Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35451 * 126.38812 * 2 1 4 4 N 1.33183 * 108.61917 * 180.02562 * 3 2 1 5 5 C 1.32653 * 109.12968 * 359.97438 * 4 3 2 6 6 C 1.40646 * 132.15905 * 180.02562 * 5 4 3 7 7 C 1.38434 * 119.09182 * 180.02562 * 6 5 4 8 8 C 1.47658 * 120.37145 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00162 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00098 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47464 * 180.02562 * 11 10 8 13 13 H 1.08996 * 115.49321 * 330.38401 * 12 11 10 14 14 C 1.53001 * 117.44599 * 185.00070 * 12 11 10 15 15 H 1.08995 * 120.26324 * 3.83186 * 14 12 11 16 16 C 1.54389 * 118.12236 * 160.81003 * 14 12 11 17 17 N 1.48141 * 104.61972 * 87.19259 * 16 14 12 18 18 C 1.36937 * 127.83847 * 140.41544 * 17 16 14 19 19 H 1.07999 * 120.00246 * 338.92854 * 18 17 16 20 20 C 1.38815 * 119.99944 * 158.93083 * 18 17 16 21 21 N 1.31622 * 120.00119 * 335.61650 * 20 18 17 22 22 Si 1.86801 * 119.99974 * 155.61203 * 20 18 17 23 23 H 1.48501 * 109.46843 * 90.00213 * 22 20 18 24 24 H 1.48498 * 109.47072 * 330.00315 * 22 20 18 25 25 H 1.48498 * 109.47087 * 209.99922 * 22 20 18 26 26 C 1.48145 * 104.32122 * 320.67503 * 17 16 14 27 27 C 1.53002 * 117.44384 * 115.76197 * 12 11 10 28 28 H 1.08998 * 119.53691 * 355.88217 * 27 12 11 29 29 C 1.41772 * 119.26020 * 0.24777 * 7 6 5 30 30 C 1.34545 * 120.14435 * 359.48622 * 29 7 6 31 31 N 1.36429 * 126.38934 * 180.02562 * 2 1 3 32 32 H 1.08989 * 109.47161 * 89.97552 * 1 2 3 33 33 H 1.08997 * 109.47211 * 209.98014 * 1 2 3 34 34 H 1.09000 * 109.47074 * 329.97680 * 1 2 3 35 35 H 1.07995 * 125.68944 * 0.02562 * 3 2 1 36 36 H 1.08003 * 120.44979 * 0.02562 * 6 5 4 37 37 H 0.96998 * 119.99540 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.46923 * 59.99891 * 11 10 8 39 39 H 1.09008 * 109.47747 * 300.00453 * 11 10 8 40 40 H 1.09000 * 110.40621 * 328.40695 * 16 14 12 41 41 H 1.09000 * 110.50656 * 206.03173 * 16 14 12 42 42 H 0.97006 * 119.99914 * 354.46921 * 21 20 18 43 43 H 1.09003 * 110.40893 * 158.10934 * 26 17 16 44 44 H 1.09003 * 110.41009 * 280.54046 * 26 17 16 45 45 H 1.07998 * 119.92884 * 179.72281 * 29 7 6 46 46 H 1.07998 * 119.52199 * 180.25456 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6840 -0.0006 5 6 3.6104 -0.6422 -0.0004 6 6 4.6751 -1.5612 -0.0003 7 6 4.3942 -2.9167 -0.0006 8 6 5.4902 -3.9062 -0.0011 9 8 6.6471 -3.5321 -0.0017 10 7 5.2082 -5.2241 -0.0009 11 6 6.2956 -6.2058 -0.0019 12 6 5.7075 -7.6183 -0.0021 13 1 4.7379 -7.7228 0.4847 14 6 6.6853 -8.7892 0.1152 15 1 7.7499 -8.6038 0.2575 16 6 6.1309 -10.1580 0.5655 17 7 5.6802 -10.8091 -0.6865 18 6 5.8064 -12.1257 -1.0411 19 1 6.5523 -12.7443 -0.5643 20 6 4.9755 -12.6653 -2.0134 21 7 3.8011 -12.1208 -2.2517 22 14 5.5242 -14.1642 -2.9839 23 1 5.0874 -15.3966 -2.2800 24 1 7.0043 -14.1612 -3.1045 25 1 4.9170 -14.1262 -4.3386 26 6 5.0678 -9.7114 -1.4705 27 6 5.9806 -8.4956 -1.2255 28 1 6.5171 -8.0779 -2.0773 29 6 3.0425 -3.3443 -0.0064 30 6 2.0474 -2.4388 -0.0010 31 7 2.3164 -1.0983 -0.0005 32 1 -0.3633 0.0004 -1.0276 33 1 -0.3633 -0.8901 0.5135 34 1 -0.3633 0.8898 0.5142 35 1 1.9783 2.1179 0.0004 36 1 5.6978 -1.2140 0.0000 37 1 4.2853 -5.5226 -0.0008 38 1 6.9104 -6.0679 0.8875 39 1 6.9089 -6.0679 -0.8925 40 1 5.2911 -10.0223 1.2470 41 1 6.9134 -10.7492 1.0411 42 1 3.4819 -11.3934 -1.6949 43 1 5.0507 -9.9650 -2.5305 44 1 4.0594 -9.5048 -1.1119 45 1 2.8111 -4.3992 -0.0112 46 1 1.0213 -2.7757 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978169907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = 89.794931 kcal Electronic energy + Delta-G solvation = -27690.172580 eV Core-core repulsion = 23774.872698 eV Total energy + Delta-G solvation = -3915.299882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.94532 -41.19084 -40.42620 -38.10999 -36.60049 -35.25484 -35.02915 -32.84335 -32.24602 -31.10240 -29.35342 -28.95480 -27.71173 -26.51554 -24.72621 -24.29480 -22.88366 -22.24125 -22.00278 -21.24195 -20.94367 -19.52089 -18.93565 -18.50443 -17.80514 -17.19172 -16.89483 -16.62170 -16.42466 -15.84114 -15.77267 -15.68948 -15.32536 -15.13640 -14.77741 -14.60453 -14.52644 -14.31058 -14.17754 -13.86551 -13.56514 -13.37838 -13.33822 -12.89045 -12.87747 -12.60196 -12.52210 -12.34690 -12.14263 -11.93009 -11.90489 -11.60321 -11.40823 -11.21948 -10.96842 -10.71310 -10.57984 -10.18066 -9.93534 -9.07126 -8.82260 -8.38337 -5.39826 -0.66877 -0.01595 1.48432 1.51307 1.56902 1.65474 1.82812 1.85727 1.87697 2.51333 2.60089 2.62535 3.11635 3.17970 3.37915 3.49673 3.51803 3.53711 3.66147 3.72149 3.90260 4.03897 4.07599 4.18637 4.27320 4.32987 4.33349 4.38531 4.48563 4.59531 4.67208 4.73808 4.77803 4.78188 4.89233 4.90162 5.00749 5.03469 5.08416 5.10405 5.25567 5.30176 5.33874 5.37181 5.54774 5.63737 5.96108 6.27687 6.38874 6.72254 6.83157 7.03571 7.63915 8.31839 8.98198 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.001844 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.132374 B =15178.462154 C =16129.769301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.050 4.050 3 C 0.013 3.987 4 N -0.515 5.515 5 C 0.177 3.823 6 C -0.018 4.018 7 C -0.123 4.123 8 C 0.564 3.436 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.162 3.838 12 C -0.100 4.100 13 H 0.117 0.883 14 C -0.157 4.157 15 H 0.128 0.872 16 C 0.147 3.853 17 N -0.626 5.626 18 C -0.340 4.340 19 H 0.059 0.941 20 C -0.079 4.079 21 N -0.946 5.946 22 Si 1.120 2.880 23 H -0.280 1.280 24 H -0.277 1.277 25 H -0.289 1.289 26 C 0.170 3.830 27 C -0.175 4.175 28 H 0.115 0.885 29 C -0.119 4.119 30 C 0.057 3.943 31 N -0.357 5.357 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.208 0.792 36 H 0.150 0.850 37 H 0.417 0.583 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.052 0.948 42 H 0.256 0.744 43 H 0.029 0.971 44 H 0.018 0.982 45 H 0.187 0.813 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 24.153 6.326 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.165 4.165 3 C -0.139 4.139 4 N -0.235 5.235 5 C -0.064 4.064 6 C -0.039 4.039 7 C -0.132 4.132 8 C 0.352 3.648 9 O -0.455 6.455 10 N -0.355 5.355 11 C 0.038 3.962 12 C -0.119 4.119 13 H 0.135 0.865 14 C -0.177 4.177 15 H 0.145 0.855 16 C 0.023 3.977 17 N -0.352 5.352 18 C -0.469 4.469 19 H 0.077 0.923 20 C -0.275 4.275 21 N -0.588 5.588 22 Si 0.944 3.056 23 H -0.206 1.206 24 H -0.203 1.203 25 H -0.215 1.215 26 C 0.044 3.956 27 C -0.195 4.195 28 H 0.133 0.867 29 C -0.139 4.139 30 C -0.063 4.063 31 N -0.030 5.030 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.225 0.775 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.204 0.796 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.671 23.679 5.067 25.401 hybrid contribution -0.317 0.261 1.175 1.245 sum -7.988 23.939 6.242 25.997 Atomic orbital electron populations 1.20406 0.83016 1.05323 1.04210 1.22092 0.96644 0.84391 1.13393 1.22992 0.87070 1.00614 1.03236 1.70611 1.23952 1.06960 1.22001 1.20692 0.84740 0.91002 1.09931 1.20607 0.97961 0.90228 0.95149 1.19818 0.94361 0.92406 1.06616 1.18090 0.87910 0.82745 0.76020 1.90802 1.22428 1.80642 1.51657 1.45705 1.11383 1.04546 1.73858 1.20764 0.88780 0.83902 1.02748 1.22417 1.00208 0.89771 0.99539 0.86491 1.23756 0.98766 0.94064 1.01127 0.85455 1.21289 0.96638 0.91346 0.88464 1.45591 1.70250 1.04160 1.15186 1.20017 1.15750 0.86426 1.24684 0.92347 1.27254 0.92929 1.06062 1.01217 1.70862 1.17087 1.27370 1.43480 0.82797 0.75333 0.72228 0.75235 1.20627 1.20260 1.21452 1.20884 0.93451 0.86369 0.94866 1.23813 1.03729 0.99412 0.92544 0.86665 1.21141 0.89219 1.02017 1.01529 1.22132 1.03303 0.78995 1.01866 1.42984 1.08236 1.07005 1.44784 0.89502 0.90097 0.87780 0.77542 0.83274 0.74497 0.90045 0.91424 0.95473 0.92996 0.93436 0.95268 0.96450 0.79566 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.30 71.24 0.73 0.44 16 2 C -0.05 -0.68 7.02 41.20 0.29 -0.39 16 3 C 0.01 0.23 11.75 83.84 0.99 1.21 16 4 N -0.51 -12.75 11.31 -194.41 -2.20 -14.95 16 5 C 0.18 4.08 7.79 133.97 1.04 5.12 16 6 C -0.02 -0.41 9.70 22.90 0.22 -0.19 16 7 C -0.12 -2.34 5.90 -19.87 -0.12 -2.46 16 8 C 0.56 12.91 7.77 86.73 0.67 13.58 16 9 O -0.57 -17.89 16.36 -3.99 -0.07 -17.96 16 10 N -0.70 -12.84 5.51 -466.15 -2.57 -15.40 16 11 C 0.16 3.46 5.95 86.38 0.51 3.98 16 12 C -0.10 -2.46 5.40 -10.79 -0.06 -2.52 16 13 H 0.12 2.67 8.04 -2.39 -0.02 2.65 16 14 C -0.16 -4.86 6.85 -9.89 -0.07 -4.93 16 15 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 16 C 0.15 5.86 7.04 86.54 0.61 6.47 16 17 N -0.63 -31.52 3.23 -688.94 -2.22 -33.75 16 18 C -0.34 -19.27 10.19 84.03 0.86 -18.42 16 19 H 0.06 3.29 7.94 -2.91 -0.02 3.26 16 20 C -0.08 -4.50 5.12 84.86 0.43 -4.07 16 21 N -0.95 -57.36 12.82 21.65 0.28 -57.08 16 22 Si 1.12 50.79 29.98 68.60 2.06 52.85 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.17 7.65 4.98 86.40 0.43 8.08 16 27 C -0.18 -5.83 6.72 -10.03 -0.07 -5.89 16 28 H 0.12 3.65 8.12 -2.39 -0.02 3.63 16 29 C -0.12 -1.34 9.48 22.30 0.21 -1.13 16 30 C 0.06 0.59 10.80 83.08 0.90 1.49 16 31 N -0.36 -5.89 2.94 -339.13 -1.00 -6.89 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.08 0.15 8.12 -2.39 -0.02 0.13 16 34 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.15 3.70 7.67 -2.91 -0.02 3.67 16 37 H 0.42 5.09 6.47 -92.71 -0.60 4.49 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 1.60 7.94 -2.38 -0.02 1.58 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.26 15.59 6.41 -92.70 -0.59 15.00 16 43 H 0.03 1.50 7.47 -2.39 -0.02 1.48 16 44 H 0.02 0.80 7.66 -2.39 -0.02 0.79 16 45 H 0.19 0.81 6.46 -2.91 -0.02 0.79 16 46 H 0.21 0.34 8.04 -2.91 -0.02 0.31 16 Total: -1.00 -81.62 383.49 2.46 -79.16 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.59 Total: 13.65 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 7.59 Total: 0.37 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -7.71 Total: -128.07 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.07 Total: -17.96 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.85 kcal Total: -81.62 2.46 -79.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978169907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.954 kcal (2) G-P(sol) polarization free energy of solvation -81.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds