Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35563 * 125.82404 * 2 1 4 4 N 1.35399 * 107.16144 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.44253 * 180.02562 * 4 3 2 6 6 C 1.36667 * 107.12121 * 0.02562 * 4 3 2 7 7 C 1.47406 * 125.86514 * 180.02562 * 6 4 3 8 8 O 1.21605 * 119.99884 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99999 * 179.72214 * 7 6 4 10 10 C 1.46505 * 119.99746 * 180.27357 * 9 7 6 11 11 C 1.50707 * 109.46941 * 180.02562 * 10 9 7 12 12 C 1.37957 * 119.71041 * 260.00337 * 11 10 9 13 13 C 1.38217 * 119.82584 * 180.02562 * 12 11 10 14 14 C 1.38000 * 119.71732 * 0.25815 * 13 12 11 15 15 C 1.38794 * 120.50910 * 359.84117 * 14 13 12 16 16 C 1.37719 * 119.84192 * 359.44137 * 15 14 13 17 17 C 1.50586 * 122.84303 * 181.01986 * 16 15 14 18 18 C 1.52785 * 110.92814 * 340.15751 * 17 16 15 19 19 N 1.47225 * 107.90924 * 47.31837 * 18 17 16 20 20 C 1.36947 * 121.32572 * 115.78011 * 19 18 17 21 21 H 1.08001 * 119.99853 * 335.41833 * 20 19 18 22 22 C 1.38808 * 119.99792 * 155.41433 * 20 19 18 23 23 N 1.31622 * 120.00232 * 344.27066 * 22 20 19 24 24 Si 1.86800 * 119.99599 * 164.26395 * 22 20 19 25 25 H 1.48501 * 109.47354 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47130 * 120.00623 * 24 22 20 27 27 H 1.48505 * 109.47506 * 240.00212 * 24 22 20 28 28 C 1.46674 * 117.34698 * 295.80461 * 19 18 17 29 29 N 1.31614 * 108.27256 * 0.25873 * 6 4 3 30 30 H 1.08994 * 109.47290 * 89.99723 * 1 2 3 31 31 H 1.08997 * 109.47328 * 210.00157 * 1 2 3 32 32 H 1.09004 * 109.47126 * 329.99664 * 1 2 3 33 33 H 1.08004 * 126.42363 * 0.06294 * 3 2 1 34 34 H 0.96993 * 120.00468 * 0.27632 * 9 7 6 35 35 H 1.08998 * 109.47250 * 300.00271 * 10 9 7 36 36 H 1.08996 * 109.46922 * 60.00541 * 10 9 7 37 37 H 1.07997 * 120.07910 * 0.09752 * 12 11 10 38 38 H 1.07998 * 120.13868 * 180.28209 * 13 12 11 39 39 H 1.08000 * 119.74823 * 179.86454 * 14 13 12 40 40 H 1.09004 * 109.33814 * 219.66805 * 17 16 15 41 41 H 1.09003 * 108.95586 * 100.39871 * 17 16 15 42 42 H 1.09000 * 109.77549 * 287.71803 * 18 17 16 43 43 H 1.09003 * 109.77782 * 166.92364 * 18 17 16 44 44 H 0.97001 * 119.99548 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.43564 * 284.32449 * 28 19 18 46 46 H 1.09007 * 109.43616 * 164.45668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6659 -0.0006 5 1 4.3789 1.2208 -0.0004 6 6 3.5465 -0.7003 -0.0015 7 6 4.7174 -1.5957 -0.0018 8 8 5.8401 -1.1285 -0.0017 9 7 4.5437 -2.9322 0.0029 10 6 5.7075 -3.8221 0.0086 11 6 5.2434 -5.2559 0.0125 12 6 5.2281 -5.9664 1.1949 13 6 4.8034 -7.2817 1.2011 14 6 4.4026 -7.8768 0.0223 15 6 4.4196 -7.1636 -1.1683 16 6 4.8283 -5.8485 -1.1736 17 6 4.8520 -5.0057 -2.4213 18 6 4.8548 -5.8827 -3.6724 19 7 3.8107 -6.9076 -3.5091 20 6 2.7217 -6.9531 -4.3384 21 1 2.3933 -6.0592 -4.8478 22 6 2.0403 -8.1480 -4.5242 23 7 2.5980 -9.2859 -4.1684 24 14 0.3316 -8.1411 -5.2790 25 1 -0.0666 -6.7447 -5.5899 26 1 0.3394 -8.9431 -6.5289 27 1 -0.6361 -8.7303 -4.3190 28 6 3.9829 -7.8778 -2.4226 29 7 2.2861 -1.0792 -0.0071 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9712 2.1278 0.0010 34 1 3.6482 -3.3049 0.0024 35 1 6.3100 -3.6380 -0.8808 36 1 6.3063 -3.6313 0.8991 37 1 5.5459 -5.4957 2.1134 38 1 4.7850 -7.8413 2.1247 39 1 4.0728 -8.9051 0.0262 40 1 5.7460 -4.3819 -2.4187 41 1 3.9691 -4.3665 -2.4336 42 1 5.8274 -6.3618 -3.7847 43 1 4.6396 -5.2735 -4.5503 44 1 2.1216 -10.1209 -4.2979 45 1 4.7399 -8.6090 -2.7059 46 1 3.0374 -8.3882 -2.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051301210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 65.391078 kcal Electronic energy + Delta-G solvation = -29060.529920 eV Core-core repulsion = 25144.171807 eV Total energy + Delta-G solvation = -3916.358112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47760 -39.94217 -39.00539 -35.99277 -35.07159 -33.46514 -32.76654 -32.01987 -31.12011 -30.11133 -28.86771 -27.48832 -25.92261 -25.53606 -23.40247 -23.11093 -22.10548 -20.70234 -20.60240 -20.37864 -19.03491 -18.74309 -16.77787 -16.70187 -16.13648 -16.02342 -15.66485 -15.22723 -14.82376 -14.40620 -14.39290 -14.22399 -14.13036 -13.57788 -13.31501 -13.22176 -13.02284 -12.89530 -12.65610 -12.53620 -12.43451 -12.34106 -11.93806 -11.51078 -11.24546 -10.94786 -10.86424 -10.72682 -10.51500 -10.42129 -10.34594 -10.32952 -10.13412 -9.87702 -9.71621 -9.19138 -8.67660 -8.63722 -8.26680 -7.86100 -6.77187 -5.82728 -3.22142 1.15669 1.58961 1.89500 2.33765 2.47544 3.25396 3.37179 3.40489 3.45153 3.47485 4.05016 4.27565 4.47569 4.67908 4.80859 4.89471 4.95648 5.13548 5.27940 5.33166 5.42166 5.48991 5.51275 5.53081 5.55329 5.65516 5.72604 5.78241 5.85449 5.99817 6.14148 6.14557 6.23357 6.26789 6.36885 6.49187 6.56428 6.67277 6.85961 6.86200 6.87398 6.95927 7.12057 7.22614 7.30092 7.46539 7.61824 7.66010 7.77217 8.00385 8.35691 9.16640 9.78938 10.36704 11.27799 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.003483 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.162938 B = 8038.227822 C = 9812.524615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.001 3.999 3 C -0.027 4.027 4 N -0.525 5.525 5 H 0.429 0.571 6 C 0.150 3.850 7 C 0.606 3.394 8 O -0.548 6.548 9 N -0.691 5.691 10 C 0.167 3.833 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.132 4.132 14 C -0.111 4.111 15 C -0.077 4.077 16 C -0.043 4.043 17 C -0.101 4.101 18 C 0.142 3.858 19 N -0.593 5.593 20 C -0.247 4.247 21 H 0.070 0.930 22 C 0.001 3.999 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.288 1.288 28 C 0.205 3.795 29 N -0.436 5.436 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.186 0.814 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.254 0.746 45 H 0.041 0.959 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 16.713 11.873 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 C -0.166 4.166 4 N -0.127 5.127 5 H 0.269 0.731 6 C -0.112 4.112 7 C 0.389 3.611 8 O -0.426 6.426 9 N -0.342 5.342 10 C 0.045 3.955 11 C -0.127 4.127 12 C -0.134 4.134 13 C -0.150 4.150 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.044 4.044 17 C -0.140 4.140 18 C 0.016 3.984 19 N -0.315 5.315 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.080 3.920 29 N -0.160 5.160 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.192 16.007 11.800 20.006 hybrid contribution -0.691 0.842 -0.263 1.120 sum 1.501 16.849 11.537 20.475 Atomic orbital electron populations 1.20081 0.86973 1.02962 1.02720 1.20941 0.97104 0.87890 1.07364 1.22721 0.83006 1.01018 1.09843 1.42875 1.09139 1.07532 1.53136 0.73119 1.22639 0.93818 0.82293 1.12436 1.16448 0.85436 0.82098 0.77091 1.90830 1.23718 1.76169 1.51866 1.45786 1.11672 1.04287 1.72460 1.20259 0.87088 0.85331 1.02871 1.19732 1.04471 0.94594 0.93947 1.20749 1.01265 0.94812 0.96583 1.20926 1.01091 0.95140 0.97851 1.21201 0.99590 1.00038 0.92172 1.21033 0.95673 0.93564 0.97595 1.19441 0.96925 0.93948 0.94042 1.21060 1.00890 0.97705 0.94325 1.20902 0.92075 0.91086 0.94351 1.43996 1.22007 1.32922 1.32559 1.19221 1.03149 0.93751 1.21462 0.91243 1.24995 0.99585 0.95089 1.00043 1.70013 1.36429 0.96822 1.52067 0.86192 0.84412 0.77584 0.78440 1.20238 1.21716 1.21510 1.19769 1.00896 0.89716 0.81670 1.70158 0.99154 1.30982 1.15671 0.90992 0.90758 0.91171 0.79716 0.74700 0.90023 0.90766 0.86808 0.86629 0.86225 0.91979 0.91028 0.95562 0.92138 0.93593 0.94149 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 2 C 0.00 0.01 7.07 -83.00 -0.59 -0.57 16 3 C -0.03 -0.23 11.91 -16.93 -0.20 -0.43 16 4 N -0.53 -5.08 6.14 -10.78 -0.07 -5.14 16 5 H 0.43 3.12 8.96 -40.82 -0.37 2.76 16 6 C 0.15 1.95 7.95 -154.52 -1.23 0.72 16 7 C 0.61 8.58 7.81 -12.53 -0.10 8.48 16 8 O -0.55 -8.67 17.09 5.27 0.09 -8.58 16 9 N -0.69 -9.49 5.52 -62.57 -0.35 -9.84 16 10 C 0.17 2.26 5.10 -5.19 -0.03 2.23 16 11 C -0.13 -1.93 5.26 -104.46 -0.55 -2.48 16 12 C -0.12 -1.63 9.65 -39.69 -0.38 -2.01 16 13 C -0.13 -1.93 10.05 -39.68 -0.40 -2.33 16 14 C -0.11 -1.91 9.62 -39.46 -0.38 -2.29 16 15 C -0.08 -1.53 5.82 -104.56 -0.61 -2.14 16 16 C -0.04 -0.77 5.76 -104.61 -0.60 -1.38 16 17 C -0.10 -1.81 5.24 -28.05 -0.15 -1.96 16 18 C 0.14 2.98 6.52 -3.76 -0.02 2.95 16 19 N -0.59 -14.77 2.97 -173.95 -0.52 -15.28 16 20 C -0.25 -6.71 9.69 -15.06 -0.15 -6.86 16 21 H 0.07 1.86 7.88 -52.49 -0.41 1.45 16 22 C 0.00 0.02 4.99 -17.43 -0.09 -0.06 16 23 N -0.91 -25.84 11.10 55.49 0.62 -25.23 16 24 Si 0.90 21.60 29.58 -169.99 -5.03 16.58 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.20 4.86 4.85 -5.05 -0.02 4.84 16 29 N -0.44 -5.98 10.89 -7.50 -0.08 -6.06 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.19 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.42 5.91 8.14 -40.82 -0.33 5.58 16 35 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 36 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.11 1.33 8.03 -52.49 -0.42 0.91 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 40 H 0.06 0.98 6.25 -51.93 -0.32 0.66 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 2.54 6.34 -51.93 -0.33 2.21 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -32.34 381.58 -10.98 -43.33 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.28 Total: 7.95 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -5.12 Total: -3.47 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.39 Total: -61.56 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.34 -10.98 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051301210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.718 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds