Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 125.69019 * 2 1 4 4 N 1.36443 * 107.21689 * 179.83894 * 3 2 1 5 5 C 1.36725 * 132.26096 * 180.11293 * 4 3 2 6 6 C 1.34535 * 120.95330 * 180.33942 * 5 4 3 7 7 C 1.41773 * 120.14734 * 0.02562 * 6 5 4 8 8 C 1.47658 * 120.37247 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99960 * 204.69031 * 8 7 6 10 10 N 1.34772 * 119.99884 * 24.68771 * 8 7 6 11 11 C 1.46748 * 125.33138 * 5.20586 * 10 8 7 12 12 C 1.54094 * 106.63422 * 161.58637 * 11 10 8 13 13 H 1.09004 * 113.49708 * 151.36918 * 12 11 10 14 14 C 1.53972 * 109.44765 * 278.63904 * 12 11 10 15 15 N 1.46777 * 106.62729 * 138.17844 * 14 12 11 16 16 C 1.36931 * 125.33697 * 161.50646 * 15 14 12 17 17 H 1.07999 * 120.00277 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47180 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47336 * 119.99925 * 20 18 16 23 23 H 1.48499 * 109.47188 * 240.00011 * 20 18 16 24 24 C 1.48242 * 109.51534 * 341.52637 * 15 14 12 25 25 C 1.53727 * 107.13729 * 0.47687 * 24 15 14 26 26 H 1.09002 * 112.56020 * 140.21442 * 25 24 15 27 27 C 1.46639 * 125.32754 * 185.51161 * 10 8 7 28 28 C 1.38440 * 119.25963 * 359.97438 * 7 6 5 29 29 C 1.37188 * 106.97358 * 0.41954 * 4 3 2 30 30 N 1.32648 * 108.05843 * 359.73575 * 29 4 3 31 31 H 1.08990 * 109.47323 * 269.71668 * 1 2 3 32 32 H 1.09000 * 109.47316 * 149.71421 * 1 2 3 33 33 H 1.09001 * 109.46459 * 29.71683 * 1 2 3 34 34 H 1.08001 * 126.39297 * 359.97074 * 3 2 1 35 35 H 1.08006 * 119.52014 * 0.33897 * 5 4 3 36 36 H 1.08004 * 119.92880 * 179.97438 * 6 5 4 37 37 H 1.09005 * 110.00448 * 281.01214 * 11 10 8 38 38 H 1.08999 * 110.01004 * 42.38312 * 11 10 8 39 39 H 1.08993 * 110.02412 * 257.47094 * 14 12 11 40 40 H 1.08999 * 110.01994 * 18.88749 * 14 12 11 41 41 H 0.97001 * 120.00168 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.29900 * 241.03225 * 24 15 14 43 43 H 1.09001 * 110.03166 * 119.76613 * 24 15 14 44 44 H 1.08995 * 109.76407 * 300.44193 * 27 10 8 45 45 H 1.09005 * 109.76445 * 61.16055 * 27 10 8 46 46 H 1.07993 * 120.45893 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6678 0.0037 5 6 4.7841 1.3362 0.0073 6 6 5.9517 0.6680 0.0037 7 6 5.9608 -0.7497 -0.0045 8 6 7.2395 -1.4881 -0.0079 9 8 7.2878 -2.6180 -0.4543 10 7 8.3530 -0.9096 0.4837 11 6 8.4080 0.3988 1.1460 12 6 9.7309 0.4385 1.9352 13 1 10.1357 1.4435 2.0546 14 6 9.5517 -0.3012 3.2736 15 7 10.7671 -1.0980 3.4791 16 6 11.1820 -1.6152 4.6772 17 1 10.5969 -1.4476 5.5693 18 6 12.3540 -2.3559 4.7449 19 7 13.0663 -2.5615 3.6573 20 14 12.9196 -3.0620 6.3791 21 1 11.9489 -2.6926 7.4405 22 1 13.0019 -4.5413 6.2774 23 1 14.2574 -2.5141 6.7187 24 6 11.4789 -1.2574 2.1885 25 6 10.6621 -0.5057 1.1249 26 1 11.2923 0.0308 0.4157 27 6 9.7004 -1.4862 0.4349 28 6 4.7574 -1.4341 -0.0082 29 6 3.5555 -0.7036 -0.0038 30 7 2.2840 -1.0817 -0.0058 31 1 -0.3633 -0.0051 1.0275 32 1 -0.3634 -0.8874 -0.5183 33 1 -0.3632 0.8926 -0.5095 34 1 1.9650 2.1277 -0.0004 35 1 4.7888 2.4162 0.0131 36 1 6.8843 1.2127 0.0062 37 1 8.3910 1.1947 0.4013 38 1 7.5646 0.5074 1.8278 39 1 9.4351 0.4176 4.0846 40 1 8.6807 -0.9547 3.2251 41 1 13.8852 -3.0794 3.7045 42 1 11.5484 -2.3122 1.9227 43 1 12.4782 -0.8277 2.2577 44 1 9.7112 -2.4425 0.9577 45 1 10.0025 -1.6299 -0.6025 46 1 4.7417 -2.5139 -0.0140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049057761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = 80.134373 kcal Electronic energy + Delta-G solvation = -29174.039129 eV Core-core repulsion = 25258.320334 eV Total energy + Delta-G solvation = -3915.718795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.88291 -41.72502 -39.80516 -38.18168 -36.66430 -34.78596 -34.09828 -32.82826 -31.76743 -31.30481 -30.34009 -28.80837 -27.37893 -26.98309 -25.37812 -24.18428 -23.71553 -21.99644 -21.91819 -20.84660 -20.58210 -19.12325 -18.87861 -18.64013 -17.38482 -17.07896 -16.93822 -16.84758 -16.73772 -15.89685 -15.58716 -15.51496 -15.36725 -14.81876 -14.64343 -14.37181 -14.14145 -14.10336 -14.00332 -13.52141 -13.45862 -13.37128 -13.18278 -13.14747 -12.86808 -12.77776 -12.58727 -12.43467 -12.12644 -11.98606 -11.86987 -11.63035 -11.58011 -11.39882 -11.26138 -11.14599 -10.73524 -9.75353 -9.72925 -8.89225 -8.88676 -7.87042 -5.21198 -0.62290 0.05235 1.43437 1.45016 1.50102 1.54521 1.58372 1.76465 1.87733 2.47769 2.48575 3.04127 3.30817 3.31605 3.40323 3.45277 3.59678 3.72072 3.81213 3.91791 3.96820 4.16757 4.23449 4.32813 4.34902 4.38041 4.51816 4.56217 4.58684 4.76858 4.80537 4.82178 4.86554 4.89507 4.94197 5.00225 5.03320 5.10878 5.13918 5.22207 5.36683 5.38396 5.47006 5.61556 5.63382 5.78848 6.04190 6.19159 6.38220 6.80940 6.92431 7.09082 7.77624 8.39919 9.23431 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.002439 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.273339 B =11476.498476 C =11813.088679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.031 3.969 3 C -0.073 4.073 4 N -0.356 5.356 5 C 0.069 3.931 6 C -0.134 4.134 7 C -0.110 4.110 8 C 0.570 3.430 9 O -0.584 6.584 10 N -0.599 5.599 11 C 0.105 3.895 12 C -0.092 4.092 13 H 0.139 0.861 14 C 0.137 3.863 15 N -0.628 5.628 16 C -0.240 4.240 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.975 3.025 21 H -0.267 1.267 22 H -0.297 1.297 23 H -0.288 1.288 24 C 0.195 3.805 25 C -0.108 4.108 26 H 0.126 0.874 27 C 0.124 3.876 28 C -0.034 4.034 29 C 0.185 3.815 30 N -0.524 5.524 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.232 0.768 35 H 0.225 0.775 36 H 0.198 0.802 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.001 0.999 41 H 0.246 0.754 42 H 0.005 0.995 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.205 18.867 -10.356 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C -0.205 4.205 4 N -0.027 5.027 5 C -0.051 4.051 6 C -0.154 4.154 7 C -0.119 4.119 8 C 0.360 3.640 9 O -0.466 6.466 10 N -0.330 5.330 11 C -0.016 4.016 12 C -0.112 4.112 13 H 0.157 0.843 14 C 0.012 3.988 15 N -0.354 5.354 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.225 1.225 23 H -0.215 1.215 24 C 0.070 3.930 25 C -0.128 4.128 26 H 0.144 0.856 27 C 0.001 3.999 28 C -0.055 4.055 29 C -0.055 4.055 30 N -0.246 5.246 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.249 0.751 35 H 0.241 0.759 36 H 0.215 0.785 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.376 17.382 -10.514 28.773 hybrid contribution 1.173 -1.106 1.023 1.909 sum -19.204 16.276 -9.491 26.903 Atomic orbital electron populations 1.20259 0.84584 1.04217 1.03627 1.21736 0.98632 0.87813 1.02100 1.23268 0.79623 1.02608 1.15024 1.43108 1.07723 1.07833 1.44066 1.22355 0.80970 1.00900 1.00910 1.21682 1.00486 0.91301 1.01903 1.19709 0.91100 0.95312 1.05773 1.18052 0.83304 0.84920 0.77715 1.90789 1.85994 1.20151 1.49624 1.48124 1.06635 1.21477 1.56769 1.22656 0.98137 0.84171 0.96624 1.23047 0.94528 1.00395 0.93198 0.84316 1.21462 0.88152 0.92625 0.96591 1.44944 1.24357 1.61245 1.04902 1.19453 1.04604 1.26063 0.86772 0.90288 1.25605 0.98171 1.01583 1.00625 1.70163 1.16813 1.45263 1.27669 0.85058 0.77937 0.77190 0.79454 1.19118 1.22482 1.21484 1.21044 0.93085 0.95767 0.83115 1.23002 0.96482 0.95959 0.97344 0.85619 1.21783 0.81216 0.96392 1.00469 1.20472 0.87707 1.00432 0.96918 1.20532 0.93712 0.81995 1.09306 1.70526 0.99097 1.31835 1.23163 0.89931 0.91729 0.87715 0.75149 0.75894 0.78518 0.85616 0.88811 0.93564 0.98085 0.94427 0.97649 0.96111 0.95319 0.90659 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.42 71.24 0.74 -0.06 16 2 C 0.03 0.60 7.06 41.71 0.29 0.89 16 3 C -0.07 -1.00 11.64 83.33 0.97 -0.03 16 4 N -0.36 -6.22 2.94 -352.44 -1.04 -7.26 16 5 C 0.07 0.71 10.91 83.08 0.91 1.61 16 6 C -0.13 -1.84 8.12 22.30 0.18 -1.65 16 7 C -0.11 -2.71 5.69 -19.87 -0.11 -2.82 16 8 C 0.57 18.18 7.63 86.73 0.66 18.84 16 9 O -0.58 -24.31 16.93 -3.97 -0.07 -24.37 16 10 N -0.60 -16.97 3.30 -820.95 -2.71 -19.68 16 11 C 0.11 1.95 4.24 86.70 0.37 2.32 16 12 C -0.09 -2.36 4.17 -9.27 -0.04 -2.40 16 13 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 14 C 0.14 5.13 6.49 86.65 0.56 5.69 16 15 N -0.63 -31.45 3.42 -693.54 -2.37 -33.82 16 16 C -0.24 -13.44 10.25 84.03 0.86 -12.58 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.07 -3.84 5.48 84.86 0.47 -3.37 16 19 N -0.95 -57.25 10.25 21.65 0.22 -57.02 16 20 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 C 0.19 9.19 4.84 86.29 0.42 9.61 16 25 C -0.11 -3.44 3.97 -9.49 -0.04 -3.48 16 26 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 27 C 0.12 4.20 6.21 86.59 0.54 4.74 16 28 C -0.03 -0.95 9.70 22.91 0.22 -0.73 16 29 C 0.19 4.88 7.79 133.97 1.04 5.93 16 30 N -0.52 -14.73 11.31 -182.46 -2.06 -16.80 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.23 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.22 -0.18 8.06 -2.91 -0.02 -0.21 16 36 H 0.20 1.35 4.45 -2.91 -0.01 1.33 16 37 H 0.13 1.07 6.37 -2.38 -0.02 1.05 16 38 H 0.09 1.55 6.96 -2.39 -0.02 1.54 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.00 0.06 7.72 -2.39 -0.02 0.04 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.01 0.29 6.76 -2.39 -0.02 0.28 16 43 H 0.02 1.08 7.41 -2.39 -0.02 1.07 16 44 H 0.03 1.25 7.30 -2.39 -0.02 1.23 16 45 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.14 4.33 7.86 -2.91 -0.02 4.31 16 Total: -1.00 -87.59 367.73 3.05 -84.54 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.01 Total: 3.50 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 8.05 Total: 22.51 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -7.96 Total: -134.59 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.07 Total: -24.37 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -87.59 3.05 -84.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049057761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.671 kcal (2) G-P(sol) polarization free energy of solvation -87.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds