Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30187 * 125.09007 * 2 1 4 4 C 1.34890 * 109.72974 * 180.17456 * 3 2 1 5 5 C 1.46288 * 126.49305 * 179.87675 * 4 3 2 6 6 O 1.21773 * 120.00034 * 179.68686 * 5 4 3 7 7 N 1.34786 * 119.99967 * 359.96111 * 5 4 3 8 8 C 1.46665 * 125.33471 * 179.72080 * 7 5 4 9 9 C 1.53730 * 107.93800 * 180.54694 * 8 7 5 10 10 H 1.09001 * 112.55861 * 139.72465 * 9 8 7 11 11 C 1.53694 * 109.34282 * 266.25367 * 9 8 7 12 12 N 1.46638 * 108.00703 * 127.55891 * 11 9 8 13 13 C 1.36938 * 125.32605 * 180.81938 * 12 11 9 14 14 H 1.08004 * 119.99589 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00120 * 0.02562 * 13 12 11 16 16 N 1.31614 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99797 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47275 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47112 * 120.00174 * 17 15 13 20 20 H 1.48505 * 109.46948 * 239.99996 * 17 15 13 21 21 C 1.46741 * 109.34230 * 0.83675 * 12 11 9 22 22 C 1.53929 * 106.72290 * 341.65920 * 21 12 11 23 23 H 1.09003 * 113.01398 * 150.83208 * 22 21 12 24 24 C 1.46772 * 125.33708 * 359.42344 * 7 5 4 25 25 C 1.40145 * 107.00739 * 359.61664 * 4 3 2 26 26 C 1.40174 * 133.57475 * 180.26459 * 25 4 3 27 27 C 1.36332 * 119.20032 * 179.97438 * 26 25 4 28 28 C 1.40397 * 119.55578 * 0.02562 * 27 26 25 29 29 C 1.35023 * 120.44092 * 359.97438 * 28 27 26 30 30 N 1.36249 * 125.08939 * 179.74511 * 2 1 3 31 31 H 1.08997 * 109.47311 * 270.25360 * 1 2 3 32 32 H 1.09002 * 109.46563 * 30.24859 * 1 2 3 33 33 H 1.08998 * 109.47299 * 150.25075 * 1 2 3 34 34 H 1.08994 * 109.77771 * 300.16940 * 8 7 5 35 35 H 1.08994 * 109.77047 * 60.93354 * 8 7 5 36 36 H 1.08994 * 109.76229 * 247.19941 * 11 9 8 37 37 H 1.09005 * 109.75930 * 7.91725 * 11 9 8 38 38 H 0.97000 * 120.00047 * 179.97438 * 16 15 13 39 39 H 1.09008 * 110.01015 * 222.34356 * 21 12 11 40 40 H 1.09003 * 110.01366 * 100.97680 * 21 12 11 41 41 H 1.09000 * 110.02542 * 280.77286 * 24 7 5 42 42 H 1.08998 * 110.02930 * 42.18652 * 24 7 5 43 43 H 1.08004 * 120.40508 * 359.93744 * 26 25 4 44 44 H 1.08001 * 120.22618 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.77429 * 179.97438 * 28 27 26 46 46 H 1.08002 * 119.69654 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5561 0.7079 -0.0039 5 6 4.7066 1.6115 -0.0077 6 8 5.8368 1.1583 -0.0052 7 7 4.5155 2.9458 -0.0083 8 6 5.5797 3.9550 -0.0062 9 6 4.9169 5.3420 0.0061 10 1 5.4323 6.0461 0.6594 11 6 4.7765 5.8520 -1.4370 12 7 3.3782 6.2410 -1.6463 13 6 2.8588 6.7297 -2.8153 14 1 1.8123 6.9903 -2.8738 15 6 3.6772 6.8899 -3.9250 16 7 4.9523 6.5718 -3.8537 17 14 2.9687 7.5572 -5.5194 18 1 1.5214 7.8366 -5.3393 19 1 3.6726 8.8120 -5.8870 20 1 3.1490 6.5539 -6.5993 21 6 2.6229 6.0251 -0.4068 22 6 3.4564 5.0622 0.4577 23 1 3.3014 5.2067 1.5269 24 6 3.2100 3.6165 -0.0175 25 6 3.5964 -0.6929 0.0025 26 6 4.6393 -1.6295 0.0072 27 6 4.3390 -2.9593 0.0137 28 6 2.9951 -3.3658 0.0151 29 6 2.0033 -2.4496 0.0105 30 7 2.2902 -1.1149 0.0050 31 1 -0.3634 0.0045 1.0276 32 1 -0.3632 0.8878 -0.5177 33 1 -0.3634 -0.8922 -0.5099 34 1 6.2001 3.8350 0.8819 35 1 6.1921 3.8470 -0.9013 36 1 5.4255 6.7145 -1.5878 37 1 5.0473 5.0602 -2.1355 38 1 5.5241 6.6834 -4.6293 39 1 1.6542 5.5796 -0.6332 40 1 2.4855 6.9717 0.1159 41 1 2.7979 3.6173 -1.0266 42 1 2.5262 3.1117 0.6649 43 1 5.6684 -1.3017 0.0050 44 1 5.1295 -3.6952 0.0169 45 1 2.7532 -4.4184 0.0198 46 1 0.9737 -2.7757 0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048935490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 70.451653 kcal Electronic energy + Delta-G solvation = -29842.903122 eV Core-core repulsion = 25926.764453 eV Total energy + Delta-G solvation = -3916.138669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.94011 -41.39410 -39.49862 -38.50516 -36.54327 -34.66917 -34.08231 -32.56573 -32.05377 -31.10239 -30.90937 -28.32119 -27.14891 -26.99772 -25.29203 -24.81140 -23.57214 -22.18624 -21.80139 -20.77947 -20.63271 -19.03288 -18.61300 -17.87776 -17.53107 -17.27067 -17.11919 -16.58158 -16.52102 -16.29288 -15.78221 -15.53591 -15.41020 -14.67549 -14.62182 -14.30734 -14.26279 -14.01526 -13.64762 -13.49997 -13.42066 -13.28270 -13.08730 -13.03712 -12.75961 -12.70552 -12.65932 -12.61106 -11.94653 -11.89474 -11.87084 -11.73854 -11.71328 -11.44447 -11.26495 -11.04289 -10.70043 -10.40490 -9.68382 -8.86531 -8.50670 -7.84155 -5.19287 -0.39316 0.05455 1.18813 1.40949 1.43861 1.45516 1.55867 2.03985 2.23522 2.49537 2.53295 3.14830 3.33903 3.35978 3.44510 3.61552 3.67852 3.74972 3.83644 3.90208 3.95891 4.11772 4.15417 4.31986 4.33316 4.50825 4.53283 4.64100 4.71581 4.73612 4.79701 4.82096 4.84053 4.94972 4.99629 5.07102 5.10085 5.12138 5.22160 5.23365 5.40045 5.41764 5.48397 5.53464 5.63971 5.76692 6.11843 6.21686 6.46500 6.62321 7.11220 7.12079 7.80845 8.43158 9.26335 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.003139 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.582907 B = 8919.022205 C = 9356.848949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.164 3.836 3 N -0.438 5.438 4 C -0.115 4.115 5 C 0.607 3.393 6 O -0.587 6.587 7 N -0.601 5.601 8 C 0.126 3.874 9 C -0.111 4.111 10 H 0.120 0.880 11 C 0.200 3.800 12 N -0.623 5.623 13 C -0.236 4.236 14 H 0.086 0.914 15 C -0.071 4.071 16 N -0.953 5.953 17 Si 0.978 3.022 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.298 1.298 21 C 0.143 3.857 22 C -0.098 4.098 23 H 0.132 0.868 24 C 0.138 3.862 25 C 0.076 3.924 26 C -0.122 4.122 27 C -0.078 4.078 28 C -0.131 4.131 29 C 0.053 3.947 30 N -0.364 5.364 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.003 0.997 38 H 0.244 0.756 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.098 0.902 43 H 0.137 0.863 44 H 0.174 0.826 45 H 0.201 0.799 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -23.173 13.486 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 N -0.154 5.154 4 C -0.247 4.247 5 C 0.398 3.602 6 O -0.470 6.470 7 N -0.331 5.331 8 C 0.003 3.997 9 C -0.130 4.130 10 H 0.138 0.862 11 C 0.075 3.925 12 N -0.349 5.349 13 C -0.365 4.365 14 H 0.104 0.896 15 C -0.263 4.263 16 N -0.602 5.602 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.218 1.218 20 H -0.225 1.225 21 C 0.017 3.983 22 C -0.117 4.117 23 H 0.150 0.850 24 C 0.016 3.984 25 C -0.038 4.038 26 C -0.141 4.141 27 C -0.099 4.099 28 C -0.151 4.151 29 C -0.068 4.068 30 N -0.034 5.034 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.021 0.979 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.116 0.884 43 H 0.155 0.845 44 H 0.191 0.809 45 H 0.218 0.782 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.878 -22.512 13.295 27.949 hybrid contribution 0.830 0.174 -1.510 1.732 sum -9.049 -22.338 11.785 26.828 Atomic orbital electron populations 1.20415 0.80407 1.05676 1.05291 1.24315 0.97334 0.78365 1.09403 1.70039 1.01292 1.29065 1.14958 1.20089 0.91410 0.90444 1.22715 1.16551 0.87041 0.80497 0.76064 1.90713 1.24656 1.76693 1.54905 1.48057 1.09352 1.04504 1.71230 1.21735 0.89975 0.86869 1.01122 1.23028 0.96631 0.95241 0.98149 0.86160 1.20736 0.85607 0.95770 0.90410 1.44518 1.05969 1.75611 1.08823 1.19507 0.94431 1.34288 0.88280 0.89599 1.25684 0.96261 1.02801 1.01597 1.70227 1.05256 1.55271 1.29487 0.85000 0.78182 0.76943 0.79187 1.18507 1.21833 1.22506 1.21349 0.94468 0.96095 0.86357 1.23068 0.94326 0.93409 1.00898 0.85009 1.21983 0.84208 0.91637 1.00613 1.19385 0.85932 0.93669 1.04841 1.20795 0.98013 0.92837 1.02470 1.21763 0.98903 0.94539 0.94720 1.21539 0.90830 1.02212 1.00525 1.22713 1.04386 0.78436 1.01263 1.43124 1.06540 1.08048 1.45716 0.88041 0.89251 0.87568 0.90064 0.93999 0.97311 0.97872 0.94701 0.93870 0.94675 0.94580 0.88387 0.84497 0.80877 0.78194 0.76810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.32 71.24 0.74 -0.03 16 2 C 0.16 3.95 7.94 137.83 1.09 5.05 16 3 N -0.44 -14.64 8.36 -175.24 -1.46 -16.10 16 4 C -0.12 -4.31 6.88 41.23 0.28 -4.02 16 5 C 0.61 25.97 7.80 86.33 0.67 26.64 16 6 O -0.59 -27.06 16.06 -4.58 -0.07 -27.14 16 7 N -0.60 -24.93 3.31 -822.11 -2.72 -27.65 16 8 C 0.13 5.06 6.23 86.59 0.54 5.60 16 9 C -0.11 -4.37 4.02 -9.48 -0.04 -4.41 16 10 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 11 C 0.20 10.51 4.75 86.59 0.41 10.92 16 12 N -0.62 -33.20 3.37 -697.86 -2.35 -35.55 16 13 C -0.24 -13.68 10.25 84.03 0.86 -12.81 16 14 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 15 C -0.07 -4.22 5.48 84.86 0.47 -3.75 16 16 N -0.95 -60.49 10.25 21.65 0.22 -60.26 16 17 Si 0.98 47.75 29.55 68.60 2.03 49.77 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 21 C 0.14 5.88 6.37 86.65 0.55 6.43 16 22 C -0.10 -3.44 4.19 -9.26 -0.04 -3.48 16 23 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 24 C 0.14 5.33 5.19 86.72 0.45 5.78 16 25 C 0.08 2.30 6.72 39.23 0.26 2.56 16 26 C -0.12 -3.03 9.73 22.30 0.22 -2.81 16 27 C -0.08 -1.07 10.08 22.35 0.23 -0.84 16 28 C -0.13 -1.05 9.98 22.06 0.22 -0.83 16 29 C 0.05 0.56 10.77 83.22 0.90 1.46 16 30 N -0.36 -7.97 2.94 -337.21 -0.99 -8.96 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 0.62 7.98 -2.39 -0.02 0.60 16 34 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.04 1.92 7.43 -2.39 -0.02 1.90 16 36 H 0.01 0.51 7.46 -2.39 -0.02 0.49 16 37 H 0.00 0.19 6.51 -2.38 -0.02 0.17 16 38 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.04 1.74 7.95 -2.38 -0.02 1.72 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.67 7.72 -2.39 -0.02 1.65 16 42 H 0.10 3.46 6.42 -2.39 -0.02 3.45 16 43 H 0.14 3.91 7.17 -2.91 -0.02 3.89 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.20 -0.32 8.06 -2.91 -0.02 -0.34 16 46 H 0.22 0.15 7.94 -2.91 -0.02 0.13 16 Total: -1.00 -88.49 369.53 3.46 -85.03 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.00 Total: 9.39 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 7.81 Total: 31.47 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -7.31 Total: -148.53 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.07 Total: -27.14 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -88.49 3.46 -85.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048935490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.483 kcal (2) G-P(sol) polarization free energy of solvation -88.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds