Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30187 * 125.09007 * 2 1 4 4 C 1.34890 * 109.72974 * 180.17456 * 3 2 1 5 5 C 1.46288 * 126.49305 * 179.87675 * 4 3 2 6 6 O 1.21773 * 120.00034 * 179.68686 * 5 4 3 7 7 N 1.34786 * 119.99967 * 359.96111 * 5 4 3 8 8 C 1.46665 * 125.33471 * 179.72080 * 7 5 4 9 9 C 1.53730 * 107.93800 * 180.54694 * 8 7 5 10 10 H 1.09001 * 112.55861 * 139.72465 * 9 8 7 11 11 C 1.53694 * 109.34282 * 266.25367 * 9 8 7 12 12 N 1.46638 * 108.00703 * 127.55891 * 11 9 8 13 13 C 1.36938 * 125.32605 * 180.81938 * 12 11 9 14 14 H 1.08004 * 119.99589 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00120 * 0.02562 * 13 12 11 16 16 N 1.31614 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99797 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47275 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47112 * 120.00174 * 17 15 13 20 20 H 1.48505 * 109.46948 * 239.99996 * 17 15 13 21 21 C 1.46741 * 109.34230 * 0.83675 * 12 11 9 22 22 C 1.53929 * 106.72290 * 341.65920 * 21 12 11 23 23 H 1.09003 * 113.01398 * 150.83208 * 22 21 12 24 24 C 1.46772 * 125.33708 * 359.42344 * 7 5 4 25 25 C 1.40145 * 107.00739 * 359.61664 * 4 3 2 26 26 C 1.40174 * 133.57475 * 180.26459 * 25 4 3 27 27 C 1.36332 * 119.20032 * 179.97438 * 26 25 4 28 28 C 1.40397 * 119.55578 * 0.02562 * 27 26 25 29 29 C 1.35023 * 120.44092 * 359.97438 * 28 27 26 30 30 N 1.36249 * 125.08939 * 179.74511 * 2 1 3 31 31 H 1.08997 * 109.47311 * 270.25360 * 1 2 3 32 32 H 1.09002 * 109.46563 * 30.24859 * 1 2 3 33 33 H 1.08998 * 109.47299 * 150.25075 * 1 2 3 34 34 H 1.08994 * 109.77771 * 300.16940 * 8 7 5 35 35 H 1.08994 * 109.77047 * 60.93354 * 8 7 5 36 36 H 1.08994 * 109.76229 * 247.19941 * 11 9 8 37 37 H 1.09005 * 109.75930 * 7.91725 * 11 9 8 38 38 H 0.97000 * 120.00047 * 179.97438 * 16 15 13 39 39 H 1.09008 * 110.01015 * 222.34356 * 21 12 11 40 40 H 1.09003 * 110.01366 * 100.97680 * 21 12 11 41 41 H 1.09000 * 110.02542 * 280.77286 * 24 7 5 42 42 H 1.08998 * 110.02930 * 42.18652 * 24 7 5 43 43 H 1.08004 * 120.40508 * 359.93744 * 26 25 4 44 44 H 1.08001 * 120.22618 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.77429 * 179.97438 * 28 27 26 46 46 H 1.08002 * 119.69654 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5561 0.7079 -0.0039 5 6 4.7066 1.6115 -0.0077 6 8 5.8368 1.1583 -0.0052 7 7 4.5155 2.9458 -0.0083 8 6 5.5797 3.9550 -0.0062 9 6 4.9169 5.3420 0.0061 10 1 5.4323 6.0461 0.6594 11 6 4.7765 5.8520 -1.4370 12 7 3.3782 6.2410 -1.6463 13 6 2.8588 6.7297 -2.8153 14 1 1.8123 6.9903 -2.8738 15 6 3.6772 6.8899 -3.9250 16 7 4.9523 6.5718 -3.8537 17 14 2.9687 7.5572 -5.5194 18 1 1.5214 7.8366 -5.3393 19 1 3.6726 8.8120 -5.8870 20 1 3.1490 6.5539 -6.5993 21 6 2.6229 6.0251 -0.4068 22 6 3.4564 5.0622 0.4577 23 1 3.3014 5.2067 1.5269 24 6 3.2100 3.6165 -0.0175 25 6 3.5964 -0.6929 0.0025 26 6 4.6393 -1.6295 0.0072 27 6 4.3390 -2.9593 0.0137 28 6 2.9951 -3.3658 0.0151 29 6 2.0033 -2.4496 0.0105 30 7 2.2902 -1.1149 0.0050 31 1 -0.3634 0.0045 1.0276 32 1 -0.3632 0.8878 -0.5177 33 1 -0.3634 -0.8922 -0.5099 34 1 6.2001 3.8350 0.8819 35 1 6.1921 3.8470 -0.9013 36 1 5.4255 6.7145 -1.5878 37 1 5.0473 5.0602 -2.1355 38 1 5.5241 6.6834 -4.6293 39 1 1.6542 5.5796 -0.6332 40 1 2.4855 6.9717 0.1159 41 1 2.7979 3.6173 -1.0266 42 1 2.5262 3.1117 0.6649 43 1 5.6684 -1.3017 0.0050 44 1 5.1295 -3.6952 0.0169 45 1 2.7532 -4.4184 0.0198 46 1 0.9737 -2.7757 0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048935490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 92.656579 kcal Electronic energy + Delta-G solvation = -29841.940245 eV Core-core repulsion = 25926.764453 eV Total energy + Delta-G solvation = -3915.175792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02306 -39.84534 -38.00277 -37.59526 -34.75797 -33.74977 -32.16805 -31.76522 -30.60756 -29.92156 -29.26137 -27.19127 -25.50291 -25.28566 -24.11569 -23.75543 -22.16489 -21.33141 -19.96917 -19.36290 -19.13234 -17.72535 -16.98173 -16.75691 -16.41402 -16.17116 -15.86118 -15.65967 -15.01452 -14.61871 -14.52699 -14.13589 -13.79018 -13.57956 -13.41507 -13.00413 -12.86498 -12.69303 -12.56933 -12.46662 -11.96262 -11.90784 -11.84535 -11.78354 -11.37325 -11.26819 -10.83971 -10.79402 -10.78222 -10.45499 -10.27097 -9.99818 -9.93409 -9.72612 -9.61362 -9.56894 -9.50775 -8.53467 -8.15435 -7.57186 -6.74880 -5.65306 -2.98371 0.44123 0.87508 2.25313 2.31857 3.05455 3.40380 3.43795 3.48897 3.51669 3.76357 4.08905 4.14921 4.38587 4.51956 4.55266 4.65194 4.80533 4.90162 5.11139 5.12234 5.25263 5.27817 5.37845 5.46245 5.54376 5.59138 5.62445 5.74719 5.80785 5.85970 5.91572 5.98259 6.07671 6.18474 6.28420 6.31260 6.37759 6.46536 6.61812 6.71256 6.75287 6.80336 6.94215 6.97917 7.58421 7.64394 7.68256 7.89476 7.97958 8.34134 8.54832 9.29202 9.90098 10.54486 11.46263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.003139 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.582907 B = 8919.022205 C = 9356.848949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.405 5.405 4 C -0.044 4.044 5 C 0.615 3.385 6 O -0.556 6.556 7 N -0.591 5.591 8 C 0.122 3.878 9 C -0.124 4.124 10 H 0.089 0.911 11 C 0.186 3.814 12 N -0.602 5.602 13 C -0.226 4.226 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.147 3.853 22 C -0.114 4.114 23 H 0.087 0.913 24 C 0.122 3.878 25 C 0.071 3.929 26 C -0.063 4.063 27 C -0.121 4.121 28 C -0.132 4.132 29 C 0.048 3.952 30 N -0.363 5.363 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.251 0.749 39 H 0.038 0.962 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.160 0.840 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -19.936 11.785 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 N -0.121 5.121 4 C -0.179 4.179 5 C 0.403 3.597 6 O -0.436 6.436 7 N -0.322 5.322 8 C 0.000 4.000 9 C -0.144 4.144 10 H 0.108 0.892 11 C 0.061 3.939 12 N -0.329 5.329 13 C -0.354 4.354 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.020 3.980 22 C -0.134 4.134 23 H 0.105 0.895 24 C 0.000 4.000 25 C -0.042 4.042 26 C -0.082 4.082 27 C -0.143 4.143 28 C -0.153 4.153 29 C -0.074 4.074 30 N -0.034 5.034 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.177 0.823 44 H 0.158 0.842 45 H 0.167 0.833 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.625 -19.302 11.562 23.455 hybrid contribution -0.088 -0.493 -0.979 1.099 sum -6.713 -19.795 10.583 23.429 Atomic orbital electron populations 1.20194 0.83893 1.04429 1.03626 1.23468 0.95782 0.78850 1.11107 1.70225 1.01450 1.26791 1.13593 1.20435 0.91529 0.89427 1.16507 1.16046 0.86321 0.80286 0.76999 1.90772 1.23294 1.76224 1.53310 1.47956 1.09273 1.04256 1.70685 1.21833 0.89813 0.86766 1.01611 1.23153 0.94954 0.94914 1.01336 0.89232 1.21098 0.86312 0.98728 0.87785 1.44213 1.05059 1.75881 1.07700 1.19077 0.94003 1.35197 0.87151 0.90382 1.24795 0.95831 1.01730 0.98119 1.69973 1.03952 1.53747 1.29142 0.86058 0.77970 0.78153 0.83672 1.20532 1.21819 1.21875 1.21147 0.94351 0.94741 0.87743 1.23003 0.96457 0.94915 0.99065 0.89497 1.22195 0.84284 0.90976 1.02589 1.19221 0.84020 0.94231 1.06686 1.20835 0.99219 0.91190 0.97000 1.21198 0.96556 0.95879 1.00625 1.20889 0.92353 0.99881 1.02189 1.21636 1.01455 0.80387 1.03906 1.42879 1.07902 1.06456 1.46129 0.90085 0.88435 0.90902 0.92294 0.90856 0.93825 0.93132 0.93852 0.94394 0.96421 0.90523 0.89949 0.82294 0.84157 0.83264 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.32 36.01 0.37 -0.12 16 2 C 0.16 2.08 7.94 -154.56 -1.23 0.85 16 3 N -0.40 -6.55 8.36 -6.74 -0.06 -6.60 16 4 C -0.04 -0.77 6.88 -82.57 -0.57 -1.34 16 5 C 0.61 12.10 7.80 -13.02 -0.10 11.99 16 6 O -0.56 -11.69 16.06 5.12 0.08 -11.61 16 7 N -0.59 -11.48 3.31 -173.85 -0.58 -12.06 16 8 C 0.12 2.32 6.23 -3.57 -0.02 2.30 16 9 C -0.12 -2.38 4.02 -88.60 -0.36 -2.74 16 10 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 11 C 0.19 4.58 4.75 -3.61 -0.02 4.56 16 12 N -0.60 -15.49 3.37 -171.93 -0.58 -16.07 16 13 C -0.23 -6.36 10.25 -15.06 -0.15 -6.51 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 16 N -0.92 -27.54 10.25 55.49 0.57 -26.98 16 17 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C 0.15 3.05 6.37 -3.43 -0.02 3.03 16 22 C -0.11 -2.06 4.19 -88.25 -0.37 -2.43 16 23 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 24 C 0.12 2.27 5.19 -3.29 -0.02 2.25 16 25 C 0.07 1.04 6.72 -83.99 -0.56 0.48 16 26 C -0.06 -0.77 9.73 -39.54 -0.38 -1.16 16 27 C -0.12 -1.03 10.08 -39.46 -0.40 -1.43 16 28 C -0.13 -0.90 9.98 -39.91 -0.40 -1.30 16 29 C 0.05 0.37 10.77 -16.60 -0.18 0.20 16 30 N -0.36 -4.33 2.94 -57.93 -0.17 -4.50 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.39 7.98 -51.93 -0.41 -0.02 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.52 7.43 -51.93 -0.39 1.13 16 36 H 0.04 1.19 7.46 -51.93 -0.39 0.80 16 37 H 0.05 1.41 6.51 -51.93 -0.34 1.08 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.04 0.77 7.95 -51.92 -0.41 0.36 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 1.66 7.72 -51.93 -0.40 1.26 16 42 H 0.08 1.42 6.42 -51.93 -0.33 1.09 16 43 H 0.16 2.04 7.17 -52.48 -0.38 1.67 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.17 0.66 7.94 -52.49 -0.42 0.24 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -35.63 369.53 -11.08 -46.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.39 Total: -0.24 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -4.50 Total: 8.28 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.81 Total: -66.21 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.63 -11.08 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048935490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.367 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds