Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35365 * 127.24916 * 2 1 4 4 N 1.35037 * 107.23217 * 180.24513 * 3 2 1 5 5 H 0.96992 * 124.88505 * 179.76450 * 4 3 2 6 6 N 1.28470 * 110.22546 * 359.76539 * 4 3 2 7 7 C 1.31805 * 110.07877 * 0.02562 * 6 4 3 8 8 C 1.47710 * 126.52227 * 179.97438 * 7 6 4 9 9 O 1.21567 * 120.00394 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99601 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99755 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47280 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.76529 * 65.73483 * 12 11 10 14 14 C 1.52784 * 109.81881 * 186.50725 * 12 11 10 15 15 C 1.50598 * 110.85252 * 167.19661 * 14 12 11 16 16 C 1.38975 * 117.63510 * 160.01400 * 15 14 12 17 17 C 1.37913 * 120.57604 * 178.86120 * 16 15 14 18 18 C 1.38265 * 119.82904 * 359.97438 * 17 16 15 19 19 C 1.37962 * 119.71861 * 0.26299 * 18 17 16 20 20 C 1.37666 * 122.83874 * 339.36768 * 15 14 12 21 21 C 1.50811 * 122.33751 * 2.10860 * 20 15 14 22 22 N 1.46676 * 109.69072 * 348.05761 * 21 20 15 23 23 C 1.36939 * 121.31644 * 224.41475 * 22 21 20 24 24 H 1.08004 * 119.99874 * 151.82638 * 23 22 21 25 25 C 1.38807 * 120.00009 * 331.81412 * 23 22 21 26 26 N 1.31619 * 119.99848 * 349.11669 * 25 23 22 27 27 Si 1.86800 * 120.00110 * 169.11041 * 25 23 22 28 28 H 1.48503 * 109.47036 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47183 * 120.00476 * 27 25 23 30 30 H 1.48500 * 109.47311 * 240.00572 * 27 25 23 31 31 H 1.09006 * 109.46652 * 270.13257 * 1 2 3 32 32 H 1.08996 * 109.47526 * 30.13590 * 1 2 3 33 33 H 1.09002 * 109.46726 * 150.13950 * 1 2 3 34 34 H 1.08003 * 126.38536 * 0.04420 * 3 2 1 35 35 H 0.97001 * 120.00391 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46850 * 60.00100 * 11 10 8 37 37 H 1.09002 * 109.47167 * 300.00327 * 11 10 8 38 38 H 1.09007 * 109.20374 * 46.84239 * 14 12 11 39 39 H 1.09002 * 109.20490 * 287.55244 * 14 12 11 40 40 H 1.07994 * 119.71208 * 358.84399 * 16 15 14 41 41 H 1.07995 * 120.08333 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.13956 * 180.27722 * 18 17 16 43 43 H 1.07995 * 119.75235 * 180.02562 * 19 18 17 44 44 H 1.09001 * 109.43419 * 108.11787 * 21 20 15 45 45 H 1.08998 * 109.43961 * 228.02947 * 21 20 15 46 46 H 0.97008 * 119.99824 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0055 5 1 4.3887 1.1730 -0.0100 6 7 3.5998 -0.6694 -0.0039 7 6 2.3635 -1.1264 0.0020 8 6 1.9506 -2.5446 0.0051 9 8 0.7699 -2.8339 0.0102 10 7 2.8829 -3.5179 0.0022 11 6 2.4734 -4.9245 0.0047 12 6 3.7158 -5.8174 0.0012 13 1 4.2642 -5.6895 0.9345 14 6 3.3024 -7.2795 -0.1592 15 6 4.4953 -8.1421 -0.4767 16 6 4.3856 -9.5069 -0.2386 17 6 5.4326 -10.3562 -0.5294 18 6 6.6025 -9.8480 -1.0631 19 6 6.7160 -8.4929 -1.2960 20 6 5.6648 -7.6362 -0.9977 21 6 5.8643 -6.1630 -1.2511 22 7 4.5801 -5.4636 -1.1368 23 6 4.2004 -4.5187 -2.0523 24 1 3.1522 -4.3457 -2.2467 25 6 5.1626 -3.7830 -2.7303 26 7 6.4210 -3.8347 -2.3478 27 14 4.6717 -2.7197 -4.1856 28 1 3.2084 -2.8341 -4.4109 29 1 5.0195 -1.3038 -3.9037 30 1 5.3969 -3.1755 -5.3987 31 1 -0.3633 0.0024 1.0277 32 1 -0.3634 0.8887 -0.5159 33 1 -0.3633 -0.8913 -0.5117 34 1 2.0220 2.1138 0.0007 35 1 3.8251 -3.2870 -0.0015 36 1 1.8751 -5.1302 -0.8830 37 1 1.8818 -5.1291 0.8970 38 1 2.5761 -7.3601 -0.9680 39 1 2.8455 -7.6267 0.7676 40 1 3.4727 -9.9059 0.1781 41 1 5.3389 -11.4154 -0.3407 42 1 7.4239 -10.5091 -1.2969 43 1 7.6293 -8.0955 -1.7132 44 1 6.5630 -5.7603 -0.5178 45 1 6.2674 -6.0186 -2.2534 46 1 7.0935 -3.3209 -2.8219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054041233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 87.364648 kcal Electronic energy + Delta-G solvation = -29887.761126 eV Core-core repulsion = 25972.355859 eV Total energy + Delta-G solvation = -3915.405267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38213 -39.41232 -38.60512 -36.48816 -33.71284 -32.88830 -32.74658 -31.43559 -31.12371 -30.02756 -28.85849 -26.93434 -25.74552 -25.51014 -23.26083 -22.73343 -21.52057 -21.02263 -20.26995 -19.49645 -18.94954 -17.99033 -16.84644 -16.19896 -15.95251 -15.58146 -15.33192 -15.04225 -14.53093 -14.25574 -14.19119 -13.83108 -13.60736 -13.40941 -12.97680 -12.89973 -12.75264 -12.68867 -12.56562 -12.40742 -12.09499 -11.89482 -11.62954 -11.51991 -11.07507 -10.88525 -10.80939 -10.68238 -10.48890 -10.44486 -10.16092 -9.95559 -9.69117 -9.39509 -9.15199 -8.72611 -8.64609 -8.23199 -8.14563 -7.82124 -6.75680 -5.86736 -3.29855 1.89185 1.96951 1.99303 2.32575 3.09701 3.32818 3.41006 3.45613 3.86025 4.02319 4.31435 4.42983 4.83432 4.95777 5.19074 5.26573 5.34007 5.39893 5.40891 5.49531 5.59456 5.61757 5.72842 5.76005 5.93927 5.95366 5.98842 6.06458 6.10204 6.16562 6.22700 6.34202 6.37956 6.39587 6.58166 6.65545 6.72794 6.86212 6.96696 6.98937 7.15793 7.17171 7.21814 7.24970 7.53343 7.66970 7.78828 8.04822 8.31325 8.44365 8.93383 9.12997 9.72650 10.30541 11.22629 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003736 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.759163 B = 7493.804179 C = 8689.947235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.152 4.152 3 C -0.031 4.031 4 N -0.386 5.386 5 H 0.444 0.556 6 N -0.240 5.240 7 C -0.006 4.006 8 C 0.595 3.405 9 O -0.556 6.556 10 N -0.678 5.678 11 C 0.136 3.864 12 C 0.157 3.843 13 H 0.042 0.958 14 C -0.090 4.090 15 C -0.067 4.067 16 C -0.127 4.127 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.076 4.076 21 C 0.208 3.792 22 N -0.588 5.588 23 C -0.243 4.243 24 H 0.072 0.928 25 C 0.013 3.987 26 N -0.903 5.903 27 Si 0.896 3.104 28 H -0.278 1.278 29 H -0.292 1.292 30 H -0.290 1.290 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.423 0.577 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.042 0.958 45 H 0.096 0.904 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 2.138 6.133 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.162 4.162 3 C -0.175 4.175 4 N -0.099 5.099 5 H 0.288 0.712 6 N -0.076 5.076 7 C -0.167 4.167 8 C 0.379 3.621 9 O -0.435 6.435 10 N -0.329 5.329 11 C 0.012 3.988 12 C 0.050 3.950 13 H 0.060 0.940 14 C -0.129 4.129 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.078 4.078 21 C 0.082 3.918 22 N -0.311 5.311 23 C -0.372 4.372 24 H 0.090 0.910 25 C -0.186 4.186 26 N -0.547 5.547 27 Si 0.726 3.274 28 H -0.203 1.203 29 H -0.219 1.219 30 H -0.217 1.217 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.196 0.804 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.287 1.650 6.044 7.075 hybrid contribution 0.151 1.242 -0.988 1.594 sum -3.136 2.892 5.057 6.616 Atomic orbital electron populations 1.20133 0.88370 1.02857 1.01998 1.20378 0.97425 0.90621 1.07811 1.22614 0.84497 1.00251 1.10122 1.43270 1.08328 1.04694 1.53650 0.71196 1.73755 1.23125 0.93228 1.17452 1.22022 0.89218 0.95498 1.09979 1.16837 0.85463 0.82683 0.77150 1.90692 1.17098 1.82861 1.52817 1.45824 1.11059 1.05156 1.70827 1.21281 0.96358 0.80181 1.01018 1.20719 0.91150 0.91164 0.91978 0.94039 1.20881 0.95344 0.95929 1.00790 1.19487 0.95297 0.93234 0.98751 1.21123 0.98483 0.93352 1.01605 1.20843 0.94297 0.98836 1.01922 1.20947 0.97645 0.95404 1.00898 1.21117 0.98908 0.93170 1.01027 1.21030 0.92411 0.99390 0.94976 1.19777 0.87772 0.81984 1.02226 1.44024 1.17915 1.43941 1.25226 1.19123 0.92353 1.11183 1.14590 0.91048 1.24964 0.95870 0.97806 0.99936 1.69965 1.00437 1.43665 1.40634 0.86302 0.78151 0.80153 0.82786 1.20267 1.21855 1.21672 0.91783 0.92431 0.89834 0.80382 0.73806 0.91360 0.92235 0.90739 0.91844 0.87085 0.87165 0.87043 0.86504 0.94004 0.88570 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.93 36.01 0.36 -0.66 16 2 C -0.15 -2.35 6.25 -104.40 -0.65 -3.00 16 3 C -0.03 -0.38 11.97 -17.17 -0.21 -0.58 16 4 N -0.39 -5.12 6.83 30.47 0.21 -4.91 16 5 H 0.44 4.14 8.96 -190.45 -1.71 2.44 16 6 N -0.24 -4.32 11.92 33.42 0.40 -3.92 16 7 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 8 C 0.59 12.19 7.82 -12.39 -0.10 12.09 16 9 O -0.56 -12.01 15.12 5.31 0.08 -11.93 16 10 N -0.68 -13.80 4.01 -61.29 -0.25 -14.05 16 11 C 0.14 2.57 4.45 -4.04 -0.02 2.55 16 12 C 0.16 3.03 3.02 -67.65 -0.20 2.83 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.09 -1.54 5.21 -28.04 -0.15 -1.69 16 15 C -0.07 -1.22 5.76 -104.61 -0.60 -1.83 16 16 C -0.13 -2.02 9.59 -39.43 -0.38 -2.40 16 17 C -0.14 -2.09 10.04 -39.69 -0.40 -2.49 16 18 C -0.13 -2.01 10.05 -39.67 -0.40 -2.41 16 19 C -0.12 -2.18 9.62 -39.46 -0.38 -2.56 16 20 C -0.08 -1.51 5.82 -104.55 -0.61 -2.12 16 21 C 0.21 4.69 4.80 -5.04 -0.02 4.67 16 22 N -0.59 -13.38 2.85 -166.40 -0.47 -13.86 16 23 C -0.24 -6.10 6.95 -15.06 -0.10 -6.21 16 24 H 0.07 1.87 6.19 -52.48 -0.32 1.54 16 25 C 0.01 0.35 5.08 -17.43 -0.09 0.26 16 26 N -0.90 -24.20 11.07 55.49 0.61 -23.59 16 27 Si 0.90 21.72 29.57 -169.99 -5.03 16.70 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.31 6.72 -51.93 -0.35 0.96 16 34 H 0.18 1.34 8.06 -52.48 -0.42 0.91 16 35 H 0.42 9.28 7.06 -40.82 -0.29 8.99 16 36 H 0.07 1.38 7.32 -51.93 -0.38 1.00 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.31 8.02 -51.93 -0.42 0.89 16 39 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.11 1.50 8.05 -52.49 -0.42 1.07 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 2.43 6.46 -51.93 -0.34 2.10 16 46 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -30.79 374.32 -10.93 -41.72 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.58 Total: 12.44 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -4.54 Total: -4.24 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.50 Total: -60.32 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.79 -10.93 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054041233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.085 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds