Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33324 * 126.10304 * 2 1 4 4 C 1.30860 * 109.67990 * 180.27628 * 3 2 1 5 5 N 1.34492 * 109.16593 * 359.76489 * 4 3 2 6 6 H 0.96995 * 126.47311 * 179.97438 * 5 4 3 7 7 C 1.36661 * 126.10910 * 179.88462 * 2 1 3 8 8 C 1.46760 * 126.84292 * 359.97438 * 7 2 1 9 9 O 1.21679 * 120.00331 * 359.71635 * 8 7 2 10 10 N 1.34781 * 119.99984 * 179.71164 * 8 7 2 11 11 C 1.46493 * 120.00247 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.37950 * 119.70713 * 259.99898 * 12 11 10 14 14 C 1.38219 * 119.82721 * 180.02562 * 13 12 11 15 15 C 1.38006 * 119.71840 * 0.26754 * 14 13 12 16 16 C 1.38790 * 120.50205 * 359.83509 * 15 14 13 17 17 C 1.37727 * 119.84657 * 359.44115 * 16 15 14 18 18 C 1.50592 * 122.84540 * 181.01698 * 17 16 15 19 19 C 1.52790 * 110.92946 * 340.16262 * 18 17 16 20 20 N 1.47232 * 107.90901 * 47.31642 * 19 18 17 21 21 C 1.36928 * 121.32456 * 115.78032 * 20 19 18 22 22 H 1.07999 * 120.00490 * 335.35439 * 21 20 19 23 23 C 1.38821 * 119.99961 * 155.35119 * 21 20 19 24 24 N 1.31616 * 119.99777 * 344.41291 * 23 21 20 25 25 Si 1.86800 * 120.00028 * 164.40599 * 23 21 20 26 26 H 1.48503 * 109.46563 * 92.96506 * 25 23 21 27 27 H 1.48497 * 109.47231 * 212.96734 * 25 23 21 28 28 H 1.48497 * 109.47265 * 332.97210 * 25 23 21 29 29 C 1.46683 * 117.34417 * 295.80660 * 20 19 18 30 30 H 1.09004 * 109.47079 * 270.11489 * 1 2 3 31 31 H 1.08996 * 109.46960 * 30.11629 * 1 2 3 32 32 H 1.08996 * 109.46727 * 150.11646 * 1 2 3 33 33 H 1.08003 * 125.41358 * 179.74159 * 4 3 2 34 34 H 0.97003 * 119.99685 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.47165 * 59.99830 * 11 10 8 36 36 H 1.09002 * 109.47119 * 300.00025 * 11 10 8 37 37 H 1.08002 * 120.08968 * 0.10241 * 13 12 11 38 38 H 1.08000 * 120.14264 * 180.28029 * 14 13 12 39 39 H 1.07992 * 119.75018 * 179.86054 * 15 14 13 40 40 H 1.08995 * 109.33847 * 219.66993 * 18 17 16 41 41 H 1.09004 * 108.94876 * 100.40257 * 18 17 16 42 42 H 1.09008 * 109.77164 * 287.71986 * 19 18 17 43 43 H 1.08993 * 109.77924 * 166.92240 * 19 18 17 44 44 H 0.97000 * 119.99956 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.43432 * 284.32378 * 29 20 19 46 46 H 1.09000 * 109.43279 * 164.46398 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 1 4.4189 -1.1747 -0.0086 7 6 2.3124 -1.1041 0.0022 8 6 1.8822 -2.5072 0.0056 9 8 0.6964 -2.7800 0.0118 10 7 2.8005 -3.4937 0.0016 11 6 2.3711 -4.8943 0.0044 12 6 3.5822 -5.7911 -0.0004 13 6 4.0026 -6.3659 -1.1819 14 6 5.1127 -7.1893 -1.1890 15 6 5.7899 -7.4350 -0.0119 16 6 5.3665 -6.8589 1.1777 17 6 4.2694 -6.0263 1.1839 18 6 3.7655 -5.3484 2.4306 19 6 4.2784 -6.0577 3.6829 20 7 5.7232 -6.2855 3.5145 21 6 6.6391 -5.6857 4.3369 22 1 6.3893 -4.7644 4.8422 23 6 7.8886 -6.2617 4.5212 24 7 8.0948 -7.5129 4.1689 25 14 9.2773 -5.2608 5.2690 26 1 9.3064 -5.4753 6.7382 27 1 10.5707 -5.6916 4.6801 28 1 9.0587 -3.8201 4.9833 29 6 6.1424 -7.1802 2.4303 30 1 -0.3633 0.0021 1.0277 31 1 -0.3633 0.8889 -0.5156 32 1 -0.3632 -0.8910 -0.5120 33 1 4.3970 1.3746 -0.0113 34 1 3.7459 -3.2762 -0.0031 35 1 1.7690 -5.0915 -0.8826 36 1 1.7776 -5.0906 0.8974 37 1 3.4664 -6.1721 -2.0992 38 1 5.4489 -7.6384 -2.1119 39 1 6.6560 -8.0800 -0.0165 40 1 2.6757 -5.3605 2.4326 41 1 4.1124 -4.3150 2.4364 42 1 3.7660 -7.0125 3.8018 43 1 4.1032 -5.4329 4.5585 44 1 8.9681 -7.9153 4.2973 45 1 5.9527 -8.2140 2.7193 46 1 7.2076 -7.0469 2.2415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051307834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = 64.371225 kcal Electronic energy + Delta-G solvation = -29224.132987 eV Core-core repulsion = 25307.730650 eV Total energy + Delta-G solvation = -3916.402337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42962 -40.01431 -39.02558 -36.09579 -35.17755 -33.51990 -32.79097 -31.89938 -31.16128 -30.22443 -28.97787 -27.56104 -25.85677 -25.64085 -23.28818 -23.09981 -22.21583 -21.41872 -20.66401 -19.89311 -19.14423 -18.91179 -16.88019 -16.47974 -16.19579 -15.97817 -15.71204 -15.29563 -14.93109 -14.68628 -14.39179 -14.35609 -14.12686 -13.68549 -13.36633 -13.11488 -13.01419 -12.91124 -12.74835 -12.65061 -12.43432 -12.25562 -12.04945 -11.61825 -11.35442 -11.04127 -10.95872 -10.80412 -10.65462 -10.46363 -10.25698 -10.24168 -10.07358 -9.97771 -9.83103 -9.27571 -8.77841 -8.67431 -8.38394 -7.98691 -6.87609 -5.92955 -3.32813 1.09265 1.49279 1.76607 2.62629 2.65515 3.10050 3.16450 3.28500 3.36004 3.37141 4.10249 4.23552 4.37466 4.58926 4.72191 4.90949 5.02309 5.04169 5.16622 5.22820 5.32140 5.41505 5.44850 5.47825 5.64602 5.67643 5.73279 5.79343 5.88912 5.90897 6.00875 6.04186 6.11948 6.20842 6.37591 6.39369 6.45416 6.56412 6.74286 6.74779 6.84631 6.92795 7.00474 7.11466 7.26961 7.34504 7.50804 7.65987 7.68482 7.98400 8.25210 9.06088 9.68355 10.26399 11.17523 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.003322 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.250027 B = 8426.083877 C = 9958.596146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.096 3.904 3 N -0.501 5.501 4 C 0.221 3.779 5 N -0.554 5.554 6 H 0.424 0.576 7 C -0.093 4.093 8 C 0.595 3.405 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.167 3.833 12 C -0.127 4.127 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.112 4.112 16 C -0.076 4.076 17 C -0.047 4.047 18 C -0.098 4.098 19 C 0.141 3.859 20 N -0.593 5.593 21 C -0.250 4.250 22 H 0.069 0.931 23 C 0.002 3.998 24 N -0.907 5.907 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.204 3.796 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.216 0.784 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.255 0.745 45 H 0.042 0.958 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 8.609 -11.890 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 N -0.221 5.221 4 C -0.063 4.063 5 N -0.159 5.159 6 H 0.263 0.737 7 C -0.209 4.209 8 C 0.381 3.619 9 O -0.402 6.402 10 N -0.370 5.370 11 C 0.045 3.955 12 C -0.128 4.128 13 C -0.136 4.136 14 C -0.149 4.149 15 C -0.131 4.131 16 C -0.078 4.078 17 C -0.047 4.047 18 C -0.137 4.137 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.380 4.380 22 H 0.087 0.913 23 C -0.197 4.197 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.079 3.921 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.230 0.770 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.031 9.089 -11.823 17.434 hybrid contribution 2.326 -0.583 0.301 2.417 sum -6.706 8.506 -11.522 15.814 Atomic orbital electron populations 1.20292 0.86504 1.03564 1.03120 1.21085 0.96923 0.86622 0.99220 1.70155 1.00475 1.30440 1.21073 1.25163 0.97427 0.82086 1.01613 1.43377 1.08128 1.08902 1.55488 0.73685 1.20943 0.84383 0.95098 1.20435 1.16817 0.85862 0.82541 0.76652 1.90814 1.15967 1.82908 1.50553 1.45994 1.09379 1.06287 1.75320 1.20198 0.94352 0.78040 1.02895 1.19785 0.97878 1.01213 0.93887 1.20767 0.97424 0.98748 0.96678 1.20949 0.96386 0.99695 0.97906 1.21213 0.99907 0.99809 0.92180 1.21052 0.94968 0.94196 0.97574 1.19458 0.94453 0.96767 0.94052 1.21033 0.98861 0.99468 0.94371 1.20914 0.86195 0.97131 0.94289 1.43992 0.99833 1.54708 1.32953 1.19156 0.93820 1.02785 1.22204 0.91324 1.25017 0.99407 0.95297 0.99942 1.69996 1.22681 1.10697 1.51808 0.86251 0.81831 0.79599 0.78901 1.21310 1.21481 1.20515 1.19776 0.97709 0.92875 0.81740 0.90691 0.91142 0.89290 0.76777 0.76997 0.90863 0.90099 0.86801 0.86601 0.86192 0.91825 0.91505 0.95477 0.92095 0.93453 0.94085 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.88 36.01 0.36 -0.50 16 2 C 0.10 1.21 7.15 -82.51 -0.59 0.62 16 3 N -0.50 -6.06 11.20 -10.64 -0.12 -6.18 16 4 C 0.22 1.93 13.01 -90.57 -1.18 0.75 16 5 N -0.55 -4.82 6.07 -10.79 -0.07 -4.89 16 6 H 0.42 2.57 8.32 -40.82 -0.34 2.23 16 7 C -0.09 -1.10 7.08 -82.15 -0.58 -1.68 16 8 C 0.59 7.73 7.79 -12.81 -0.10 7.63 16 9 O -0.53 -8.14 14.82 5.21 0.08 -8.07 16 10 N -0.72 -8.31 5.51 -62.77 -0.35 -8.66 16 11 C 0.17 2.08 5.10 -5.20 -0.03 2.06 16 12 C -0.13 -1.77 5.26 -104.47 -0.55 -2.32 16 13 C -0.12 -1.53 9.65 -39.69 -0.38 -1.91 16 14 C -0.13 -1.78 10.05 -39.67 -0.40 -2.18 16 15 C -0.11 -1.81 9.62 -39.46 -0.38 -2.19 16 16 C -0.08 -1.42 5.82 -104.55 -0.61 -2.03 16 17 C -0.05 -0.78 5.76 -104.61 -0.60 -1.38 16 18 C -0.10 -1.64 5.24 -28.04 -0.15 -1.79 16 19 C 0.14 2.82 6.52 -3.75 -0.02 2.80 16 20 N -0.59 -14.13 2.97 -173.94 -0.52 -14.64 16 21 C -0.25 -6.55 9.69 -15.06 -0.15 -6.69 16 22 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 23 C 0.00 0.04 4.99 -17.43 -0.09 -0.04 16 24 N -0.91 -25.07 11.09 55.49 0.62 -24.46 16 25 Si 0.90 20.80 29.58 -169.99 -5.03 15.77 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 C 0.20 4.64 4.85 -5.04 -0.02 4.62 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.05 6.49 -51.93 -0.34 0.71 16 33 H 0.22 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.40 4.08 7.71 -40.82 -0.31 3.76 16 35 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.08 1.08 6.34 -51.93 -0.33 0.75 16 37 H 0.11 1.23 8.03 -52.49 -0.42 0.81 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.83 8.05 -52.49 -0.42 1.41 16 40 H 0.06 0.95 6.25 -51.93 -0.32 0.63 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 2.43 6.34 -51.93 -0.33 2.10 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.90 376.52 -11.33 -43.24 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.15 Total: 6.46 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -5.47 Total: -4.25 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.43 Total: -58.83 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.90 -11.33 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051307834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.609 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds