Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30439 * 125.98402 * 2 1 4 4 N 1.39935 * 108.89778 * 179.97438 * 3 2 1 5 5 H 0.96999 * 125.76285 * 180.02562 * 4 3 2 6 6 C 1.34267 * 108.49081 * 359.75827 * 4 3 2 7 7 C 1.38046 * 107.41136 * 0.38628 * 6 4 3 8 8 C 1.47428 * 126.41212 * 179.87384 * 7 6 4 9 9 O 1.21602 * 120.00204 * 179.69478 * 8 7 6 10 10 N 1.34781 * 120.00093 * 359.69237 * 8 7 6 11 11 C 1.46493 * 120.00247 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.37950 * 119.70713 * 259.99898 * 12 11 10 14 14 C 1.38219 * 119.82721 * 180.02562 * 13 12 11 15 15 C 1.38006 * 119.71840 * 0.26754 * 14 13 12 16 16 C 1.38790 * 120.50205 * 359.83509 * 15 14 13 17 17 C 1.37727 * 119.84657 * 359.44115 * 16 15 14 18 18 C 1.50592 * 122.84540 * 181.01698 * 17 16 15 19 19 C 1.52790 * 110.92946 * 340.16262 * 18 17 16 20 20 N 1.47232 * 107.90901 * 47.31642 * 19 18 17 21 21 C 1.36928 * 121.32456 * 115.78032 * 20 19 18 22 22 H 1.07999 * 120.00490 * 335.35439 * 21 20 19 23 23 C 1.38821 * 119.99961 * 155.35119 * 21 20 19 24 24 N 1.31616 * 119.99777 * 344.41291 * 23 21 20 25 25 Si 1.86800 * 120.00028 * 164.40599 * 23 21 20 26 26 H 1.48503 * 109.46563 * 92.96506 * 25 23 21 27 27 H 1.48497 * 109.47231 * 212.96734 * 25 23 21 28 28 H 1.48497 * 109.47265 * 332.97210 * 25 23 21 29 29 C 1.46683 * 117.34417 * 295.80660 * 20 19 18 30 30 H 1.08998 * 109.47166 * 270.03725 * 1 2 3 31 31 H 1.08995 * 109.47194 * 30.03933 * 1 2 3 32 32 H 1.09006 * 109.46767 * 150.04110 * 1 2 3 33 33 H 1.07996 * 126.29440 * 180.24419 * 6 4 3 34 34 H 0.97003 * 119.99685 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.47165 * 59.99830 * 11 10 8 36 36 H 1.09002 * 109.47119 * 300.00025 * 11 10 8 37 37 H 1.08002 * 120.08968 * 0.10241 * 13 12 11 38 38 H 1.08000 * 120.14264 * 180.28029 * 14 13 12 39 39 H 1.07992 * 119.75018 * 179.86054 * 15 14 13 40 40 H 1.08995 * 109.33847 * 219.66993 * 18 17 16 41 41 H 1.09004 * 108.94876 * 100.40257 * 18 17 16 42 42 H 1.09008 * 109.77164 * 287.71986 * 19 18 17 43 43 H 1.08993 * 109.77924 * 166.92240 * 19 18 17 44 44 H 0.97000 * 119.99956 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.43432 * 284.32378 * 29 20 19 46 46 H 1.09000 * 109.43279 * 164.46398 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0555 0.0000 4 7 3.6110 0.6443 0.0006 5 1 4.3842 1.2301 0.0011 6 6 3.6439 -0.6979 0.0063 7 6 2.3373 -1.1432 0.0005 8 6 1.8916 -2.5485 0.0011 9 8 0.7040 -2.8098 0.0011 10 7 2.8005 -3.5437 0.0015 11 6 2.3577 -4.9401 0.0015 12 6 3.5602 -5.8485 0.0027 13 6 3.9812 -6.4269 -1.1768 14 6 5.0834 -7.2609 -1.1784 15 6 5.7521 -7.5134 0.0021 16 6 5.3281 -6.9337 1.1897 17 6 4.2390 -6.0907 1.1905 18 6 3.7351 -5.4084 2.4348 19 6 4.2346 -6.1230 3.6895 20 7 5.6780 -6.3646 3.5285 21 6 6.5953 -5.7737 4.3559 22 1 6.3517 -4.8503 4.8603 23 6 7.8383 -6.3617 4.5465 24 7 8.0344 -7.6148 4.1948 25 14 9.2326 -5.3745 5.3019 26 1 9.2519 -5.5896 6.7711 27 1 10.5248 -5.8173 4.7196 28 1 9.0292 -3.9316 5.0157 29 6 6.0943 -7.2629 2.4462 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5132 33 1 4.5298 -1.3156 0.0119 34 1 3.7479 -3.3353 0.0011 35 1 1.7584 -5.1313 -0.8887 36 1 1.7578 -5.1311 0.8913 37 1 3.4517 -6.2277 -2.0968 38 1 5.4202 -7.7128 -2.0997 39 1 6.6120 -8.1667 0.0018 40 1 2.6451 -5.4101 2.4312 41 1 4.0918 -4.3784 2.4428 42 1 3.7125 -7.0729 3.8054 43 1 4.0608 -5.4968 4.5644 44 1 8.9030 -8.0255 4.3276 45 1 5.8932 -8.2948 2.7339 46 1 7.1617 -7.1396 2.2630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051296719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 78.813000 kcal Electronic energy + Delta-G solvation = -29146.179041 eV Core-core repulsion = 25230.402946 eV Total energy + Delta-G solvation = -3915.776094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60526 -39.86663 -38.80175 -36.01313 -34.94206 -33.15520 -32.78068 -31.91876 -30.45341 -30.15134 -28.77086 -28.11540 -25.89881 -25.58725 -23.24144 -23.07357 -22.14917 -20.78082 -20.44175 -19.82343 -19.04916 -18.59476 -16.81994 -16.62262 -15.98589 -15.66229 -15.50356 -15.16731 -14.86735 -14.53037 -14.30541 -14.24630 -13.87756 -13.63912 -13.25085 -13.11383 -12.95494 -12.93642 -12.61771 -12.57482 -12.32777 -12.18380 -11.96966 -11.55402 -11.28347 -11.15816 -10.98632 -10.89301 -10.75703 -10.41894 -10.18042 -9.95778 -9.89867 -9.76688 -9.73795 -9.16801 -8.85406 -8.73080 -8.29389 -7.91296 -6.82748 -5.88898 -3.28425 1.28877 1.59280 1.84573 1.98310 2.45804 3.31041 3.35908 3.38457 3.39736 3.42004 4.19538 4.31025 4.41019 4.42038 4.84106 4.96038 5.13864 5.17900 5.23382 5.23631 5.29392 5.39684 5.50944 5.52312 5.56968 5.67478 5.78564 5.82147 5.83979 5.97436 6.08947 6.12804 6.20178 6.30125 6.43769 6.46658 6.53202 6.63379 6.81142 6.82792 6.82881 6.92566 7.08075 7.17515 7.27983 7.42044 7.55258 7.60588 7.70143 8.29517 8.29621 9.10424 9.72854 10.31089 11.21580 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003301 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.365541 B = 8478.980107 C =10022.879825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.135 3.865 3 N -0.303 5.303 4 N -0.461 5.461 5 H 0.444 0.556 6 C 0.109 3.891 7 C -0.287 4.287 8 C 0.594 3.406 9 O -0.545 6.545 10 N -0.719 5.719 11 C 0.168 3.832 12 C -0.124 4.124 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.077 4.077 17 C -0.046 4.046 18 C -0.098 4.098 19 C 0.141 3.859 20 N -0.593 5.593 21 C -0.249 4.249 22 H 0.069 0.931 23 C 0.001 3.999 24 N -0.907 5.907 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.205 3.795 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.255 0.745 45 H 0.041 0.959 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 9.597 -11.919 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.126 5.126 4 N -0.165 5.165 5 H 0.289 0.711 6 C -0.044 4.044 7 C -0.302 4.302 8 C 0.381 3.619 9 O -0.424 6.424 10 N -0.370 5.370 11 C 0.045 3.955 12 C -0.125 4.125 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.133 4.133 16 C -0.079 4.079 17 C -0.047 4.047 18 C -0.137 4.137 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.378 4.378 22 H 0.087 0.913 23 C -0.197 4.197 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.079 3.921 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.204 0.796 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.944 10.582 -11.863 18.241 hybrid contribution 2.032 -0.182 0.315 2.064 sum -6.912 10.401 -11.549 17.010 Atomic orbital electron populations 1.20358 0.85620 1.04026 1.03692 1.22493 0.97404 0.88664 0.94768 1.77165 0.86254 1.22483 1.26705 1.46105 1.07860 1.05503 1.57045 0.71100 1.23241 0.99184 0.85718 0.96278 1.20311 0.92087 0.94656 1.23184 1.17211 0.85562 0.83411 0.75700 1.90731 1.16275 1.84274 1.51103 1.45916 1.09658 1.05768 1.75653 1.20140 0.94104 0.78606 1.02607 1.19813 0.97977 1.00903 0.93770 1.20764 0.97464 0.98688 0.96746 1.20937 0.96549 0.99700 0.97812 1.21191 0.99936 0.99930 0.92206 1.21033 0.95009 0.94278 0.97537 1.19454 0.94489 0.96678 0.94084 1.21031 0.98900 0.99543 0.94254 1.20919 0.86187 0.97048 0.94375 1.43993 0.99947 1.54659 1.32906 1.19159 0.94152 1.02627 1.21845 0.91327 1.25010 0.99451 0.95263 0.99995 1.69998 1.23027 1.10343 1.51866 0.86259 0.81925 0.79551 0.78889 1.21374 1.21522 1.20530 1.19765 0.97838 0.92728 0.81734 0.90096 0.91121 0.88507 0.79626 0.76718 0.91168 0.90384 0.86829 0.86708 0.86306 0.91804 0.91289 0.95550 0.92142 0.93501 0.94172 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.92 36.01 0.36 -0.45 16 2 C 0.13 1.63 7.26 -82.02 -0.60 1.03 16 3 N -0.30 -3.54 12.63 33.89 0.43 -3.11 16 4 N -0.46 -3.95 7.29 30.85 0.22 -3.73 16 5 H 0.44 2.25 8.96 -182.72 -1.64 0.61 16 6 C 0.11 0.95 11.52 -16.56 -0.19 0.76 16 7 C -0.29 -3.37 6.13 -105.07 -0.64 -4.02 16 8 C 0.59 7.86 7.81 -12.52 -0.10 7.76 16 9 O -0.55 -8.68 14.92 5.28 0.08 -8.60 16 10 N -0.72 -8.54 5.51 -62.56 -0.34 -8.88 16 11 C 0.17 2.16 5.10 -5.20 -0.03 2.13 16 12 C -0.12 -1.76 5.26 -104.47 -0.55 -2.31 16 13 C -0.12 -1.57 9.65 -39.69 -0.38 -1.95 16 14 C -0.13 -1.83 10.05 -39.67 -0.40 -2.22 16 15 C -0.11 -1.87 9.62 -39.46 -0.38 -2.25 16 16 C -0.08 -1.45 5.82 -104.55 -0.61 -2.06 16 17 C -0.05 -0.79 5.76 -104.61 -0.60 -1.39 16 18 C -0.10 -1.66 5.24 -28.04 -0.15 -1.81 16 19 C 0.14 2.84 6.52 -3.75 -0.02 2.82 16 20 N -0.59 -14.24 2.97 -173.94 -0.52 -14.75 16 21 C -0.25 -6.53 9.69 -15.06 -0.15 -6.68 16 22 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 23 C 0.00 0.03 4.99 -17.43 -0.09 -0.06 16 24 N -0.91 -25.24 11.09 55.49 0.62 -24.62 16 25 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.20 4.69 4.85 -5.04 -0.02 4.67 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.09 6.55 -51.93 -0.34 0.75 16 33 H 0.19 1.02 7.46 -52.49 -0.39 0.63 16 34 H 0.40 4.18 7.39 -40.82 -0.30 3.88 16 35 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.08 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.11 1.26 8.03 -52.49 -0.42 0.84 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.85 8.05 -52.49 -0.42 1.42 16 40 H 0.06 0.97 6.25 -51.93 -0.32 0.65 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.10 2.44 6.34 -51.93 -0.33 2.11 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -32.27 376.80 -10.82 -43.09 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.41 Total: 5.07 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.55 Total: -6.02 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.41 Total: -55.10 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.27 -10.82 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051296719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.907 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds