Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30182 * 125.08913 * 2 1 4 4 C 1.34881 * 109.73764 * 180.26525 * 3 2 1 5 5 C 1.46293 * 126.50399 * 179.97438 * 4 3 2 6 6 O 1.21762 * 120.00317 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99242 * 0.02649 * 5 4 3 8 8 C 1.46498 * 119.99518 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47114 * 180.02562 * 8 7 5 10 10 H 1.08996 * 115.51563 * 330.41701 * 9 8 7 11 11 C 1.53001 * 117.44270 * 185.00011 * 9 8 7 12 12 H 1.08994 * 119.54264 * 4.11839 * 11 9 8 13 13 C 1.54396 * 118.11999 * 159.21415 * 11 9 8 14 14 N 1.48150 * 104.61834 * 87.19021 * 13 11 9 15 15 C 1.36934 * 127.83664 * 140.41222 * 14 13 11 16 16 H 1.07998 * 119.99840 * 195.56874 * 15 14 13 17 17 C 1.38811 * 120.00315 * 15.57400 * 15 14 13 18 18 N 1.31624 * 120.00054 * 9.09416 * 17 15 14 19 19 Si 1.86796 * 120.00211 * 189.09768 * 17 15 14 20 20 H 1.48497 * 109.47136 * 89.99828 * 19 17 15 21 21 H 1.48504 * 109.47025 * 210.00126 * 19 17 15 22 22 H 1.48497 * 109.47257 * 329.99670 * 19 17 15 23 23 C 1.48148 * 104.32398 * 320.41320 * 14 13 11 24 24 C 1.53003 * 117.44451 * 115.75870 * 9 8 7 25 25 H 1.09005 * 119.53791 * 355.88130 * 24 9 8 26 26 C 1.40145 * 107.00321 * 0.02562 * 4 3 2 27 27 C 1.40186 * 133.57867 * 179.97438 * 26 4 3 28 28 C 1.36335 * 119.20011 * 180.02562 * 27 26 4 29 29 C 1.40393 * 119.56008 * 359.97438 * 28 27 26 30 30 C 1.35030 * 120.43644 * 0.02562 * 29 28 27 31 31 N 1.36249 * 125.09225 * 180.31270 * 2 1 3 32 32 H 1.08999 * 109.47189 * 269.69428 * 1 2 3 33 33 H 1.09006 * 109.46879 * 29.69024 * 1 2 3 34 34 H 1.09006 * 109.47068 * 149.68680 * 1 2 3 35 35 H 0.96996 * 120.00415 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47693 * 299.99935 * 8 7 5 37 37 H 1.08998 * 109.47836 * 60.00045 * 8 7 5 38 38 H 1.09004 * 110.40328 * 205.97173 * 13 11 9 39 39 H 1.08999 * 110.40744 * 328.40537 * 13 11 9 40 40 H 0.96994 * 120.00342 * 180.02562 * 18 17 15 41 41 H 1.08994 * 110.41016 * 158.36917 * 23 14 13 42 42 H 1.08999 * 110.40464 * 280.68674 * 23 14 13 43 43 H 1.08006 * 120.39799 * 0.04277 * 27 26 4 44 44 H 1.07997 * 120.21816 * 180.02562 * 28 27 26 45 45 H 1.07997 * 119.77957 * 180.02562 * 29 28 27 46 46 H 1.08001 * 119.69551 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2553 1.0652 0.0000 4 6 3.5560 0.7081 -0.0059 5 6 4.7065 1.6117 -0.0084 6 8 5.8366 1.1585 -0.0143 7 7 4.5154 2.9459 -0.0041 8 6 5.6675 3.8508 -0.0071 9 6 5.1776 5.3002 -0.0006 10 1 4.2145 5.4725 -0.4810 11 6 6.2326 6.4017 -0.1209 12 1 7.2772 6.1309 -0.2742 13 6 5.7770 7.7965 -0.6012 14 7 5.3524 8.4968 0.6333 15 6 5.5606 9.8079 0.9693 16 1 5.4261 10.1315 1.9908 17 6 5.9445 10.7210 -0.0032 18 7 5.9355 10.3734 -1.2726 19 14 6.4741 12.4432 0.4898 20 1 7.9392 12.4605 0.7312 21 1 6.1407 13.3947 -0.6006 22 1 5.7632 12.8435 1.7305 23 6 4.6514 7.4569 1.4220 24 6 5.5168 6.1537 1.2232 25 1 6.0282 5.6980 2.0711 26 6 3.5964 -0.6927 -0.0104 27 6 4.6393 -1.6294 -0.0175 28 6 4.3390 -2.9592 -0.0209 29 6 2.9952 -3.3658 -0.0166 30 6 2.0034 -2.4496 -0.0097 31 7 2.2903 -1.1148 -0.0061 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3633 0.8928 -0.5090 34 1 -0.3633 -0.8872 -0.5187 35 1 3.6152 3.3069 0.0010 36 1 6.2748 3.6690 0.8795 37 1 6.2666 3.6735 -0.9003 38 1 6.6054 8.3255 -1.0725 39 1 4.9400 7.7054 -1.2935 40 1 6.2041 11.0113 -1.9521 41 1 4.6305 7.7296 2.4771 42 1 3.6379 7.3142 1.0469 43 1 5.6684 -1.3015 -0.0201 44 1 5.1295 -3.6950 -0.0260 45 1 2.7533 -4.4183 -0.0189 46 1 0.9738 -2.7757 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978501087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 110.280289 kcal Electronic energy + Delta-G solvation = -27867.896318 eV Core-core repulsion = 23953.484748 eV Total energy + Delta-G solvation = -3914.411570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24353 -39.47780 -38.47970 -37.86438 -34.84233 -33.95828 -33.23504 -31.98261 -30.88391 -30.42502 -28.01527 -26.95839 -26.65813 -24.97630 -24.28725 -23.33640 -21.56919 -21.00104 -20.60143 -19.77145 -19.19230 -18.07921 -17.34714 -16.77451 -16.60305 -16.58496 -15.97212 -15.70976 -15.01381 -14.99010 -14.73339 -14.27100 -14.04596 -13.67220 -13.60491 -13.44439 -13.06825 -13.00115 -12.71409 -12.64682 -12.58262 -12.12063 -12.05426 -11.77503 -11.19318 -11.05859 -10.98686 -10.83720 -10.80718 -10.55281 -10.21229 -10.09993 -10.06307 -9.77950 -9.68923 -9.31462 -9.06843 -8.84286 -8.58033 -7.82949 -6.82199 -5.75715 -3.09881 0.23499 0.67088 2.03479 2.05391 2.85486 3.24164 3.41233 3.46220 3.48160 3.50471 3.86661 3.95511 4.17774 4.26115 4.33602 4.46547 4.50719 4.62190 4.90619 4.91650 5.02352 5.06867 5.18010 5.34323 5.39012 5.42312 5.48937 5.50207 5.60833 5.63050 5.79524 5.86044 5.86696 5.98827 6.02210 6.08206 6.09884 6.30692 6.49954 6.63146 6.66757 6.74170 6.79812 6.98429 7.28063 7.42257 7.58339 7.70560 7.76398 8.25458 8.30072 9.15250 9.78000 10.55790 11.38601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028162 B = 0.001837 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.005585 B =15238.275792 C =15860.531405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.413 5.413 4 C -0.057 4.057 5 C 0.604 3.396 6 O -0.550 6.550 7 N -0.708 5.708 8 C 0.156 3.844 9 C -0.152 4.152 10 H 0.103 0.897 11 C -0.162 4.162 12 H 0.102 0.898 13 C 0.184 3.816 14 N -0.595 5.595 15 C -0.226 4.226 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.156 3.844 24 C -0.171 4.171 25 H 0.107 0.893 26 C 0.075 3.925 27 C -0.066 4.066 28 C -0.117 4.117 29 C -0.131 4.131 30 C 0.048 3.952 31 N -0.362 5.362 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.024 0.976 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.028 0.972 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.152 0.848 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -31.129 1.707 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 N -0.128 5.128 4 C -0.191 4.191 5 C 0.391 3.609 6 O -0.429 6.429 7 N -0.358 5.358 8 C 0.032 3.968 9 C -0.171 4.171 10 H 0.121 0.879 11 C -0.183 4.183 12 H 0.120 0.880 13 C 0.058 3.942 14 N -0.318 5.318 15 C -0.354 4.354 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.029 3.971 24 C -0.191 4.191 25 H 0.125 0.875 26 C -0.038 4.038 27 C -0.086 4.086 28 C -0.138 4.138 29 C -0.152 4.152 30 C -0.073 4.073 31 N -0.033 5.033 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.169 0.831 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.619 -30.243 1.615 31.777 hybrid contribution 0.114 0.092 0.189 0.239 sum -9.505 -30.151 1.804 31.665 Atomic orbital electron populations 1.20211 0.83768 1.04429 1.03828 1.23359 0.95727 0.78793 1.11026 1.70032 1.01407 1.27484 1.13901 1.20500 0.91562 0.89646 1.17436 1.16442 0.86339 0.81709 0.76411 1.90796 1.23203 1.76916 1.51977 1.45786 1.11048 1.05110 1.73843 1.20897 0.87342 0.86443 1.02075 1.22548 1.00924 0.90178 1.03486 0.87868 1.24176 0.96319 0.96584 1.01213 0.88037 1.21085 0.98884 0.85541 0.88688 1.45152 1.62575 1.05988 1.18094 1.19001 1.40621 0.82234 0.93507 0.90589 1.24899 1.02297 0.98077 0.95116 1.69902 1.52600 1.34826 0.98873 0.86105 0.78512 0.83742 0.77315 1.21523 1.21683 1.20569 1.21717 0.92895 0.86691 0.95791 1.24703 1.04172 0.98959 0.91301 0.87536 1.19273 0.84021 0.94297 1.06179 1.20852 0.99234 0.91204 0.97307 1.21245 0.96628 0.95948 0.99983 1.20930 0.92325 1.00022 1.01877 1.21668 1.01581 0.80257 1.03828 1.42866 1.07915 1.06531 1.46035 0.89913 0.88499 0.90781 0.75512 0.91383 0.91050 0.89239 0.95848 0.93585 0.93398 0.95474 0.82196 0.83995 0.83087 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.32 36.00 0.37 0.03 16 2 C 0.17 1.67 7.94 -154.57 -1.23 0.44 16 3 N -0.41 -5.33 10.90 -6.74 -0.07 -5.41 16 4 C -0.06 -0.80 7.05 -82.57 -0.58 -1.38 16 5 C 0.60 9.37 7.77 -13.02 -0.10 9.27 16 6 O -0.55 -9.58 15.75 5.13 0.08 -9.50 16 7 N -0.71 -10.26 5.55 -61.73 -0.34 -10.60 16 8 C 0.16 2.34 5.95 -4.04 -0.02 2.32 16 9 C -0.15 -2.52 5.34 -90.62 -0.48 -3.00 16 10 H 0.10 1.73 8.04 -51.93 -0.42 1.31 16 11 C -0.16 -3.19 6.77 -89.21 -0.60 -3.79 16 12 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 13 C 0.18 4.51 5.70 -2.40 -0.01 4.50 16 14 N -0.59 -15.59 3.38 -166.72 -0.56 -16.15 16 15 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 16 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 17 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 18 N -0.92 -27.20 10.86 55.49 0.60 -26.59 16 19 Si 0.91 22.25 29.56 -169.99 -5.03 17.23 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.16 3.36 7.10 -0.57 0.00 3.35 16 24 C -0.17 -3.16 7.03 -87.38 -0.61 -3.77 16 25 H 0.11 1.82 8.12 -51.93 -0.42 1.39 16 26 C 0.07 0.89 6.72 -83.99 -0.56 0.33 16 27 C -0.07 -0.65 9.73 -39.54 -0.38 -1.04 16 28 C -0.12 -0.75 10.08 -39.46 -0.40 -1.14 16 29 C -0.13 -0.62 9.98 -39.91 -0.40 -1.02 16 30 C 0.05 0.27 10.77 -16.60 -0.18 0.09 16 31 N -0.36 -3.42 2.94 -57.93 -0.17 -3.59 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.22 7.99 -51.93 -0.42 -0.19 16 35 H 0.41 5.55 8.10 -40.82 -0.33 5.22 16 36 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.16 1.65 7.17 -52.48 -0.38 1.28 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 46 H 0.17 0.32 7.94 -52.49 -0.42 -0.10 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.15 385.37 -11.62 -46.77 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.48 Total: 3.70 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -5.46 Total: -1.66 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.55 Total: -62.35 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.15 -11.62 -46.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978501087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.051 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds