Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 125.69019 * 2 1 4 4 N 1.36443 * 107.21689 * 179.83894 * 3 2 1 5 5 C 1.36725 * 132.26096 * 180.11293 * 4 3 2 6 6 C 1.34535 * 120.95330 * 180.33942 * 5 4 3 7 7 C 1.41773 * 120.14734 * 0.02562 * 6 5 4 8 8 C 1.47658 * 120.37247 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99960 * 204.69031 * 8 7 6 10 10 N 1.34772 * 119.99884 * 24.68771 * 8 7 6 11 11 C 1.46748 * 125.33138 * 5.20586 * 10 8 7 12 12 C 1.54094 * 106.63422 * 161.58637 * 11 10 8 13 13 H 1.09004 * 113.49708 * 151.36918 * 12 11 10 14 14 C 1.53972 * 109.44765 * 278.63904 * 12 11 10 15 15 N 1.46777 * 106.62729 * 138.17844 * 14 12 11 16 16 C 1.36931 * 125.33697 * 161.50646 * 15 14 12 17 17 H 1.07999 * 120.00277 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47180 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47336 * 119.99925 * 20 18 16 23 23 H 1.48499 * 109.47188 * 240.00011 * 20 18 16 24 24 C 1.48242 * 109.51534 * 341.52637 * 15 14 12 25 25 C 1.53727 * 107.13729 * 0.47687 * 24 15 14 26 26 H 1.09002 * 112.56020 * 140.21442 * 25 24 15 27 27 C 1.46639 * 125.32754 * 185.51161 * 10 8 7 28 28 C 1.38440 * 119.25963 * 359.97438 * 7 6 5 29 29 C 1.37188 * 106.97358 * 0.41954 * 4 3 2 30 30 N 1.32648 * 108.05843 * 359.73575 * 29 4 3 31 31 H 1.08990 * 109.47323 * 269.71668 * 1 2 3 32 32 H 1.09000 * 109.47316 * 149.71421 * 1 2 3 33 33 H 1.09001 * 109.46459 * 29.71683 * 1 2 3 34 34 H 1.08001 * 126.39297 * 359.97074 * 3 2 1 35 35 H 1.08006 * 119.52014 * 0.33897 * 5 4 3 36 36 H 1.08004 * 119.92880 * 179.97438 * 6 5 4 37 37 H 1.09005 * 110.00448 * 281.01214 * 11 10 8 38 38 H 1.08999 * 110.01004 * 42.38312 * 11 10 8 39 39 H 1.08993 * 110.02412 * 257.47094 * 14 12 11 40 40 H 1.08999 * 110.01994 * 18.88749 * 14 12 11 41 41 H 0.97001 * 120.00168 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.29900 * 241.03225 * 24 15 14 43 43 H 1.09001 * 110.03166 * 119.76613 * 24 15 14 44 44 H 1.08995 * 109.76407 * 300.44193 * 27 10 8 45 45 H 1.09005 * 109.76445 * 61.16055 * 27 10 8 46 46 H 1.07993 * 120.45893 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6678 0.0037 5 6 4.7841 1.3362 0.0073 6 6 5.9517 0.6680 0.0037 7 6 5.9608 -0.7497 -0.0045 8 6 7.2395 -1.4881 -0.0079 9 8 7.2878 -2.6180 -0.4543 10 7 8.3530 -0.9096 0.4837 11 6 8.4080 0.3988 1.1460 12 6 9.7309 0.4385 1.9352 13 1 10.1357 1.4435 2.0546 14 6 9.5517 -0.3012 3.2736 15 7 10.7671 -1.0980 3.4791 16 6 11.1820 -1.6152 4.6772 17 1 10.5969 -1.4476 5.5693 18 6 12.3540 -2.3559 4.7449 19 7 13.0663 -2.5615 3.6573 20 14 12.9196 -3.0620 6.3791 21 1 11.9489 -2.6926 7.4405 22 1 13.0019 -4.5413 6.2774 23 1 14.2574 -2.5141 6.7187 24 6 11.4789 -1.2574 2.1885 25 6 10.6621 -0.5057 1.1249 26 1 11.2923 0.0308 0.4157 27 6 9.7004 -1.4862 0.4349 28 6 4.7574 -1.4341 -0.0082 29 6 3.5555 -0.7036 -0.0038 30 7 2.2840 -1.0817 -0.0058 31 1 -0.3633 -0.0051 1.0275 32 1 -0.3634 -0.8874 -0.5183 33 1 -0.3632 0.8926 -0.5095 34 1 1.9650 2.1277 -0.0004 35 1 4.7888 2.4162 0.0131 36 1 6.8843 1.2127 0.0062 37 1 8.3910 1.1947 0.4013 38 1 7.5646 0.5074 1.8278 39 1 9.4351 0.4176 4.0846 40 1 8.6807 -0.9547 3.2251 41 1 13.8852 -3.0794 3.7045 42 1 11.5484 -2.3122 1.9227 43 1 12.4782 -0.8277 2.2577 44 1 9.7112 -2.4425 0.9577 45 1 10.0025 -1.6299 -0.6025 46 1 4.7417 -2.5139 -0.0140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049057761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = 102.489440 kcal Electronic energy + Delta-G solvation = -29173.069740 eV Core-core repulsion = 25258.320334 eV Total energy + Delta-G solvation = -3914.749407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.11602 -40.49531 -38.49645 -37.28504 -35.06976 -33.89695 -32.44387 -31.95397 -30.37255 -29.79789 -29.49260 -27.91582 -25.76795 -25.62274 -24.09424 -23.38947 -22.53892 -21.15882 -20.27226 -19.54703 -19.45688 -18.12505 -17.97617 -16.90829 -16.35822 -16.03781 -15.83488 -15.81022 -14.96583 -14.78574 -14.65971 -14.33571 -13.95462 -13.60649 -13.57259 -13.33112 -13.27299 -12.97103 -12.86272 -12.57355 -12.24529 -12.10004 -11.84634 -11.74439 -11.66497 -11.45525 -11.16507 -10.93948 -10.84806 -10.43837 -10.38598 -10.14462 -10.07415 -9.95432 -9.93623 -9.68651 -8.99133 -8.67142 -8.52750 -8.11405 -6.88114 -5.75920 -3.09100 0.25874 0.78871 2.26841 2.39612 2.73725 2.92716 3.38232 3.41903 3.44109 3.46324 3.87792 4.05639 4.29196 4.32865 4.45204 4.63588 4.70846 4.80777 4.88609 4.94643 5.02531 5.18109 5.27241 5.32809 5.35341 5.44469 5.47684 5.51485 5.57824 5.62460 5.68798 5.71144 5.77913 5.86193 6.02667 6.07965 6.19058 6.26858 6.31646 6.43773 6.55119 6.61449 6.72009 6.77152 7.45832 7.51990 7.55698 7.57824 7.76257 8.13146 8.19676 9.16398 9.77953 10.41473 11.36231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.002439 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.273339 B =11476.498476 C =11813.088679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.057 3.943 3 C -0.094 4.094 4 N -0.353 5.353 5 C 0.047 3.953 6 C -0.128 4.128 7 C -0.111 4.111 8 C 0.575 3.425 9 O -0.531 6.531 10 N -0.600 5.600 11 C 0.105 3.895 12 C -0.110 4.110 13 H 0.101 0.899 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.187 3.813 25 C -0.123 4.123 26 H 0.089 0.911 27 C 0.118 3.882 28 C -0.007 4.007 29 C 0.214 3.786 30 N -0.479 5.479 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.017 0.983 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.355 13.471 -10.025 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.227 4.227 4 N -0.024 5.024 5 C -0.074 4.074 6 C -0.148 4.148 7 C -0.121 4.121 8 C 0.363 3.637 9 O -0.409 6.409 10 N -0.333 5.333 11 C -0.018 4.018 12 C -0.130 4.130 13 H 0.119 0.881 14 C 0.019 3.981 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.063 3.937 25 C -0.143 4.143 26 H 0.107 0.893 27 C -0.003 4.003 28 C -0.028 4.028 29 C -0.027 4.027 30 N -0.200 5.200 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.494 11.934 -10.200 24.259 hybrid contribution 0.712 0.592 0.885 1.281 sum -17.782 12.525 -9.315 23.661 Atomic orbital electron populations 1.20149 0.86697 1.03239 1.02892 1.21004 0.96993 0.87882 1.01858 1.22498 0.80763 1.01175 1.18239 1.42823 1.06213 1.08827 1.44571 1.21484 0.82588 0.98750 1.04579 1.21473 0.98532 0.93608 1.01216 1.19891 0.93542 0.93456 1.05166 1.17496 0.82216 0.85369 0.78594 1.90823 1.85137 1.17679 1.47227 1.48078 1.07826 1.20302 1.57057 1.22320 0.99505 0.84642 0.95336 1.22999 0.93382 1.00018 0.96570 0.88082 1.21215 0.90875 0.92909 0.93072 1.44598 1.22639 1.60692 1.05195 1.19088 1.04735 1.26409 0.85392 0.90418 1.24791 0.97584 1.00571 0.97475 1.69938 1.16697 1.44460 1.25928 0.86037 0.78287 0.78654 0.82732 1.20541 1.21717 1.21741 1.21334 0.93104 0.97684 0.81579 1.23161 0.96682 0.96100 0.98390 0.89251 1.22051 0.79558 0.98213 1.00504 1.20652 0.86475 1.01210 0.94457 1.20695 0.94203 0.80325 1.07508 1.70589 0.98048 1.29470 1.21864 0.90655 0.90588 0.90779 0.79907 0.81431 0.81499 0.91407 0.90437 0.94667 0.96541 0.93709 0.92969 0.93116 0.90256 0.91851 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16 2 C 0.06 0.61 7.06 -83.00 -0.59 0.02 16 3 C -0.09 -0.84 11.64 -16.50 -0.19 -1.04 16 4 N -0.35 -3.71 2.94 -62.75 -0.18 -3.90 16 5 C 0.05 0.38 10.91 -16.68 -0.18 0.20 16 6 C -0.13 -1.17 8.12 -39.54 -0.32 -1.49 16 7 C -0.11 -1.42 5.69 -104.63 -0.60 -2.01 16 8 C 0.57 9.05 7.63 -12.42 -0.09 8.95 16 9 O -0.53 -10.29 16.93 5.29 0.09 -10.20 16 10 N -0.60 -8.89 3.30 -173.45 -0.57 -9.47 16 11 C 0.11 1.22 4.24 -3.34 -0.01 1.21 16 12 C -0.11 -1.61 4.17 -88.26 -0.37 -1.98 16 13 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.15 2.81 6.49 -3.38 -0.02 2.79 16 15 N -0.60 -14.79 3.42 -170.56 -0.58 -15.37 16 16 C -0.23 -6.23 10.25 -15.06 -0.15 -6.38 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.50 10.25 55.49 0.57 -25.93 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.19 4.25 4.84 -2.70 -0.01 4.24 16 25 C -0.12 -2.05 3.97 -88.60 -0.35 -2.40 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 C 0.12 1.97 6.21 -3.61 -0.02 1.95 16 28 C -0.01 -0.09 9.70 -38.60 -0.37 -0.46 16 29 C 0.21 2.84 7.79 -155.97 -1.22 1.62 16 30 N -0.48 -6.64 11.31 -9.02 -0.10 -6.74 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.17 1.16 4.45 -52.48 -0.23 0.93 16 37 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 38 H 0.08 0.84 6.96 -51.93 -0.36 0.48 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 42 H 0.05 1.34 6.76 -51.93 -0.35 0.99 16 43 H 0.05 1.27 7.41 -51.93 -0.38 0.89 16 44 H 0.08 1.60 7.30 -51.93 -0.38 1.22 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.16 2.21 7.86 -52.49 -0.41 1.80 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -34.91 367.73 -10.70 -45.61 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.21 Total: -1.27 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -4.23 Total: 4.78 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.87 Total: -61.40 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.91 -10.70 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049057761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.097 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds