Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40580 * 120.13609 * 2 1 4 4 C 1.34847 * 120.34167 * 179.97438 * 3 2 1 5 5 N 1.36679 * 120.64259 * 0.02562 * 4 3 2 6 6 C 1.36191 * 132.29189 * 180.36031 * 5 4 3 7 7 C 1.36581 * 107.09245 * 180.08429 * 6 5 4 8 8 C 1.47586 * 125.91695 * 179.84040 * 7 6 5 9 9 O 1.21585 * 120.00515 * 359.71564 * 8 7 6 10 10 N 1.34779 * 119.99709 * 179.71771 * 8 7 6 11 11 C 1.46504 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47265 * 180.02562 * 11 10 8 13 13 H 1.09000 * 115.51673 * 330.41864 * 12 11 10 14 14 C 1.52997 * 117.44450 * 185.00488 * 12 11 10 15 15 H 1.08998 * 119.53736 * 4.15344 * 14 12 11 16 16 C 1.54384 * 118.12809 * 160.85582 * 14 12 11 17 17 N 1.48147 * 104.62345 * 87.18511 * 16 14 12 18 18 C 1.36937 * 127.83809 * 140.39531 * 17 16 14 19 19 H 1.08002 * 119.99238 * 195.59853 * 18 17 16 20 20 C 1.38810 * 119.99994 * 15.59663 * 18 17 16 21 21 N 1.31620 * 119.99862 * 9.10173 * 20 18 17 22 22 Si 1.86797 * 119.99935 * 189.09597 * 20 18 17 23 23 H 1.48500 * 109.47270 * 60.00035 * 22 20 18 24 24 H 1.48492 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47148 * 300.00123 * 22 20 18 26 26 C 1.48148 * 104.31933 * 320.41763 * 17 16 14 27 27 C 1.52995 * 117.40703 * 115.77364 * 12 11 10 28 28 H 1.09002 * 119.54474 * 355.89908 * 27 12 11 29 29 N 1.34587 * 108.15953 * 359.58222 * 7 6 5 30 30 C 1.32231 * 109.02395 * 0.26248 * 29 7 6 31 31 C 1.35895 * 120.13834 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46809 * 270.01790 * 1 2 3 33 33 H 1.08995 * 109.47007 * 30.01744 * 1 2 3 34 34 H 1.08999 * 109.47067 * 150.02179 * 1 2 3 35 35 H 1.08000 * 119.82395 * 359.96490 * 3 2 1 36 36 H 1.08005 * 119.67695 * 180.02562 * 4 3 2 37 37 H 1.08000 * 126.45715 * 359.95878 * 6 5 4 38 38 H 0.96999 * 119.99753 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46742 * 60.00046 * 11 10 8 40 40 H 1.09002 * 109.46878 * 300.00711 * 11 10 8 41 41 H 1.09001 * 110.40814 * 205.97275 * 16 14 12 42 42 H 1.09010 * 110.40399 * 328.39988 * 16 14 12 43 43 H 0.96999 * 119.99692 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.41069 * 280.79665 * 26 17 16 45 45 H 1.09009 * 110.50408 * 158.41480 * 26 17 16 46 46 H 1.08008 * 120.32133 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2158 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2621 0.0472 0.0005 6 6 5.5969 -0.2230 0.0073 7 6 5.7314 -1.5822 0.0015 8 6 7.0060 -2.3261 0.0023 9 8 8.0619 -1.7232 0.0033 10 7 6.9997 -3.6739 0.0018 11 6 8.2649 -4.4124 0.0020 12 6 7.9783 -5.9152 0.0007 13 1 7.0497 -6.2165 0.4855 14 6 9.1747 -6.8614 0.1191 15 1 10.1728 -6.4495 0.2681 16 6 8.9115 -8.3151 0.5673 17 7 8.6057 -9.0434 -0.6860 18 6 8.9997 -10.3058 -1.0415 19 1 8.9260 -10.6246 -2.0708 20 6 9.4937 -11.1755 -0.0790 21 7 9.4183 -10.8576 1.1960 22 14 10.2653 -12.7970 -0.5934 23 1 11.4333 -12.5330 -1.4716 24 1 10.7106 -13.5382 0.6138 25 1 9.2648 -13.6093 -1.3313 26 6 7.7776 -8.0958 -1.4677 27 6 8.4272 -6.7168 -1.2228 28 1 8.8684 -6.1972 -2.0734 29 7 4.5000 -2.1255 0.0007 30 6 3.6010 -1.1558 0.0001 31 6 2.1893 -1.1752 0.0005 32 1 -0.3633 0.0003 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6721 2.1507 -0.0006 36 1 4.0926 2.1609 0.0009 37 1 6.3982 0.5010 0.0138 38 1 6.1573 -4.1548 0.0005 39 1 8.8374 -4.1521 0.8923 40 1 8.8381 -4.1513 -0.8877 41 1 9.7989 -8.7329 1.0429 42 1 8.0604 -8.3550 1.2473 43 1 9.7638 -11.4653 1.8685 44 1 6.7495 -8.1013 -1.1057 45 1 7.8077 -8.3471 -2.5280 46 1 1.6568 -2.1149 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978464493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 90.909485 kcal Electronic energy + Delta-G solvation = -27457.161775 eV Core-core repulsion = 23541.910224 eV Total energy + Delta-G solvation = -3915.251551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.91497 -40.90116 -40.15525 -38.54317 -36.38123 -35.33050 -34.92068 -32.76177 -31.83580 -30.92100 -29.16392 -28.85629 -27.96730 -26.74761 -24.80537 -23.73279 -22.77803 -22.74907 -21.83674 -20.94665 -20.78289 -19.19030 -18.82890 -18.18928 -17.55541 -17.21133 -17.02401 -16.66530 -16.20771 -16.10729 -15.84310 -15.55743 -15.29454 -15.06632 -14.89114 -14.62487 -14.46044 -14.28538 -14.10863 -13.40402 -13.36895 -13.18273 -12.94550 -12.91221 -12.69420 -12.66481 -12.51569 -12.34553 -11.99307 -11.96947 -11.76969 -11.62131 -11.59740 -11.29612 -10.93113 -10.70692 -10.58307 -10.18222 -9.86540 -8.91222 -8.88738 -7.91456 -5.28156 -0.35710 0.15731 0.96009 1.42127 1.46000 1.49741 1.56284 2.08216 2.25306 2.47861 2.51888 2.72982 2.96597 3.25690 3.43200 3.60090 3.68884 3.71360 3.78713 3.84801 4.07695 4.13800 4.18391 4.25935 4.27186 4.41071 4.45193 4.56001 4.63250 4.69422 4.71066 4.80767 4.88661 4.92577 5.00888 5.01313 5.16479 5.19752 5.28583 5.33563 5.39063 5.42340 5.44217 5.52400 5.55355 5.65925 5.93071 6.17676 6.35168 6.64651 7.00740 7.07694 7.67902 8.46817 9.22216 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.001753 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.561477 B =15969.770732 C =16838.980283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.049 4.049 3 C -0.128 4.128 4 C 0.047 3.953 5 N -0.369 5.369 6 C -0.015 4.015 7 C -0.024 4.024 8 C 0.600 3.400 9 O -0.570 6.570 10 N -0.702 5.702 11 C 0.164 3.836 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.171 4.171 15 H 0.118 0.882 16 C 0.189 3.811 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.148 3.852 27 C -0.160 4.160 28 H 0.126 0.874 29 N -0.503 5.503 30 C 0.219 3.781 31 C -0.117 4.117 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.216 0.784 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.000 1.000 43 H 0.250 0.750 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 31.455 -2.470 36.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.041 5.041 6 C -0.151 4.151 7 C -0.156 4.156 8 C 0.386 3.614 9 O -0.450 6.450 10 N -0.352 5.352 11 C 0.041 3.959 12 C -0.133 4.133 13 H 0.121 0.879 14 C -0.191 4.191 15 H 0.136 0.864 16 C 0.063 3.937 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.810 3.190 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.200 1.200 26 C 0.023 3.977 27 C -0.180 4.180 28 H 0.144 0.856 29 N -0.225 5.225 30 C -0.027 4.027 31 C -0.137 4.137 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.211 0.789 36 H 0.220 0.780 37 H 0.232 0.768 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.170 30.763 -2.409 35.810 hybrid contribution 0.544 -0.870 0.108 1.032 sum -17.626 29.893 -2.300 34.779 Atomic orbital electron populations 1.20902 0.87320 1.04727 1.04008 1.20245 0.98684 0.91526 0.95027 1.21346 0.91773 1.00531 1.01099 1.22472 0.93881 0.88606 1.02243 1.42930 1.06693 1.08641 1.45798 1.22837 0.84615 0.97280 1.10349 1.20498 0.92101 0.92139 1.10877 1.17089 0.86475 0.82050 0.75787 1.90767 1.32161 1.69362 1.52674 1.45778 1.10676 1.05608 1.73118 1.20779 0.85139 0.87387 1.02628 1.22386 0.98781 0.91205 1.00957 0.87896 1.23935 0.96852 0.96074 1.02260 0.86421 1.20803 0.97985 0.86928 0.87953 1.45519 1.58107 1.13120 1.17645 1.19360 1.36059 0.88242 0.93502 0.90159 1.25772 1.02981 1.01808 0.95175 1.70095 1.51278 1.38257 0.99911 0.85106 0.78503 0.78809 0.76616 1.20273 1.21904 1.20015 1.21283 0.92779 0.87817 0.95822 1.23931 1.04328 0.97678 0.92045 0.85615 1.70739 0.98271 1.30349 1.23121 1.21341 0.95292 0.80471 1.05575 1.20385 0.86879 1.01322 1.05096 0.89346 0.88815 0.90652 0.78913 0.78043 0.76770 0.74865 0.90637 0.90713 0.92653 0.98190 0.94091 0.95813 0.92407 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.25 10.02 71.24 0.71 0.47 16 2 C -0.05 -0.39 5.88 -19.84 -0.12 -0.51 16 3 C -0.13 -0.58 9.67 22.06 0.21 -0.36 16 4 C 0.05 0.37 10.93 83.16 0.91 1.28 16 5 N -0.37 -6.33 2.93 -351.25 -1.03 -7.36 16 6 C -0.01 -0.30 11.47 83.63 0.96 0.66 16 7 C -0.02 -0.66 6.94 40.80 0.28 -0.37 16 8 C 0.60 17.99 7.82 86.71 0.68 18.67 16 9 O -0.57 -19.50 16.87 -3.98 -0.07 -19.57 16 10 N -0.70 -19.68 5.55 -466.21 -2.59 -22.27 16 11 C 0.16 4.66 5.95 86.38 0.51 5.17 16 12 C -0.11 -3.65 5.39 -10.80 -0.06 -3.71 16 13 H 0.10 3.37 8.04 -2.39 -0.02 3.36 16 14 C -0.17 -6.65 6.85 -9.89 -0.07 -6.72 16 15 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 16 C 0.19 9.61 5.70 86.53 0.49 10.11 16 17 N -0.62 -33.16 3.38 -688.12 -2.33 -35.49 16 18 C -0.24 -14.01 10.35 84.03 0.87 -13.14 16 19 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 20 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 21 N -0.95 -58.22 10.87 21.65 0.24 -57.99 16 22 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 26 C 0.15 6.38 7.04 86.54 0.61 6.98 16 27 C -0.16 -5.72 6.74 -9.89 -0.07 -5.78 16 28 H 0.13 3.98 8.12 -2.39 -0.02 3.96 16 29 N -0.50 -13.65 11.01 -183.49 -2.02 -15.67 16 30 C 0.22 4.74 7.79 134.21 1.05 5.79 16 31 C -0.12 -1.74 9.75 22.45 0.22 -1.53 16 32 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.09 -0.14 8.09 -2.39 -0.02 -0.16 16 34 H 0.07 0.20 8.08 -2.39 -0.02 0.18 16 35 H 0.19 -0.70 8.06 -2.91 -0.02 -0.72 16 36 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 37 H 0.22 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.41 11.10 8.10 -92.71 -0.75 10.35 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.11 7.93 -2.39 -0.02 2.09 16 41 H 0.06 3.17 6.51 -2.39 -0.02 3.16 16 42 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -79.33 387.32 2.14 -77.18 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.25 Total: 18.96 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 7.66 Total: 13.76 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -7.73 Total: -138.77 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.07 Total: -19.57 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.33 2.14 -77.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978464493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.094 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds