621 * 119.99724 * 6.83076 * 8 6 5 10 10 Si 1.86800 * 120.00120 * 186.82168 * 8 6 5 11 11 H 1.48500 * 109.46645 * 94.98707 * 10 8 6 12 12 H 1.48493 * 109.47506 * 214.98765 * 10 8 6 13 13 H 1.48499 * 109.47125 * 334.99093 * 10 8 6 14 14 C 1.47427 * 108.69939 * 1.06332 * 5 4 2 15 15 C 1.54912 * 104.83238 * 335.86808 * 14 5 4 16 16 H 1.08997 * 111.00322 * 155.12392 * 15 14 5 17 17 N 1.46502 * 111.00086 * 278.93720 * 15 14 5 18 18 C 1.34773 * 120.00173 * 270.41428 * 17 15 14 19 19 O 1.21554 * 119.99636 * 0.02562 * 18 17 15 20 20 C 1.47856 * 120.00232 * 180.02562 * 18 17 15 21 21 C 1.40618 * 119.75407 * 0.03057 * 20 18 17 22 22 C 1.35729 * 120.83561 * 179.97438 * 21 20 18 23 23 C 1.40709 * 120.08438 * 0.04377 * 22 21 20 24 24 N 1.33800 * 120.85940 * 179.97438 * 23 22 21 25 25 C 1.31334 * 119.75798 * 179.64405 * 24 23 22 26 26 C 1.39744 * 120.71229 * 0.56680 * 25 24 23 27 27 N 1.31276 * 120.67759 * 359.44802 * 26 25 24 28 28 C 1.33827 * 119.73577 * 0.25440 * 27 26 25 29 29 C 1.38415 * 119.75936 * 179.97438 * 20 18 17 30 30 H 1.09004 * 109.46724 * 296.75921 * 1 2 3 31 31 H 1.08995 * 109.46902 * 56.75553 * 1 2 3 32 32 H 1.08994 * 109.47000 * 176.76272 * 1 2 3 33 33 H 1.09002 * 109.47395 * 183.24241 * 3 2 1 34 34 H 1.09001 * 109.47184 * 303.24410 * 3 2 1 35 35 H 1.08996 * 109.47227 * 63.24056 * 3 2 1 36 36 H 1.09001 * 109.87883 * 144.42470 * 4 2 1 37 37 H 1.09002 * 110.00656 * 23.34029 * 4 2 1 38 38 H 0.97008 * 119.99379 * 180.02562 * 9 8 6 39 39 H 1.08999 * 110.36172 * 217.02834 * 14 5 4 40 40 H 1.09000 * 110.37035 * 94.70949 * 14 5 4 41 41 H 0.96999 * 119.99505 * 90.42721 * 17 15 14 42 42 H 1.07993 * 119.58228 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.96407 * 180.02562 * 22 21 20 44 44 H 1.07998 * 119.63906 * 180.29185 * 25 24 23 45 45 H 1.08000 * 119.66305 * 179.71627 * 26 25 24 46 46 H 1.08006 * 120.24585 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0764 -0.7929 -1.2073 5 7 2.3717 -2.1546 -0.7381 6 6 2.8945 -3.1653 -1.4998 7 1 3.1684 -4.1028 -1.0386 8 6 3.0724 -2.9852 -2.8646 9 7 2.8664 -1.8026 -3.4046 10 14 3.6042 -4.4209 -3.9348 11 1 2.4063 -5.0616 -4.5344 12 1 4.4958 -3.9290 -5.0157 13 1 4.3333 -5.4134 -3.1050 14 6 2.0124 -2.2513 0.6884 15 6 2.0790 -0.7955 1.2137 16 1 1.4400 -0.6657 2.0872 17 7 3.4596 -0.4084 1.5144 18 6 3.9683 -0.6264 2.7432 19 8 3.2816 -1.1447 3.6020 20 6 5.3614 -0.2352 3.0468 21 6 6.1509 0.3646 2.0496 22 6 7.4322 0.7328 2.3045 23 6 7.9884 0.5157 3.5786 24 7 9.2498 0.8721 3.8466 25 6 9.7448 0.6657 5.0455 26 6 8.9717 0.0662 6.0434 27 7 7.7317 -0.2926 5.8050 28 6 7.2026 -0.0876 4.5930 29 6 5.8786 -0.4610 4.3107 30 1 -0.3633 0.4627 0.9177 31 1 -0.3633 0.5634 -0.8594 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1611 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7692 1.9343 0.9176 36 1 2.9874 -0.3227 -1.5778 37 1 1.3288 -0.8278 -1.9997 38 1 2.9904 -1.6769 -4.3585 39 1 2.7289 -2.8790 1.2183 40 1 1.0037 -2.6489 0.7995 41 1 4.0075 0.0050 0.8289 42 1 5.7325 0.5344 1.0686 43 1 8.0258 1.1928 1.5283 44 1 10.7618 0.9585 5.2611 45 1 9.3974 -0.0996 7.0220 46 1 5.2683 -0.9208 5.0740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977579205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = 41.071124 kcal Electronic energy + Delta-G solvation = -29386.930533 eV Core-core repulsion = 25469.517828 eV Total energy + Delta-G solvation = -3917.412705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50737 -41.35923 -39.68701 -38.04344 -35.89427 -35.67444 -34.51438 -32.97645 -32.05480 -31.71962 -29.49793 -28.10254 -27.60672 -26.71020 -25.64039 -25.05941 -23.50015 -22.63191 -21.74917 -20.39923 -19.64364 -19.29738 -18.84259 -18.21003 -17.54321 -17.18728 -16.54350 -16.35348 -15.94874 -15.77878 -15.69078 -15.44667 -15.30282 -15.00358 -14.87397 -14.50897 -14.31137 -13.79360 -13.66039 -13.59526 -13.24480 -13.02237 -12.97210 -12.88350 -12.85181 -12.83282 -12.75451 -12.62678 -12.48824 -12.03062 -11.85976 -11.74664 -11.62197 -11.19441 -11.10910 -10.69722 -10.23529 -10.19047 -10.02849 -9.74736 -8.83772 -7.85596 -5.18018 -1.04733 -0.66005 0.69358 1.25614 1.45066 1.46622 1.54718 1.98537 2.17221 2.48794 2.91852 2.95616 3.08704 3.16800 3.32604 3.49682 3.56495 3.68631 3.74513 3.85182 3.96507 3.97125 4.07100 4.12642 4.41576 4.41748 4.43557 4.61133 4.68871 4.72135 4.76957 4.87517 4.88098 4.91020 5.00568 5.01342 5.05052 5.13987 5.22690 5.32965 5.37704 5.46030 5.49451 5.53433 5.73920 5.81159 6.18134 6.20823 6.45605 6.64162 7.07531 7.12994 7.77813 8.43047 9.24214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003085 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.527087 B = 9072.850157 C =10187.557927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.090 4.090 3 C -0.123 4.123 4 C 0.199 3.801 5 N -0.618 5.618 6 C -0.242 4.242 7 H 0.070 0.930 8 C -0.053 4.053 9 N -0.940 5.940 10 Si 0.969 3.031 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.275 1.275 14 C 0.123 3.877 15 C 0.150 3.850 16 H 0.102 0.898 17 N -0.689 5.689 18 C 0.558 3.442 19 O -0.572 6.572 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.082 4.082 23 C 0.078 3.922 24 N -0.451 5.451 25 C 0.098 3.902 26 C 0.086 3.914 27 N -0.450 5.450 28 C 0.049 3.951 29 C -0.024 4.024 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.018 0.982 37 H 0.014 0.986 38 H 0.248 0.752 39 H 0.025 0.975 40 H 0.031 0.969 41 H 0.408 0.592 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.225 0.775 45 H 0.222 0.778 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 11.001 15.970 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 C -0.181 4.181 4 C 0.075 3.925 5 N -0.344 5.344 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.247 4.247 9 N -0.588 5.588 10 Si 0.798 3.202 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.200 1.200 14 C -0.004 4.004 15 C 0.044 3.956 16 H 0.120 0.880 17 N -0.339 5.339 18 C 0.345 3.655 19 O -0.452 6.452 20 C -0.122 4.122 21 C -0.093 4.093 22 C -0.101 4.101 23 C -0.045 4.045 24 N -0.165 5.165 25 C -0.078 4.078 26 C -0.091 4.091 27 N -0.164 5.164 28 C -0.073 4.073 29 C -0.045 4.045 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.246 0.754 42 H 0.171 0.829 43 H 0.183 0.817 44 H 0.241 0.759 45 H 0.239 0.761 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.143 10.574 16.149 21.805 hybrid contribution 0.318 -1.077 -1.278 1.701 sum 10.461 9.496 14.871 20.513 Atomic orbital electron populations 1.21654 0.92290 1.01496 1.02636 1.22122 0.97099 0.96138 0.93799 1.21649 1.00508 0.93298 1.02650 1.21094 0.96589 0.83034 0.91804 1.44645 1.74174 1.09585 1.06041 1.19297 1.34335 0.93611 0.89843 0.91218 1.25465 1.02538 0.99180 0.97547 1.70136 1.56256 1.21658 1.10797 0.85205 0.77286 0.79111 0.78593 1.21689 1.21776 1.20040 1.22040 0.97238 0.95782 0.85297 1.22064 0.82273 0.93795 0.97483 0.87998 1.45745 1.14600 1.61235 1.12356 1.18363 0.86704 0.78129 0.82255 1.90740 1.61577 1.45126 1.47800 1.19906 0.93991 1.03079 0.95232 1.21185 0.93786 0.95215 0.99089 1.20908 0.94863 0.99300 0.95052 1.19836 0.91562 0.97505 0.95582 1.68820 1.10247 1.15258 1.22154 1.25037 1.03119 0.91948 0.87729 1.24971 0.88958 0.92135 1.03005 1.68704 1.14243 1.14834 1.18606 1.19438 0.95504 1.00727 0.91587 1.21163 0.92678 0.94685 0.95979 0.90536 0.91713 0.94011 0.92770 0.91679 0.90907 0.96346 0.96816 0.94288 0.95706 0.95113 0.75383 0.82936 0.81709 0.75882 0.76130 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.41 71.98 0.61 -3.04 16 2 C -0.09 -3.00 0.81 -50.96 -0.04 -3.04 16 3 C -0.12 -3.26 8.08 71.98 0.58 -2.68 16 4 C 0.20 9.09 4.55 86.76 0.39 9.48 16 5 N -0.62 -30.96 3.39 -691.76 -2.35 -33.31 16 6 C -0.24 -13.52 10.26 84.03 0.86 -12.65 16 7 H 0.07 3.88 7.84 -2.91 -0.02 3.85 16 8 C -0.05 -2.98 5.48 84.86 0.47 -2.51 16 9 N -0.94 -54.19 10.36 21.65 0.22 -53.96 16 10 Si 0.97 45.58 29.56 68.60 2.03 47.61 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.12 5.28 6.62 86.86 0.57 5.85 16 15 C 0.15 5.18 2.61 46.38 0.12 5.30 16 16 H 0.10 3.39 7.53 -2.39 -0.02 3.37 16 17 N -0.69 -22.02 4.57 -438.81 -2.01 -24.02 16 18 C 0.56 18.43 7.77 86.79 0.67 19.11 16 19 O -0.57 -22.28 15.99 -3.89 -0.06 -22.34 16 20 C -0.12 -3.30 5.87 -20.11 -0.12 -3.42 16 21 C -0.07 -1.70 9.44 22.27 0.21 -1.49 16 22 C -0.08 -1.79 9.95 22.29 0.22 -1.57 16 23 C 0.08 1.84 6.59 40.32 0.27 2.11 16 24 N -0.45 -8.97 10.46 -187.89 -1.96 -10.93 16 25 C 0.10 1.15 11.21 85.13 0.95 2.10 16 26 C 0.09 1.08 11.21 85.14 0.95 2.04 16 27 N -0.45 -10.03 10.46 -188.13 -1.97 -12.00 16 28 C 0.05 1.27 6.58 40.25 0.27 1.53 16 29 C -0.02 -0.69 9.56 22.85 0.22 -0.47 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 33 H 0.05 1.39 6.42 -2.39 -0.02 1.37 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.02 0.92 7.17 -2.39 -0.02 0.90 16 37 H 0.01 0.72 7.07 -2.39 -0.02 0.70 16 38 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 39 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 1.32 7.80 -2.39 -0.02 1.30 16 41 H 0.41 12.08 5.01 -92.71 -0.46 11.61 16 42 H 0.15 3.10 6.35 -2.91 -0.02 3.08 16 43 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 45 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 46 H 0.14 4.21 7.61 -2.91 -0.02 4.19 16 Total: -1.00 -75.07 374.69 1.67 -73.40 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.55 Total: 18.90 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 7.21 Total: 16.65 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -8.06 Total: -134.22 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.07 1.67 -73.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977579205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.476 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds