Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35363 * 127.25413 * 2 1 4 4 N 1.35029 * 107.23153 * 179.97438 * 3 2 1 5 5 H 0.97001 * 124.88965 * 180.02562 * 4 3 2 6 6 N 1.28474 * 110.23048 * 359.75089 * 4 3 2 7 7 C 1.31811 * 110.07130 * 0.41457 * 6 4 3 8 8 C 1.47709 * 126.51521 * 179.85294 * 7 6 4 9 9 O 1.21566 * 119.99696 * 179.68861 * 8 7 6 10 10 N 1.34775 * 120.00379 * 359.69463 * 8 7 6 11 11 C 1.46500 * 120.00241 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46981 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.77059 * 295.75037 * 12 11 10 14 14 C 1.52796 * 109.77344 * 175.00443 * 12 11 10 15 15 C 1.50600 * 110.85963 * 192.94401 * 14 12 11 16 16 C 1.38983 * 117.61360 * 199.59257 * 15 14 12 17 17 C 1.37901 * 120.58942 * 180.46426 * 16 15 14 18 18 C 1.38272 * 119.82631 * 0.03275 * 17 16 15 19 19 C 1.37958 * 119.71154 * 359.76834 * 18 17 16 20 20 C 1.37680 * 122.87234 * 19.69333 * 15 14 12 21 21 C 1.50807 * 122.35804 * 359.23870 * 20 15 14 22 22 N 1.46687 * 109.66633 * 11.08971 * 21 20 15 23 23 C 1.36942 * 121.34521 * 135.68968 * 22 21 20 24 24 H 1.07995 * 120.00030 * 207.49829 * 23 22 21 25 25 C 1.38810 * 119.99954 * 27.49658 * 23 22 21 26 26 N 1.31625 * 120.00157 * 10.32625 * 25 23 22 27 27 Si 1.86806 * 119.99936 * 190.32207 * 25 23 22 28 28 H 1.48497 * 109.46983 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46714 * 120.00144 * 27 25 23 30 30 H 1.48497 * 109.47063 * 240.00205 * 27 25 23 31 31 H 1.09002 * 109.46851 * 270.02441 * 1 2 3 32 32 H 1.09001 * 109.46787 * 30.01952 * 1 2 3 33 33 H 1.08995 * 109.47698 * 150.02314 * 1 2 3 34 34 H 1.07996 * 126.38147 * 359.96622 * 3 2 1 35 35 H 0.97004 * 119.99677 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46558 * 60.00407 * 11 10 8 37 37 H 1.08998 * 109.47496 * 300.00304 * 11 10 8 38 38 H 1.08996 * 109.19654 * 313.29734 * 14 12 11 39 39 H 1.08994 * 109.19917 * 72.58812 * 14 12 11 40 40 H 1.07999 * 119.70270 * 0.47676 * 16 15 14 41 41 H 1.07997 * 120.08831 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.14511 * 179.78134 * 18 17 16 43 43 H 1.08002 * 119.74139 * 180.02562 * 19 18 17 44 44 H 1.09004 * 109.43578 * 251.03259 * 21 20 15 45 45 H 1.08996 * 109.43838 * 131.15267 * 21 20 15 46 46 H 0.97000 * 119.99737 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0774 0.0000 4 7 3.5951 0.6151 0.0006 5 1 4.3888 1.1727 0.0011 6 7 3.5998 -0.6696 0.0062 7 6 2.3634 -1.1265 0.0006 8 6 1.9504 -2.5447 0.0012 9 8 0.7697 -2.8339 0.0013 10 7 2.8826 -3.5181 0.0017 11 6 2.4730 -4.9246 0.0028 12 6 3.7154 -5.8176 0.0038 13 1 4.2750 -5.6717 -0.9201 14 6 3.2991 -7.2823 0.1302 15 6 4.4868 -8.1517 0.4488 16 6 4.3764 -9.5129 0.1906 17 6 5.4231 -10.3669 0.4679 18 6 6.5937 -9.8673 1.0082 19 6 6.7076 -8.5160 1.2617 20 6 5.6560 -7.6546 0.9791 21 6 5.8506 -6.1878 1.2706 22 7 4.5663 -5.4878 1.1591 23 6 4.1750 -4.5645 2.0917 24 1 3.1244 -4.3899 2.2710 25 6 5.1287 -3.8529 2.8065 26 7 6.3953 -3.9116 2.4532 27 14 4.6145 -2.8119 4.2699 28 1 3.1452 -2.9148 4.4587 29 1 5.3054 -3.2989 5.4909 30 1 4.9844 -1.3949 4.0238 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8901 -0.5134 34 1 2.0222 2.1136 -0.0005 35 1 3.8248 -3.2873 0.0013 36 1 1.8779 -5.1304 -0.8869 37 1 1.8782 -5.1292 0.8930 38 1 2.5611 -7.3777 0.9267 39 1 2.8558 -7.6113 -0.8095 40 1 3.4628 -9.9052 -0.2310 41 1 5.3287 -11.4232 0.2637 42 1 7.4153 -10.5319 1.2306 43 1 7.6219 -8.1251 1.6833 44 1 6.5568 -5.7663 0.5552 45 1 6.2428 -6.0676 2.2804 46 1 7.0616 -3.4140 2.9526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054041232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 86.967311 kcal Electronic energy + Delta-G solvation = -29857.480228 eV Core-core repulsion = 25942.057732 eV Total energy + Delta-G solvation = -3915.422497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39607 -39.40804 -38.61485 -36.48491 -33.73623 -32.88061 -32.75599 -31.43410 -31.13067 -30.03319 -28.85076 -26.94520 -25.74655 -25.51494 -23.26913 -22.73284 -21.51557 -21.02386 -20.28232 -19.52017 -18.94034 -18.00318 -16.84843 -16.20424 -15.96679 -15.58097 -15.35226 -15.03804 -14.52919 -14.25717 -14.19570 -13.82237 -13.64873 -13.39499 -12.98429 -12.90268 -12.76246 -12.69306 -12.55885 -12.41187 -12.07483 -11.90385 -11.64185 -11.50883 -11.08064 -10.88485 -10.80686 -10.67815 -10.50280 -10.44713 -10.15361 -9.95413 -9.68471 -9.40745 -9.16592 -8.72788 -8.65479 -8.23374 -8.16221 -7.81410 -6.76392 -5.86014 -3.28901 1.89602 1.97410 1.97698 2.31461 3.08330 3.33215 3.41363 3.45871 3.84549 4.00762 4.31857 4.43221 4.81972 4.94634 5.19132 5.26736 5.34324 5.39418 5.40286 5.49874 5.58415 5.61737 5.71920 5.75891 5.94181 5.95870 5.98957 6.06432 6.09856 6.15908 6.23065 6.34187 6.36245 6.39227 6.58595 6.65991 6.71383 6.86041 6.97090 6.99549 7.14396 7.17998 7.21244 7.24775 7.53990 7.68078 7.78956 8.03110 8.31460 8.41985 8.91331 9.13552 9.73224 10.30713 11.23409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.003723 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.306115 B = 7518.766930 C = 8707.325645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.152 4.152 3 C -0.031 4.031 4 N -0.386 5.386 5 H 0.444 0.556 6 N -0.241 5.241 7 C -0.006 4.006 8 C 0.596 3.404 9 O -0.555 6.555 10 N -0.679 5.679 11 C 0.136 3.864 12 C 0.157 3.843 13 H 0.042 0.958 14 C -0.090 4.090 15 C -0.067 4.067 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.207 3.793 22 N -0.588 5.588 23 C -0.242 4.242 24 H 0.072 0.928 25 C 0.012 3.988 26 N -0.904 5.904 27 Si 0.896 3.104 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.422 0.578 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.042 0.958 45 H 0.099 0.901 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 2.349 -6.505 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.162 4.162 3 C -0.175 4.175 4 N -0.099 5.099 5 H 0.288 0.712 6 N -0.077 5.077 7 C -0.167 4.167 8 C 0.379 3.621 9 O -0.434 6.434 10 N -0.329 5.329 11 C 0.011 3.989 12 C 0.050 3.950 13 H 0.060 0.940 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.078 4.078 21 C 0.082 3.918 22 N -0.311 5.311 23 C -0.371 4.371 24 H 0.090 0.910 25 C -0.187 4.187 26 N -0.549 5.549 27 Si 0.727 3.273 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.219 1.219 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.196 0.804 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.059 0.941 45 H 0.117 0.883 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.272 1.856 -6.406 7.429 hybrid contribution 0.138 1.227 1.023 1.603 sum -3.135 3.083 -5.384 6.951 Atomic orbital electron populations 1.20135 0.88357 1.02687 1.02194 1.20378 0.97435 0.90614 1.07776 1.22611 0.84487 1.00258 1.10099 1.43268 1.08336 1.04682 1.53641 0.71183 1.73750 1.23135 0.93260 1.17518 1.22021 0.89223 0.95498 1.09980 1.16831 0.85462 0.82665 0.77102 1.90694 1.17079 1.82861 1.52723 1.45779 1.10957 1.05217 1.70967 1.21291 0.96397 0.80097 1.01072 1.20716 0.91257 0.91219 0.91812 0.94033 1.20882 0.95450 0.95899 1.00730 1.19488 0.95291 0.93267 0.98713 1.21121 0.98476 0.93375 1.01603 1.20840 0.94297 0.98836 1.01934 1.20947 0.97640 0.95466 1.00848 1.21116 0.98934 0.93163 1.01010 1.21039 0.92376 0.99393 0.95012 1.19800 0.87704 0.82031 1.02266 1.44034 1.18310 1.45508 1.23256 1.19130 0.92203 1.12780 1.12978 0.91021 1.24959 0.95756 0.97968 1.00000 1.69958 1.00204 1.44411 1.40315 0.86292 0.78189 0.80021 0.82838 1.20273 1.21677 1.21858 0.91704 0.92438 0.89872 0.80367 0.73989 0.92219 0.91280 0.90751 0.91840 0.87096 0.87171 0.87046 0.86505 0.94080 0.88348 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.93 36.01 0.36 -0.65 16 2 C -0.15 -2.33 6.25 -104.40 -0.65 -2.98 16 3 C -0.03 -0.37 11.97 -17.17 -0.21 -0.57 16 4 N -0.39 -5.05 6.83 30.47 0.21 -4.84 16 5 H 0.44 4.06 8.96 -190.44 -1.71 2.35 16 6 N -0.24 -4.29 11.92 33.42 0.40 -3.89 16 7 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 8 C 0.60 12.14 7.82 -12.39 -0.10 12.04 16 9 O -0.56 -11.95 15.11 5.31 0.08 -11.87 16 10 N -0.68 -13.74 4.08 -61.30 -0.25 -13.99 16 11 C 0.14 2.56 4.43 -4.04 -0.02 2.54 16 12 C 0.16 3.03 2.99 -67.64 -0.20 2.83 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.09 -1.55 5.21 -28.04 -0.15 -1.69 16 15 C -0.07 -1.23 5.76 -104.60 -0.60 -1.83 16 16 C -0.13 -2.02 9.59 -39.43 -0.38 -2.40 16 17 C -0.14 -2.10 10.04 -39.69 -0.40 -2.50 16 18 C -0.13 -2.02 10.05 -39.67 -0.40 -2.42 16 19 C -0.12 -2.18 9.62 -39.46 -0.38 -2.56 16 20 C -0.08 -1.51 5.82 -104.55 -0.61 -2.12 16 21 C 0.21 4.69 4.81 -5.04 -0.02 4.67 16 22 N -0.59 -13.40 2.86 -166.39 -0.48 -13.88 16 23 C -0.24 -6.08 7.11 -15.06 -0.11 -6.19 16 24 H 0.07 1.88 6.16 -52.49 -0.32 1.55 16 25 C 0.01 0.31 5.10 -17.43 -0.09 0.22 16 26 N -0.90 -24.33 10.99 55.49 0.61 -23.72 16 27 Si 0.90 21.78 29.57 -169.99 -5.03 16.75 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.25 6.72 -51.93 -0.35 0.90 16 34 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.42 9.17 7.21 -40.82 -0.29 8.87 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.40 7.25 -51.93 -0.38 1.02 16 38 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 39 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 40 H 0.11 1.50 8.05 -52.49 -0.42 1.07 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 2.50 6.40 -51.93 -0.33 2.17 16 46 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -30.90 374.46 -10.94 -41.84 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.58 Total: 12.27 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.54 Total: -4.32 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.49 Total: -60.32 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.90 -10.94 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.808 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds