Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40156 * 120.29518 * 2 1 4 4 C 1.35183 * 120.31929 * 180.31862 * 3 2 1 5 5 N 1.36242 * 120.70512 * 359.65597 * 4 3 2 6 6 N 1.40015 * 132.01167 * 180.02562 * 5 4 3 7 7 C 1.30742 * 109.60518 * 179.97438 * 6 5 4 8 8 C 1.40554 * 108.74098 * 359.97438 * 7 6 5 9 9 C 1.46569 * 126.57943 * 180.02562 * 8 7 6 10 10 O 1.21714 * 120.00410 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99824 * 359.96699 * 9 8 7 12 12 C 1.46498 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46983 * 179.97438 * 12 11 9 14 14 H 1.08995 * 115.51548 * 29.58720 * 13 12 11 15 15 C 1.53002 * 117.44133 * 244.23638 * 13 12 11 16 16 H 1.08993 * 119.53915 * 4.12431 * 15 13 12 17 17 C 1.57691 * 116.10604 * 161.63908 * 15 13 12 18 18 N 1.48144 * 104.67361 * 87.31233 * 17 15 13 19 19 C 1.36936 * 127.83853 * 139.77338 * 18 17 15 20 20 H 1.07997 * 120.00240 * 344.33039 * 19 18 17 21 21 C 1.38814 * 120.00425 * 164.33573 * 19 18 17 22 22 N 1.31623 * 119.99392 * 350.56597 * 21 19 18 23 23 Si 1.86796 * 120.00506 * 170.56521 * 21 19 18 24 24 H 1.48505 * 109.46972 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47009 * 120.00027 * 23 21 19 26 26 H 1.48497 * 109.47571 * 240.00159 * 23 21 19 27 27 C 1.48143 * 104.32258 * 319.77050 * 18 17 15 28 28 C 1.53003 * 117.44272 * 174.99770 * 13 12 11 29 29 H 1.09003 * 119.53669 * 355.88506 * 28 13 12 30 30 C 1.36571 * 120.08301 * 0.02562 * 5 4 3 31 31 C 1.36449 * 120.29402 * 179.66754 * 2 1 3 32 32 H 1.09000 * 109.47262 * 270.33468 * 1 2 3 33 33 H 1.08997 * 109.47044 * 30.32953 * 1 2 3 34 34 H 1.09000 * 109.47123 * 150.33172 * 1 2 3 35 35 H 1.08000 * 119.84314 * 359.97344 * 3 2 1 36 36 H 1.08004 * 119.64936 * 179.64226 * 4 3 2 37 37 H 1.08001 * 125.62881 * 179.97438 * 7 6 5 38 38 H 0.96994 * 119.99964 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46978 * 299.99789 * 12 11 9 40 40 H 1.09001 * 109.47299 * 59.99723 * 12 11 9 41 41 H 1.08998 * 110.92404 * 328.23307 * 17 15 13 42 42 H 1.09001 * 109.93526 * 205.88978 * 17 15 13 43 43 H 0.97003 * 119.99471 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.40661 * 280.79983 * 27 18 17 45 45 H 1.09005 * 110.40592 * 158.37105 * 27 18 17 46 46 H 1.07994 * 120.37206 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5658 1.2107 -0.0065 5 7 4.2620 0.0396 -0.0061 6 7 5.6351 -0.2343 -0.0113 7 6 5.8244 -1.5279 -0.0078 8 6 4.5728 -2.1674 0.0006 9 6 4.3305 -3.6130 0.0074 10 8 3.1904 -4.0390 0.0149 11 7 5.3703 -4.4705 0.0051 12 6 5.1282 -5.9153 0.0124 13 6 6.4666 -6.6567 0.0073 14 1 7.2947 -6.1340 0.4859 15 6 6.7900 -7.5196 -1.2140 16 1 6.1048 -7.5297 -2.0616 17 6 8.3073 -7.9006 -1.4124 18 7 8.4899 -9.1391 -0.6203 19 6 9.2189 -10.2494 -0.9533 20 1 9.5345 -10.4018 -1.9749 21 6 9.5522 -11.1793 0.0220 22 7 9.3329 -10.9088 1.2913 23 14 10.3118 -12.8143 -0.4669 24 1 10.4543 -12.8719 -1.9440 25 1 11.6494 -12.9471 0.1645 26 1 9.4364 -13.9233 -0.0099 27 6 7.7050 -8.9039 0.6139 28 6 6.4287 -8.1812 0.1321 29 1 5.4741 -8.6841 0.2873 30 6 3.5961 -1.1527 0.0004 31 6 2.1953 -1.1781 0.0068 32 1 -0.3634 0.0060 1.0276 33 1 -0.3633 0.8870 -0.5189 34 1 -0.3633 -0.8929 -0.5087 35 1 1.6763 2.1468 -0.0004 36 1 4.0997 2.1496 -0.0123 37 1 6.7841 -2.0234 -0.0108 38 1 6.2789 -4.1311 -0.0014 39 1 4.5664 -6.1851 0.9068 40 1 4.5564 -6.1924 -0.8732 41 1 8.9590 -7.1109 -1.0386 42 1 8.5080 -8.0908 -2.4667 43 1 9.5661 -11.5584 1.9729 44 1 8.2627 -8.2708 1.3041 45 1 7.4492 -9.8515 1.0881 46 1 1.6662 -2.1196 0.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978318717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 103.327487 kcal Electronic energy + Delta-G solvation = -27692.595724 eV Core-core repulsion = 23777.882658 eV Total energy + Delta-G solvation = -3914.713066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.21367 -40.68908 -39.90077 -38.59877 -36.28159 -34.95845 -34.56432 -32.71932 -32.40208 -30.67846 -29.02000 -28.67886 -27.96823 -26.52322 -24.70566 -23.62861 -22.99963 -22.61016 -21.78358 -20.93099 -20.75431 -19.01007 -18.77868 -17.82579 -17.49172 -16.95512 -16.92111 -16.69494 -16.13259 -16.02486 -15.82043 -15.67274 -15.20806 -14.93305 -14.58764 -14.42180 -14.35207 -14.32237 -14.07558 -13.51592 -13.34298 -13.17149 -12.95646 -12.86271 -12.73200 -12.72166 -12.48898 -12.26287 -11.97058 -11.93212 -11.85824 -11.74718 -11.40424 -11.09354 -10.89324 -10.68617 -10.52978 -10.36060 -10.01700 -8.89733 -8.72186 -7.91582 -5.27409 -0.41078 -0.03102 1.06693 1.11470 1.46435 1.47396 1.58264 2.13086 2.21673 2.47966 2.55369 2.79446 3.17206 3.27261 3.45923 3.64997 3.67283 3.73232 3.81697 3.89004 4.03990 4.04477 4.20082 4.29763 4.30564 4.37952 4.45328 4.54035 4.60758 4.71316 4.77946 4.78568 4.83355 4.92245 4.94960 5.03487 5.11864 5.24928 5.27991 5.34544 5.36571 5.46045 5.46117 5.53285 5.54714 5.67822 5.75341 6.18721 6.34050 6.65537 7.01811 7.32384 7.69112 8.47739 9.22514 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.001747 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.883075 B =16024.883609 C =16512.527891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.021 4.021 3 C -0.144 4.144 4 C 0.102 3.898 5 N -0.276 5.276 6 N -0.344 5.344 7 C 0.129 3.871 8 C -0.351 4.351 9 C 0.598 3.402 10 O -0.594 6.594 11 N -0.712 5.712 12 C 0.168 3.832 13 C -0.112 4.112 14 H 0.110 0.890 15 C -0.158 4.158 16 H 0.128 0.872 17 C 0.149 3.851 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.064 4.064 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.190 3.810 28 C -0.178 4.178 29 H 0.111 0.889 30 C 0.154 3.846 31 C -0.150 4.150 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.227 0.773 38 H 0.412 0.588 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.003 0.997 45 H 0.051 0.949 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 29.923 -2.888 34.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.165 4.165 4 C -0.023 4.023 5 N -0.040 5.040 6 N -0.165 5.165 7 C -0.051 4.051 8 C -0.365 4.365 9 C 0.388 3.612 10 O -0.477 6.477 11 N -0.363 5.363 12 C 0.044 3.956 13 C -0.131 4.131 14 H 0.128 0.872 15 C -0.177 4.177 16 H 0.146 0.854 17 C 0.024 3.976 18 N -0.345 5.345 19 C -0.368 4.368 20 H 0.098 0.902 21 C -0.258 4.258 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.189 1.189 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.064 3.936 28 C -0.198 4.198 29 H 0.129 0.871 30 C 0.033 3.967 31 C -0.170 4.170 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.221 0.779 36 H 0.221 0.779 37 H 0.244 0.756 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.069 0.931 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.096 30.497 -2.834 35.077 hybrid contribution 0.831 -2.108 0.179 2.273 sum -16.265 28.389 -2.655 32.826 Atomic orbital electron populations 1.20987 0.87220 1.04920 1.04346 1.20544 0.99006 0.91645 0.91494 1.21422 0.91302 1.00720 1.03053 1.22409 0.93006 0.88419 0.98500 1.46323 1.06178 1.05969 1.45505 1.77512 0.88829 1.17461 1.32656 1.24526 0.99289 0.90137 0.91164 1.19642 0.92702 0.92703 1.31469 1.17057 0.84243 0.84931 0.74956 1.90723 1.23323 1.79826 1.53864 1.45568 1.09531 1.05848 1.75393 1.20630 0.94391 0.78678 1.01883 1.22430 0.98120 0.91653 1.00918 0.87164 1.24640 0.97542 1.03718 0.91845 0.85413 1.21876 0.92232 0.87969 0.95516 1.45469 1.55846 1.14200 1.18959 1.19416 1.26213 0.97402 0.93755 0.90162 1.25744 1.01761 1.03128 0.95134 1.70107 1.54027 1.35689 0.99708 0.85001 0.77139 0.79102 0.78000 1.18872 1.21801 1.21832 1.20802 0.87771 0.96851 0.88167 1.23865 0.99830 0.93465 1.02685 0.87147 1.19541 0.93730 0.86238 0.97225 1.20752 0.89625 1.01022 1.05580 0.88858 0.87977 0.91012 0.77866 0.77900 0.75638 0.75109 0.91581 0.91562 0.94969 0.92712 0.94151 0.97894 0.93074 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.03 71.24 0.71 0.11 16 2 C -0.02 -0.24 5.89 -19.82 -0.12 -0.35 16 3 C -0.14 -0.92 9.67 22.03 0.21 -0.71 16 4 C 0.10 1.09 11.17 83.30 0.93 2.02 16 5 N -0.28 -5.48 3.86 -187.28 -0.72 -6.20 16 6 N -0.34 -7.53 12.57 -56.62 -0.71 -8.24 16 7 C 0.13 2.61 11.44 85.42 0.98 3.58 16 8 C -0.35 -8.74 6.17 -19.90 -0.12 -8.86 16 9 C 0.60 16.91 7.78 86.42 0.67 17.58 16 10 O -0.59 -20.73 15.71 -4.39 -0.07 -20.80 16 11 N -0.71 -16.97 5.55 -467.15 -2.59 -19.56 16 12 C 0.17 4.47 5.95 86.38 0.51 4.99 16 13 C -0.11 -3.29 5.34 -10.79 -0.06 -3.35 16 14 H 0.11 3.14 8.04 -2.39 -0.02 3.12 16 15 C -0.16 -5.30 7.03 -8.70 -0.06 -5.36 16 16 H 0.13 3.82 8.12 -2.39 -0.02 3.81 16 17 C 0.15 6.10 7.09 87.72 0.62 6.73 16 18 N -0.62 -32.31 3.38 -681.45 -2.30 -34.62 16 19 C -0.24 -13.54 10.35 84.03 0.87 -12.67 16 20 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 21 C -0.06 -3.68 5.39 84.86 0.46 -3.22 16 22 N -0.95 -57.53 10.88 21.65 0.24 -57.29 16 23 Si 0.98 45.95 29.56 68.60 2.03 47.98 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 C 0.19 9.40 5.70 86.53 0.49 9.89 16 28 C -0.18 -6.70 6.77 -9.89 -0.07 -6.77 16 29 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 30 C 0.15 3.62 6.76 39.50 0.27 3.89 16 31 C -0.15 -2.98 9.38 22.30 0.21 -2.77 16 32 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.10 0.01 8.10 -2.39 -0.02 -0.01 16 34 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 35 H 0.20 -0.58 8.06 -2.91 -0.02 -0.61 16 36 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.23 2.75 7.46 -2.91 -0.02 2.73 16 38 H 0.41 7.48 7.32 -92.71 -0.68 6.80 16 39 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.07 1.83 7.94 -2.39 -0.02 1.81 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.05 2.89 6.53 -2.38 -0.02 2.87 16 46 H 0.14 3.27 7.12 -2.91 -0.02 3.25 16 Total: -1.00 -80.70 384.59 2.71 -77.98 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.33 Total: 16.04 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.52 Total: 4.71 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.09 Total: -125.91 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.80 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.70 2.71 -77.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978318717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.311 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds