Wall clock time and date at job start Sat Apr 11 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40580 * 120.13609 * 2 1 4 4 C 1.34847 * 120.34167 * 179.97438 * 3 2 1 5 5 N 1.36679 * 120.64259 * 0.02562 * 4 3 2 6 6 C 1.36191 * 132.29189 * 180.36031 * 5 4 3 7 7 C 1.36581 * 107.09245 * 180.08429 * 6 5 4 8 8 C 1.47586 * 125.91695 * 179.84040 * 7 6 5 9 9 O 1.21585 * 120.00515 * 359.71564 * 8 7 6 10 10 N 1.34779 * 119.99709 * 179.71771 * 8 7 6 11 11 C 1.46504 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47265 * 180.02562 * 11 10 8 13 13 H 1.09000 * 115.51673 * 330.41864 * 12 11 10 14 14 C 1.52997 * 117.44450 * 185.00488 * 12 11 10 15 15 H 1.08998 * 119.53736 * 4.15344 * 14 12 11 16 16 C 1.54384 * 118.12809 * 160.85582 * 14 12 11 17 17 N 1.48147 * 104.62345 * 87.18511 * 16 14 12 18 18 C 1.36937 * 127.83809 * 140.39531 * 17 16 14 19 19 H 1.08002 * 119.99238 * 195.59853 * 18 17 16 20 20 C 1.38810 * 119.99994 * 15.59663 * 18 17 16 21 21 N 1.31620 * 119.99862 * 9.10173 * 20 18 17 22 22 Si 1.86797 * 119.99935 * 189.09597 * 20 18 17 23 23 H 1.48500 * 109.47270 * 60.00035 * 22 20 18 24 24 H 1.48492 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47148 * 300.00123 * 22 20 18 26 26 C 1.48148 * 104.31933 * 320.41763 * 17 16 14 27 27 C 1.52995 * 117.40703 * 115.77364 * 12 11 10 28 28 H 1.09002 * 119.54474 * 355.89908 * 27 12 11 29 29 N 1.34587 * 108.15953 * 359.58222 * 7 6 5 30 30 C 1.32231 * 109.02395 * 0.26248 * 29 7 6 31 31 C 1.35895 * 120.13834 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46809 * 270.01790 * 1 2 3 33 33 H 1.08995 * 109.47007 * 30.01744 * 1 2 3 34 34 H 1.08999 * 109.47067 * 150.02179 * 1 2 3 35 35 H 1.08000 * 119.82395 * 359.96490 * 3 2 1 36 36 H 1.08005 * 119.67695 * 180.02562 * 4 3 2 37 37 H 1.08000 * 126.45715 * 359.95878 * 6 5 4 38 38 H 0.96999 * 119.99753 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46742 * 60.00046 * 11 10 8 40 40 H 1.09002 * 109.46878 * 300.00711 * 11 10 8 41 41 H 1.09001 * 110.40814 * 205.97275 * 16 14 12 42 42 H 1.09010 * 110.40399 * 328.39988 * 16 14 12 43 43 H 0.96999 * 119.99692 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.41069 * 280.79665 * 26 17 16 45 45 H 1.09009 * 110.50408 * 158.41480 * 26 17 16 46 46 H 1.08008 * 120.32133 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2158 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2621 0.0472 0.0005 6 6 5.5969 -0.2230 0.0073 7 6 5.7314 -1.5822 0.0015 8 6 7.0060 -2.3261 0.0023 9 8 8.0619 -1.7232 0.0033 10 7 6.9997 -3.6739 0.0018 11 6 8.2649 -4.4124 0.0020 12 6 7.9783 -5.9152 0.0007 13 1 7.0497 -6.2165 0.4855 14 6 9.1747 -6.8614 0.1191 15 1 10.1728 -6.4495 0.2681 16 6 8.9115 -8.3151 0.5673 17 7 8.6057 -9.0434 -0.6860 18 6 8.9997 -10.3058 -1.0415 19 1 8.9260 -10.6246 -2.0708 20 6 9.4937 -11.1755 -0.0790 21 7 9.4183 -10.8576 1.1960 22 14 10.2653 -12.7970 -0.5934 23 1 11.4333 -12.5330 -1.4716 24 1 10.7106 -13.5382 0.6138 25 1 9.2648 -13.6093 -1.3313 26 6 7.7776 -8.0958 -1.4677 27 6 8.4272 -6.7168 -1.2228 28 1 8.8684 -6.1972 -2.0734 29 7 4.5000 -2.1255 0.0007 30 6 3.6010 -1.1558 0.0001 31 6 2.1893 -1.1752 0.0005 32 1 -0.3633 0.0003 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6721 2.1507 -0.0006 36 1 4.0926 2.1609 0.0009 37 1 6.3982 0.5010 0.0138 38 1 6.1573 -4.1548 0.0005 39 1 8.8374 -4.1521 0.8923 40 1 8.8381 -4.1513 -0.8877 41 1 9.7989 -8.7329 1.0429 42 1 8.0604 -8.3550 1.2473 43 1 9.7638 -11.4653 1.8685 44 1 6.7495 -8.1013 -1.1057 45 1 7.8077 -8.3471 -2.5280 46 1 1.6568 -2.1149 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978464493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:37 Heat of formation + Delta-G solvation = 111.886686 kcal Electronic energy + Delta-G solvation = -27456.252135 eV Core-core repulsion = 23541.910224 eV Total energy + Delta-G solvation = -3914.341912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.23553 -39.67977 -38.69057 -37.91425 -34.96070 -34.64160 -33.25334 -31.29424 -30.78563 -30.37213 -27.89807 -27.13199 -27.01068 -25.14898 -24.01054 -22.89128 -22.17532 -21.06147 -20.51626 -19.65412 -19.18929 -18.45769 -17.45933 -16.83806 -16.69114 -16.46570 -15.85814 -15.48955 -15.10491 -14.98020 -14.77492 -14.42692 -14.26639 -14.02052 -13.76661 -13.51413 -13.06830 -13.04911 -12.71567 -12.61426 -12.59882 -12.14599 -11.99496 -11.77059 -11.21297 -11.12555 -11.05453 -10.78651 -10.71077 -10.60549 -10.29172 -10.18241 -10.11902 -9.69460 -9.38334 -9.27929 -9.06663 -8.84984 -8.59082 -8.26737 -6.82175 -5.75789 -3.09860 0.18816 0.76502 1.78829 2.05211 2.91447 3.14350 3.40128 3.41575 3.45972 3.47343 3.63577 3.96578 4.18605 4.21171 4.27525 4.50197 4.55214 4.69847 4.88613 4.96397 5.00467 5.05210 5.08177 5.21380 5.36099 5.40723 5.46091 5.49428 5.53444 5.58928 5.78255 5.84200 5.94861 5.96473 5.98362 6.02456 6.06535 6.28526 6.42003 6.53802 6.62458 6.73345 6.77946 6.98524 7.23916 7.41282 7.57600 7.61239 7.75661 8.18172 8.25381 9.15110 9.77919 10.55622 11.38529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.001753 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.561477 B =15969.770732 C =16838.980283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.135 4.135 4 C 0.058 3.942 5 N -0.367 5.367 6 C -0.020 4.020 7 C 0.010 3.990 8 C 0.599 3.401 9 O -0.542 6.542 10 N -0.704 5.704 11 C 0.154 3.846 12 C -0.150 4.150 13 H 0.104 0.896 14 C -0.161 4.161 15 H 0.103 0.897 16 C 0.184 3.816 17 N -0.595 5.595 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.154 3.846 27 C -0.171 4.171 28 H 0.103 0.897 29 N -0.464 5.464 30 C 0.231 3.769 31 C -0.079 4.079 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.196 0.804 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.024 0.976 43 H 0.255 0.745 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 28.400 -1.410 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.076 4.076 3 C -0.155 4.155 4 C -0.063 4.063 5 N -0.039 5.039 6 C -0.155 4.155 7 C -0.123 4.123 8 C 0.383 3.617 9 O -0.419 6.419 10 N -0.354 5.354 11 C 0.031 3.969 12 C -0.169 4.169 13 H 0.122 0.878 14 C -0.182 4.182 15 H 0.121 0.879 16 C 0.058 3.942 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 C -0.191 4.191 28 H 0.121 0.879 29 N -0.185 5.185 30 C -0.015 4.015 31 C -0.100 4.100 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.213 0.787 38 H 0.247 0.753 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.380 27.684 -1.324 32.194 hybrid contribution 0.242 -0.067 -0.224 0.336 sum -16.138 27.617 -1.548 32.024 Atomic orbital electron populations 1.20787 0.89449 1.03581 1.03056 1.19783 0.97197 0.91939 0.98697 1.20778 0.92076 0.99431 1.03234 1.21664 0.93053 0.88648 1.02900 1.42769 1.07174 1.07864 1.46138 1.22606 0.83522 0.97878 1.11469 1.20656 0.92628 0.91058 1.07966 1.16859 0.86042 0.82117 0.76675 1.90801 1.31055 1.68899 1.51153 1.45847 1.10845 1.05561 1.73187 1.20934 0.84749 0.88932 1.02253 1.22521 1.00475 0.90618 1.03254 0.87805 1.24232 0.94833 0.97994 1.01115 0.87864 1.21065 1.00570 0.83984 0.88563 1.45197 1.57034 1.12849 1.16720 1.18953 1.36348 0.87064 0.93115 0.90660 1.24894 1.02107 0.98178 0.95156 1.69891 1.50178 1.37203 0.98952 0.86189 0.79280 0.83078 0.77146 1.21094 1.21560 1.21026 1.21140 0.93159 0.87002 0.95945 1.23988 1.04983 0.98716 0.91392 0.87921 1.70853 0.97890 1.28828 1.20921 1.20923 0.94401 0.80117 1.06049 1.20191 0.87912 0.99878 1.01971 0.90417 0.90931 0.90745 0.82988 0.81577 0.78699 0.75277 0.90858 0.91202 0.89194 0.95849 0.93532 0.95785 0.93231 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.31 10.02 36.00 0.36 0.05 16 2 C -0.07 -0.38 5.88 -104.58 -0.62 -0.99 16 3 C -0.13 -0.58 9.67 -39.90 -0.39 -0.96 16 4 C 0.06 0.32 10.93 -16.59 -0.18 0.14 16 5 N -0.37 -3.39 2.93 -62.37 -0.18 -3.58 16 6 C -0.02 -0.21 11.47 -16.21 -0.19 -0.39 16 7 C 0.01 0.13 6.94 -83.44 -0.58 -0.45 16 8 C 0.60 8.88 7.82 -12.45 -0.10 8.78 16 9 O -0.54 -9.24 16.87 5.29 0.09 -9.15 16 10 N -0.70 -9.89 5.55 -61.33 -0.34 -10.23 16 11 C 0.15 2.26 5.95 -4.04 -0.02 2.24 16 12 C -0.15 -2.44 5.39 -90.63 -0.49 -2.93 16 13 H 0.10 1.72 8.04 -51.93 -0.42 1.30 16 14 C -0.16 -3.13 6.85 -89.22 -0.61 -3.75 16 15 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 16 C 0.18 4.50 5.70 -2.41 -0.01 4.48 16 17 N -0.59 -15.55 3.38 -168.85 -0.57 -16.12 16 18 C -0.23 -6.42 10.35 -15.06 -0.16 -6.58 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.64 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 21 N -0.92 -27.15 10.87 55.49 0.60 -26.55 16 22 Si 0.91 22.21 29.56 -169.99 -5.03 17.18 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.15 3.31 7.04 -2.41 -0.02 3.29 16 27 C -0.17 -3.14 6.74 -89.22 -0.60 -3.74 16 28 H 0.10 1.75 8.12 -51.93 -0.42 1.32 16 29 N -0.46 -6.10 11.01 -9.35 -0.10 -6.21 16 30 C 0.23 2.51 7.79 -156.05 -1.22 1.29 16 31 C -0.08 -0.62 9.75 -39.30 -0.38 -1.01 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.11 8.09 -51.93 -0.42 -0.31 16 34 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 35 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16 36 H 0.17 0.36 8.06 -52.48 -0.42 -0.06 16 37 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.41 5.44 8.10 -40.82 -0.33 5.11 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 42 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 46 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -34.83 387.32 -11.52 -46.34 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.53 Total: 3.25 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -5.29 Total: -0.78 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.59 Total: -62.68 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.83 -11.52 -46.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978464493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.231 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds