Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 126.38812 * 2 1 4 4 N 1.33183 * 108.61917 * 180.02562 * 3 2 1 5 5 C 1.32653 * 109.12968 * 359.97438 * 4 3 2 6 6 C 1.40646 * 132.15905 * 180.02562 * 5 4 3 7 7 C 1.38434 * 119.09182 * 180.02562 * 6 5 4 8 8 C 1.47658 * 120.37145 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00162 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00098 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47464 * 180.02562 * 11 10 8 13 13 H 1.08996 * 115.49321 * 330.38401 * 12 11 10 14 14 C 1.53001 * 117.44599 * 185.00070 * 12 11 10 15 15 H 1.08995 * 120.26324 * 3.83186 * 14 12 11 16 16 C 1.54389 * 118.12236 * 160.81003 * 14 12 11 17 17 N 1.48141 * 104.61972 * 87.19259 * 16 14 12 18 18 C 1.36937 * 127.83847 * 140.41544 * 17 16 14 19 19 H 1.07999 * 120.00246 * 338.92854 * 18 17 16 20 20 C 1.38815 * 119.99944 * 158.93083 * 18 17 16 21 21 N 1.31622 * 120.00119 * 335.61650 * 20 18 17 22 22 Si 1.86801 * 119.99974 * 155.61203 * 20 18 17 23 23 H 1.48501 * 109.46843 * 90.00213 * 22 20 18 24 24 H 1.48498 * 109.47072 * 330.00315 * 22 20 18 25 25 H 1.48498 * 109.47087 * 209.99922 * 22 20 18 26 26 C 1.48145 * 104.32122 * 320.67503 * 17 16 14 27 27 C 1.53002 * 117.44384 * 115.76197 * 12 11 10 28 28 H 1.08998 * 119.53691 * 355.88217 * 27 12 11 29 29 C 1.41772 * 119.26020 * 0.24777 * 7 6 5 30 30 C 1.34545 * 120.14435 * 359.48622 * 29 7 6 31 31 N 1.36429 * 126.38934 * 180.02562 * 2 1 3 32 32 H 1.08989 * 109.47161 * 89.97552 * 1 2 3 33 33 H 1.08997 * 109.47211 * 209.98014 * 1 2 3 34 34 H 1.09000 * 109.47074 * 329.97680 * 1 2 3 35 35 H 1.07995 * 125.68944 * 0.02562 * 3 2 1 36 36 H 1.08003 * 120.44979 * 0.02562 * 6 5 4 37 37 H 0.96998 * 119.99540 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.46923 * 59.99891 * 11 10 8 39 39 H 1.09008 * 109.47747 * 300.00453 * 11 10 8 40 40 H 1.09000 * 110.40621 * 328.40695 * 16 14 12 41 41 H 1.09000 * 110.50656 * 206.03173 * 16 14 12 42 42 H 0.97006 * 119.99914 * 354.46921 * 21 20 18 43 43 H 1.09003 * 110.40893 * 158.10934 * 26 17 16 44 44 H 1.09003 * 110.41009 * 280.54046 * 26 17 16 45 45 H 1.07998 * 119.92884 * 179.72281 * 29 7 6 46 46 H 1.07998 * 119.52199 * 180.25456 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6840 -0.0006 5 6 3.6104 -0.6422 -0.0004 6 6 4.6751 -1.5612 -0.0003 7 6 4.3942 -2.9167 -0.0006 8 6 5.4902 -3.9062 -0.0011 9 8 6.6471 -3.5321 -0.0017 10 7 5.2082 -5.2241 -0.0009 11 6 6.2956 -6.2058 -0.0019 12 6 5.7075 -7.6183 -0.0021 13 1 4.7379 -7.7228 0.4847 14 6 6.6853 -8.7892 0.1152 15 1 7.7499 -8.6038 0.2575 16 6 6.1309 -10.1580 0.5655 17 7 5.6802 -10.8091 -0.6865 18 6 5.8064 -12.1257 -1.0411 19 1 6.5523 -12.7443 -0.5643 20 6 4.9755 -12.6653 -2.0134 21 7 3.8011 -12.1208 -2.2517 22 14 5.5242 -14.1642 -2.9839 23 1 5.0874 -15.3966 -2.2800 24 1 7.0043 -14.1612 -3.1045 25 1 4.9170 -14.1262 -4.3386 26 6 5.0678 -9.7114 -1.4705 27 6 5.9806 -8.4956 -1.2255 28 1 6.5171 -8.0779 -2.0773 29 6 3.0425 -3.3443 -0.0064 30 6 2.0474 -2.4388 -0.0010 31 7 2.3164 -1.0983 -0.0005 32 1 -0.3633 0.0004 -1.0276 33 1 -0.3633 -0.8901 0.5135 34 1 -0.3633 0.8898 0.5142 35 1 1.9783 2.1179 0.0004 36 1 5.6978 -1.2140 0.0000 37 1 4.2853 -5.5226 -0.0008 38 1 6.9104 -6.0679 0.8875 39 1 6.9089 -6.0679 -0.8925 40 1 5.2911 -10.0223 1.2470 41 1 6.9134 -10.7492 1.0411 42 1 3.4819 -11.3934 -1.6949 43 1 5.0507 -9.9650 -2.5305 44 1 4.0594 -9.5048 -1.1119 45 1 2.8111 -4.3992 -0.0112 46 1 1.0213 -2.7757 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978169907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = 111.539381 kcal Electronic energy + Delta-G solvation = -27689.229670 eV Core-core repulsion = 23774.872698 eV Total energy + Delta-G solvation = -3914.356972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.30115 -40.17464 -39.03427 -37.40652 -35.28577 -34.35797 -33.67400 -31.91524 -30.84606 -30.45554 -28.10469 -27.46588 -26.74856 -25.00207 -23.90275 -23.54015 -21.62847 -21.29043 -20.96055 -19.99133 -19.47918 -18.09448 -17.81895 -17.49912 -17.12052 -16.53406 -15.99132 -15.43905 -15.22119 -15.11209 -14.55947 -14.10310 -14.03574 -13.90492 -13.73447 -13.66446 -13.55160 -13.31111 -13.23239 -13.00497 -12.98497 -12.27382 -12.22670 -12.05947 -11.70257 -11.21205 -11.03802 -10.75098 -10.61191 -10.54582 -10.51726 -10.35315 -10.09535 -9.69708 -9.63945 -9.31293 -9.27228 -9.11770 -8.54279 -8.19188 -7.05125 -6.19676 -3.25064 0.05940 0.59329 2.06283 2.20774 2.61955 2.77939 3.28395 3.45666 3.50399 3.65503 3.76746 3.91339 4.00914 4.09779 4.26793 4.45621 4.50495 4.52707 4.68644 4.79521 4.92887 4.98862 5.04276 5.10640 5.12528 5.23389 5.28422 5.36314 5.38768 5.53091 5.57969 5.59263 5.72222 5.76988 5.78443 5.92865 5.93323 6.14438 6.15966 6.34365 6.46947 6.53771 6.54431 6.70634 6.90211 6.92978 7.23195 7.38592 7.69132 7.91894 8.38994 8.91116 9.72032 10.34764 11.16534 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.001844 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.132374 B =15178.462154 C =16129.769301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.060 4.060 3 C 0.034 3.966 4 N -0.475 5.475 5 C 0.205 3.795 6 C 0.003 3.997 7 C -0.125 4.125 8 C 0.563 3.437 9 O -0.533 6.533 10 N -0.715 5.715 11 C 0.155 3.845 12 C -0.147 4.147 13 H 0.104 0.896 14 C -0.160 4.160 15 H 0.108 0.892 16 C 0.153 3.847 17 N -0.598 5.598 18 C -0.330 4.330 19 H 0.065 0.935 20 C -0.026 4.026 21 N -0.919 5.919 22 Si 1.071 2.929 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.164 3.836 27 C -0.165 4.165 28 H 0.106 0.894 29 C -0.116 4.116 30 C 0.051 3.949 31 N -0.352 5.352 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.268 0.732 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.156 0.844 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 23.654 5.712 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.175 4.175 3 C -0.120 4.120 4 N -0.194 5.194 5 C -0.036 4.036 6 C -0.018 4.018 7 C -0.134 4.134 8 C 0.349 3.651 9 O -0.411 6.411 10 N -0.367 5.367 11 C 0.032 3.968 12 C -0.166 4.166 13 H 0.122 0.878 14 C -0.181 4.181 15 H 0.126 0.874 16 C 0.027 3.973 17 N -0.322 5.322 18 C -0.458 4.458 19 H 0.083 0.917 20 C -0.228 4.228 21 N -0.559 5.559 22 Si 0.900 3.100 23 H -0.221 1.221 24 H -0.218 1.218 25 H -0.211 1.211 26 C 0.038 3.962 27 C -0.185 4.185 28 H 0.124 0.876 29 C -0.137 4.137 30 C -0.070 4.070 31 N -0.025 5.025 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.201 0.799 36 H 0.184 0.816 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.173 0.827 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.047 23.170 4.419 24.351 hybrid contribution -0.765 0.344 1.300 1.547 sum -6.812 23.515 5.719 25.141 Atomic orbital electron populations 1.20226 0.86168 1.03742 1.03063 1.21403 0.94999 0.85216 1.15852 1.22412 0.87755 0.98822 1.02975 1.70684 1.21905 1.06068 1.20725 1.20701 0.83603 0.90961 1.08344 1.20699 0.98401 0.89404 0.93316 1.19910 0.93500 0.93498 1.06468 1.17836 0.88061 0.82256 0.76904 1.90820 1.20619 1.79975 1.49683 1.45879 1.10881 1.05298 1.74630 1.20918 0.88496 0.84879 1.02544 1.22518 1.00546 0.89976 1.03561 0.87831 1.23852 0.97247 0.94726 1.02246 0.87401 1.21155 0.96569 0.89634 0.89940 1.45290 1.69853 1.04307 1.12774 1.19755 1.16436 0.84785 1.24828 0.91748 1.25884 0.93243 1.03558 1.00074 1.70753 1.15796 1.26562 1.42789 0.83455 0.74984 0.74776 0.76778 1.22068 1.21823 1.21079 1.21039 0.92776 0.84914 0.97426 1.24055 1.03927 0.99428 0.91126 0.87588 1.20840 0.90788 1.00309 1.01740 1.21426 1.01466 0.80160 1.03961 1.42739 1.08903 1.05779 1.45086 0.90624 0.91517 0.89486 0.79935 0.81641 0.76266 0.90755 0.90942 0.95903 0.92836 0.92121 0.91533 0.95756 0.82673 0.81437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.30 36.01 0.37 0.08 16 2 C -0.06 -0.47 7.02 -81.54 -0.57 -1.04 16 3 C 0.03 0.30 11.75 -17.96 -0.21 0.09 16 4 N -0.47 -5.71 11.31 -12.80 -0.14 -5.86 16 5 C 0.20 2.33 7.79 -155.96 -1.22 1.11 16 6 C 0.00 0.03 9.70 -38.60 -0.37 -0.34 16 7 C -0.12 -1.24 5.90 -104.63 -0.62 -1.86 16 8 C 0.56 6.73 7.77 -12.42 -0.10 6.64 16 9 O -0.53 -8.28 16.36 5.29 0.09 -8.19 16 10 N -0.72 -7.46 5.51 -61.31 -0.34 -7.80 16 11 C 0.15 1.87 5.95 -4.05 -0.02 1.85 16 12 C -0.15 -2.02 5.40 -90.62 -0.49 -2.50 16 13 H 0.10 1.38 8.04 -51.93 -0.42 0.96 16 14 C -0.16 -2.65 6.85 -89.22 -0.61 -3.27 16 15 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 16 C 0.15 3.11 7.04 -2.41 -0.02 3.09 16 17 N -0.60 -14.91 3.23 -169.11 -0.55 -15.45 16 18 C -0.33 -9.23 10.19 -15.06 -0.15 -9.38 16 19 H 0.06 1.79 7.94 -52.49 -0.42 1.37 16 20 C -0.03 -0.74 5.12 -17.43 -0.09 -0.82 16 21 N -0.92 -27.26 12.82 55.49 0.71 -26.55 16 22 Si 1.07 25.02 29.98 -169.99 -5.10 19.92 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.16 3.66 4.98 -2.62 -0.01 3.65 16 27 C -0.17 -2.86 6.72 -89.43 -0.60 -3.47 16 28 H 0.11 1.75 8.12 -51.93 -0.42 1.33 16 29 C -0.12 -0.82 9.48 -39.54 -0.37 -1.19 16 30 C 0.05 0.34 10.80 -16.67 -0.18 0.16 16 31 N -0.35 -3.21 2.94 -58.54 -0.17 -3.39 16 32 H 0.08 0.25 8.14 -51.94 -0.42 -0.18 16 33 H 0.07 0.21 8.12 -51.93 -0.42 -0.21 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.17 1.82 7.67 -52.48 -0.40 1.42 16 37 H 0.40 3.18 6.47 -40.82 -0.26 2.92 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.94 7.94 -51.92 -0.41 0.53 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.27 7.92 6.41 -40.82 -0.26 7.66 16 43 H 0.07 1.66 7.47 -51.93 -0.39 1.27 16 44 H 0.02 0.55 7.66 -51.93 -0.40 0.15 16 45 H 0.16 0.67 6.46 -52.49 -0.34 0.33 16 46 H 0.17 0.57 8.04 -52.49 -0.42 0.15 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -35.61 383.49 -11.31 -46.91 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.32 Total: 1.82 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -5.27 Total: -7.20 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.49 Total: -59.04 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.61 -11.31 -46.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978169907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.454 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds