Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35568 * 125.82513 * 2 1 4 4 N 1.35405 * 107.16195 * 180.15685 * 3 2 1 5 5 H 0.96996 * 126.43969 * 179.84193 * 4 3 2 6 6 C 1.36671 * 107.12089 * 359.58539 * 4 3 2 7 7 C 1.47404 * 125.86792 * 180.28277 * 6 4 3 8 8 O 1.21608 * 119.99424 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00252 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99908 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46787 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.77169 * 64.25876 * 11 10 9 13 13 C 1.52787 * 109.76875 * 184.99922 * 11 10 9 14 14 C 1.50601 * 110.85822 * 167.05346 * 13 11 10 15 15 C 1.38985 * 117.61765 * 159.96211 * 14 13 11 16 16 C 1.37909 * 120.58145 * 179.50518 * 15 14 13 17 17 C 1.38260 * 119.82673 * 359.94303 * 16 15 14 18 18 C 1.37958 * 119.72045 * 0.24245 * 17 16 15 19 19 C 1.37669 * 122.86823 * 339.86489 * 14 13 11 20 20 C 1.50814 * 122.33970 * 1.45361 * 19 14 13 21 21 N 1.46681 * 109.67532 * 348.42811 * 20 19 14 22 22 C 1.36940 * 121.34118 * 224.44058 * 21 20 19 23 23 H 1.07999 * 119.99979 * 151.45217 * 22 21 20 24 24 C 1.38808 * 120.00057 * 331.46487 * 22 21 20 25 25 N 1.31617 * 120.00431 * 163.50197 * 24 22 21 26 26 Si 1.86807 * 119.99925 * 343.50287 * 24 22 21 27 27 H 1.48506 * 109.47125 * 86.60592 * 26 24 22 28 28 H 1.48497 * 109.46934 * 206.60564 * 26 24 22 29 29 H 1.48504 * 109.46825 * 326.61087 * 26 24 22 30 30 N 1.31624 * 108.26954 * 0.25965 * 6 4 3 31 31 H 1.09002 * 109.47454 * 270.28649 * 1 2 3 32 32 H 1.09002 * 109.47273 * 30.28754 * 1 2 3 33 33 H 1.09003 * 109.47496 * 150.28323 * 1 2 3 34 34 H 1.08004 * 126.42207 * 0.03853 * 3 2 1 35 35 H 0.96997 * 119.99963 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.46830 * 299.99962 * 10 9 7 37 37 H 1.08997 * 109.46852 * 60.00142 * 10 9 7 38 38 H 1.08997 * 109.20051 * 287.41276 * 13 11 10 39 39 H 1.08997 * 109.19702 * 46.70198 * 13 11 10 40 40 H 1.07997 * 119.71379 * 359.50954 * 15 14 13 41 41 H 1.07997 * 120.08864 * 179.97438 * 16 15 14 42 42 H 1.07999 * 120.14321 * 180.26718 * 17 16 15 43 43 H 1.07999 * 119.75527 * 180.02562 * 18 17 16 44 44 H 1.08997 * 109.43737 * 108.49238 * 20 19 14 45 45 H 1.09000 * 109.43223 * 228.41211 * 20 19 14 46 46 H 0.96994 * 120.00443 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 -0.0035 5 1 4.3788 1.2208 -0.0066 6 6 3.5465 -0.7003 0.0038 7 6 4.7174 -1.5958 0.0091 8 8 5.8401 -1.1285 0.0066 9 7 4.5436 -2.9322 0.0167 10 6 5.7074 -3.8222 0.0226 11 6 5.2362 -5.2777 0.0301 12 1 4.6996 -5.4964 -0.8931 13 6 6.4397 -6.2098 0.1615 14 6 5.9985 -7.6126 0.4864 15 6 6.8909 -8.6456 0.2248 16 6 6.5539 -9.9525 0.5081 17 6 5.3187 -10.2404 1.0584 18 6 4.4294 -9.2175 1.3157 19 6 4.7653 -7.9020 1.0256 20 6 3.7373 -6.8350 1.3070 21 7 4.3551 -5.5101 1.1865 22 6 4.1219 -4.5286 2.1126 23 1 4.8707 -3.7731 2.2989 24 6 2.9232 -4.5051 2.8121 25 7 2.8155 -3.7864 3.9095 26 14 1.4627 -5.4935 2.1960 27 1 1.5421 -6.8779 2.7275 28 1 0.2035 -4.8569 2.6591 29 1 1.4815 -5.5314 0.7115 30 7 2.2860 -1.0792 0.0058 31 1 -0.3634 0.0051 1.0276 32 1 -0.3634 0.8874 -0.5183 33 1 -0.3634 -0.8925 -0.5094 34 1 1.9711 2.1278 0.0006 35 1 3.6481 -3.3049 0.0191 36 1 6.3087 -3.6398 -0.8682 37 1 6.3076 -3.6295 0.9118 38 1 6.9923 -6.2163 -0.7780 39 1 7.0902 -5.8454 0.9566 40 1 7.8567 -8.4229 -0.2042 41 1 7.2533 -10.7490 0.3012 42 1 5.0512 -11.2616 1.2864 43 1 3.4645 -9.4417 1.7459 44 1 2.9202 -6.9207 0.5907 45 1 3.3491 -6.9630 2.3174 46 1 1.9778 -3.7696 4.3980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054055055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 76.775058 kcal Electronic energy + Delta-G solvation = -29837.947304 eV Core-core repulsion = 25922.082838 eV Total energy + Delta-G solvation = -3915.864466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97227 -39.66883 -38.74187 -36.72773 -33.98852 -33.04462 -32.85277 -31.76832 -31.17020 -30.35063 -29.38843 -27.09625 -25.69637 -25.44198 -23.34039 -22.80560 -21.73413 -21.05796 -20.13565 -19.93497 -19.31305 -18.23002 -16.67768 -16.40730 -15.93039 -15.56162 -15.43696 -15.10188 -14.95141 -14.53314 -14.41885 -13.95159 -13.89032 -13.72912 -13.38748 -12.90968 -12.82822 -12.67822 -12.65666 -12.49144 -12.32181 -12.12656 -12.07936 -11.79650 -11.45206 -11.15657 -11.00771 -10.67384 -10.47961 -10.22684 -9.96190 -9.92741 -9.84227 -9.75550 -9.51175 -8.74768 -8.46495 -8.41761 -8.12238 -8.09953 -7.03179 -5.95330 -3.37584 1.69541 1.70560 1.75019 2.83290 2.94483 3.30032 3.47368 3.49801 3.81859 3.97727 4.10601 4.50172 4.60668 4.74279 5.06004 5.12577 5.15172 5.29374 5.30132 5.31784 5.34960 5.42045 5.58443 5.68502 5.77102 5.82772 5.85250 5.89015 5.93826 6.00252 6.11685 6.12600 6.16471 6.24500 6.32007 6.36408 6.37577 6.51725 6.71326 6.79482 6.81626 6.84830 7.00144 7.12238 7.35287 7.37714 7.85058 7.95815 8.27979 8.31639 8.70246 8.85341 9.66718 10.01696 11.19653 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.003798 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.091978 B = 7369.936759 C = 8612.006231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.002 4.002 3 C -0.037 4.037 4 N -0.529 5.529 5 H 0.427 0.573 6 C 0.165 3.835 7 C 0.602 3.398 8 O -0.566 6.566 9 N -0.663 5.663 10 C 0.137 3.863 11 C 0.160 3.840 12 H 0.048 0.952 13 C -0.091 4.091 14 C -0.059 4.059 15 C -0.126 4.126 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.075 4.075 20 C 0.156 3.844 21 N -0.601 5.601 22 C -0.262 4.262 23 H 0.092 0.908 24 C 0.036 3.964 25 N -0.900 5.900 26 Si 0.881 3.119 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.269 1.269 30 N -0.430 5.430 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.181 0.819 35 H 0.423 0.577 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 0.601 -9.883 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C -0.175 4.175 4 N -0.130 5.130 5 H 0.265 0.735 6 C -0.097 4.097 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.312 5.312 10 C 0.013 3.987 11 C 0.054 3.946 12 H 0.066 0.934 13 C -0.131 4.131 14 C -0.059 4.059 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.077 4.077 20 C 0.031 3.969 21 N -0.325 5.325 22 C -0.390 4.390 23 H 0.109 0.891 24 C -0.164 4.164 25 N -0.542 5.542 26 Si 0.711 3.289 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.194 1.194 30 N -0.153 5.153 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.198 0.802 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.646 0.148 -9.727 9.867 hybrid contribution -0.722 0.286 0.091 0.782 sum 0.925 0.434 -9.636 9.690 Atomic orbital electron populations 1.20034 0.87493 1.02467 1.02475 1.20878 0.96908 0.88142 1.07721 1.22572 0.83251 1.00655 1.11035 1.42861 1.08857 1.07661 1.53640 0.73451 1.22750 0.93958 0.82035 1.10981 1.16379 0.85154 0.82395 0.77550 1.90768 1.23776 1.76431 1.53634 1.45516 1.12039 1.03787 1.69896 1.21339 0.87700 0.88027 1.01632 1.20743 0.91137 0.91693 0.91070 0.93431 1.20877 0.98871 0.92026 1.01293 1.19455 0.93372 0.95064 0.98000 1.21142 0.99103 0.92693 1.01425 1.20907 0.96874 0.96314 1.01034 1.20951 0.94522 0.98598 1.00565 1.21110 0.99726 0.92439 1.00924 1.20456 0.95649 0.94949 0.96599 1.20415 0.92389 0.83360 1.00727 1.44349 1.54997 1.08413 1.24768 1.18784 1.00101 1.06483 1.13631 0.89051 1.25218 0.97175 0.97191 0.96808 1.69770 1.26297 1.42588 1.15545 0.87079 0.83523 0.78610 0.79642 1.21744 1.23062 1.19400 1.70201 0.99256 1.30541 1.15320 0.91212 0.91486 0.91061 0.80163 0.73808 0.91731 0.90624 0.91296 0.90155 0.86669 0.86800 0.86709 0.86554 0.94161 0.89567 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 36.00 0.38 -0.45 16 2 C 0.00 -0.04 7.07 -83.00 -0.59 -0.62 16 3 C -0.04 -0.47 11.91 -16.93 -0.20 -0.67 16 4 N -0.53 -7.68 6.14 -10.78 -0.07 -7.75 16 5 H 0.43 5.05 8.96 -40.82 -0.37 4.69 16 6 C 0.16 3.08 7.95 -154.51 -1.23 1.86 16 7 C 0.60 12.10 7.81 -12.53 -0.10 12.00 16 8 O -0.57 -11.94 17.09 5.27 0.09 -11.85 16 9 N -0.66 -13.20 4.09 -61.39 -0.25 -13.45 16 10 C 0.14 2.47 4.43 -4.04 -0.02 2.45 16 11 C 0.16 2.90 3.00 -67.64 -0.20 2.70 16 12 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 13 C -0.09 -1.45 5.21 -28.04 -0.15 -1.60 16 14 C -0.06 -0.99 5.76 -104.60 -0.60 -1.59 16 15 C -0.13 -1.82 9.59 -39.43 -0.38 -2.20 16 16 C -0.13 -1.81 10.04 -39.69 -0.40 -2.21 16 17 C -0.13 -1.82 10.05 -39.68 -0.40 -2.22 16 18 C -0.12 -2.03 9.62 -39.46 -0.38 -2.41 16 19 C -0.07 -1.39 5.82 -104.55 -0.61 -2.00 16 20 C 0.16 3.30 3.97 -5.04 -0.02 3.28 16 21 N -0.60 -13.17 2.63 -166.39 -0.44 -13.60 16 22 C -0.26 -6.76 7.50 -15.06 -0.11 -6.87 16 23 H 0.09 2.59 6.41 -52.49 -0.34 2.26 16 24 C 0.04 1.00 5.30 -17.43 -0.09 0.91 16 25 N -0.90 -26.83 13.97 55.49 0.78 -26.05 16 26 Si 0.88 21.66 24.17 -169.99 -4.11 17.55 16 27 H -0.29 -6.88 6.47 56.52 0.37 -6.51 16 28 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 29 H -0.27 -6.41 6.58 56.52 0.37 -6.04 16 30 N -0.43 -8.37 10.89 -7.50 -0.08 -8.45 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.42 9.03 7.16 -40.82 -0.29 8.74 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.50 7.25 -51.93 -0.38 1.13 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 40 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16 41 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 44 H 0.04 0.86 6.36 -51.93 -0.33 0.53 16 45 H 0.09 2.00 5.11 -51.93 -0.27 1.73 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -32.84 371.30 -9.81 -42.66 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.23 Total: 14.99 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -5.10 Total: 0.37 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -0.06 Total: -69.31 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.11 Total: 17.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.84 -9.81 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054055055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.431 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds