Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38041 * 126.28894 * 2 1 4 4 C 1.47430 * 126.41905 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99854 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00289 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00224 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47438 * 180.02562 * 7 6 4 9 9 C 1.38248 * 120.02137 * 89.99648 * 8 7 6 10 10 C 1.38151 * 119.96320 * 180.02562 * 9 8 7 11 11 C 1.38445 * 120.10076 * 359.97438 * 10 9 8 12 12 C 1.38066 * 119.93497 * 0.02562 * 11 10 9 13 13 C 1.38151 * 120.01553 * 269.72915 * 8 7 6 14 14 C 1.50784 * 108.85965 * 180.02562 * 12 11 10 15 15 N 1.46633 * 107.69950 * 0.02562 * 14 12 11 16 16 C 1.36942 * 126.56169 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99885 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46980 * 89.99702 * 20 18 16 22 22 H 1.48493 * 109.47220 * 209.99721 * 20 18 16 23 23 H 1.48497 * 109.46919 * 329.99991 * 20 18 16 24 24 C 1.46634 * 106.87763 * 359.97438 * 15 14 12 25 25 C 1.41297 * 107.17057 * 179.97438 * 3 2 1 26 26 N 1.30445 * 108.02070 * 359.97438 * 25 3 2 27 27 N 1.34257 * 126.28965 * 179.68690 * 2 1 3 28 28 C 1.46500 * 125.75747 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46953 * 89.99995 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99593 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00223 * 1 2 3 32 32 H 0.97002 * 119.99644 * 0.02562 * 6 4 3 33 33 H 1.09003 * 109.46926 * 300.00066 * 7 6 4 34 34 H 1.09001 * 109.47312 * 59.99500 * 7 6 4 35 35 H 1.08004 * 120.02226 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.94591 * 180.02562 * 10 9 8 37 37 H 1.07992 * 119.94834 * 359.97438 * 13 8 7 38 38 H 1.08999 * 109.80891 * 119.54781 * 14 12 11 39 39 H 1.08996 * 109.80919 * 240.45433 * 14 12 11 40 40 H 0.97006 * 119.99879 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.81047 * 240.45499 * 24 15 14 42 42 H 1.08990 * 109.81319 * 119.54749 * 24 15 14 43 43 H 1.07996 * 125.98634 * 179.97438 * 25 3 2 44 44 H 1.08996 * 109.46949 * 89.99982 * 28 27 2 45 45 H 1.08990 * 109.47175 * 210.00166 * 28 27 2 46 46 H 1.09005 * 109.46947 * 330.00569 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.7999 3.5107 0.0010 7 6 2.3644 4.9095 0.0009 8 6 3.5716 5.8115 0.0009 9 6 4.1257 6.2254 -1.1962 10 6 5.2327 7.0519 -1.1948 11 6 5.7880 7.4669 0.0036 12 6 5.2346 7.0535 1.1990 13 6 4.1219 6.2297 1.1971 14 6 6.0285 7.6476 2.3349 15 7 7.1058 8.4538 1.7521 16 6 8.0554 9.1638 2.4372 17 1 8.0552 9.1636 3.5172 18 6 9.0184 9.8838 1.7435 19 7 9.0190 9.8837 0.4273 20 14 10.3133 10.8529 2.6780 21 1 11.4951 9.9886 2.9262 22 1 10.7232 12.0332 1.8755 23 1 9.7512 11.3072 3.9752 24 6 6.9724 8.3532 0.2953 25 6 3.6591 0.6499 0.0006 26 7 3.6341 -0.6543 0.0015 27 7 2.3017 -1.0821 0.0059 28 6 1.8501 -2.4758 0.0141 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.7462 3.2973 0.0006 33 1 1.7662 5.1037 -0.8893 34 1 1.7654 5.1036 0.8907 35 1 3.6939 5.9022 -2.1319 36 1 5.6651 7.3754 -2.1302 37 1 3.6860 5.9101 2.1320 38 1 5.3836 8.2796 2.9455 39 1 6.4521 6.8507 2.9460 40 1 9.6917 10.3872 -0.0574 41 1 7.8756 7.9147 -0.1290 42 1 6.8064 9.3430 -0.1297 43 1 4.5449 1.2677 0.0004 44 1 1.7378 -2.8273 -1.0115 45 1 2.5849 -3.0927 0.5311 46 1 0.8916 -2.5441 0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054255094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 96.134805 kcal Electronic energy + Delta-G solvation = -27804.765914 eV Core-core repulsion = 23889.740950 eV Total energy + Delta-G solvation = -3915.024964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76131 -39.81931 -39.02391 -36.32425 -34.57743 -33.92281 -32.31448 -32.19727 -31.15745 -29.79142 -28.28730 -27.24202 -26.98524 -25.91225 -24.44623 -22.62758 -22.00565 -20.77387 -20.41766 -20.27097 -19.68719 -17.83787 -17.01540 -16.26417 -16.19702 -15.81269 -15.51996 -15.18598 -14.87259 -14.53959 -14.47369 -14.30280 -14.16322 -13.75798 -13.57375 -13.43899 -13.18044 -13.07283 -12.99508 -12.88755 -12.49120 -12.33828 -11.92575 -11.82499 -11.64718 -11.53867 -11.16346 -11.08209 -10.84399 -10.46849 -10.21577 -10.14408 -9.97677 -9.80156 -9.76231 -9.20031 -8.95250 -8.80874 -8.40039 -8.01185 -6.85832 -5.82241 -3.15480 1.22085 1.59317 1.76267 1.91292 1.98489 3.30668 3.34112 3.37122 3.41805 3.44066 4.06120 4.18288 4.21759 4.40552 4.56876 4.60460 4.68962 4.77330 4.88164 4.98061 5.01256 5.17477 5.19331 5.27462 5.34091 5.42610 5.51400 5.54520 5.59447 5.67555 5.78592 5.87952 6.04114 6.09938 6.13063 6.38266 6.48129 6.51515 6.55094 6.55978 6.78541 6.81613 7.06434 7.21190 7.32872 7.36187 7.52129 7.52951 7.68581 8.12750 8.21809 9.10735 9.70615 10.37694 11.31852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.001932 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.455815 B =14490.040611 C =15049.678771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.156 3.844 3 C -0.298 4.298 4 C 0.596 3.404 5 O -0.553 6.553 6 N -0.720 5.720 7 C 0.173 3.827 8 C -0.132 4.132 9 C -0.103 4.103 10 C -0.112 4.112 11 C -0.081 4.081 12 C -0.107 4.107 13 C -0.083 4.083 14 C 0.175 3.825 15 N -0.601 5.601 16 C -0.226 4.226 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.918 3.082 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.205 3.795 25 C 0.086 3.914 26 N -0.298 5.298 27 N -0.365 5.365 28 C 0.096 3.904 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.191 0.809 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 -21.823 -3.444 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.024 3.976 3 C -0.313 4.313 4 C 0.384 3.616 5 O -0.433 6.433 6 N -0.371 5.371 7 C 0.051 3.949 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.131 4.131 11 C -0.082 4.082 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.050 3.950 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.101 0.899 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.081 3.919 25 C -0.102 4.102 26 N -0.117 5.117 27 N -0.145 5.145 28 C -0.045 4.045 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.208 0.792 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.623 -22.691 -3.466 28.341 hybrid contribution 0.888 1.094 0.346 1.451 sum -15.735 -21.596 -3.120 26.902 Atomic orbital electron populations 1.20698 0.86018 1.04827 1.04170 1.21534 0.94928 0.86285 0.94891 1.20000 0.92861 0.93563 1.24853 1.17171 0.85373 0.83598 0.75496 1.90721 1.16537 1.84342 1.51679 1.45905 1.09870 1.05730 1.75582 1.20074 0.93784 0.78384 1.02701 1.19475 0.98514 1.01759 0.93460 1.20828 0.96181 0.98176 0.96981 1.20500 0.96453 0.98882 0.97258 1.21543 0.97549 0.96144 0.92979 1.20721 0.95587 0.97447 0.96994 1.20308 0.95186 0.97545 0.97192 1.19706 0.89485 0.93515 0.92318 1.43957 1.31367 1.56184 1.01215 1.18979 1.04025 1.21841 0.90476 0.89858 1.24840 0.99306 1.00435 0.95827 1.69925 1.36605 1.45487 1.04985 0.86022 0.81342 0.79264 0.78557 1.21455 1.21559 1.20548 1.19736 0.90875 0.95689 0.85597 1.24085 0.97335 0.91995 0.96779 1.77220 0.95873 1.13350 1.25280 1.48383 1.04159 1.06386 1.55587 1.21966 1.01345 0.77351 1.03874 0.89494 0.91197 0.87395 0.76425 0.90838 0.90832 0.86310 0.86157 0.86523 0.94595 0.94612 0.93470 0.91804 0.91813 0.79218 0.90224 0.88791 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 9.57 36.01 0.34 -0.34 16 2 C 0.16 1.49 7.01 -81.60 -0.57 0.92 16 3 C -0.30 -3.26 6.13 -105.06 -0.64 -3.91 16 4 C 0.60 7.28 7.81 -12.52 -0.10 7.18 16 5 O -0.55 -8.07 14.84 5.27 0.08 -7.99 16 6 N -0.72 -7.87 5.54 -62.56 -0.35 -8.22 16 7 C 0.17 2.02 5.80 -5.20 -0.03 1.99 16 8 C -0.13 -1.75 5.25 -104.65 -0.55 -2.30 16 9 C -0.10 -1.41 9.70 -39.61 -0.38 -1.80 16 10 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 11 C -0.08 -1.60 6.22 -104.57 -0.65 -2.25 16 12 C -0.11 -2.00 6.22 -104.57 -0.65 -2.65 16 13 C -0.08 -1.26 9.70 -39.54 -0.38 -1.64 16 14 C 0.18 3.73 7.25 -5.08 -0.04 3.69 16 15 N -0.60 -15.49 3.41 -175.68 -0.60 -16.09 16 16 C -0.23 -6.23 10.32 -15.06 -0.16 -6.38 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.60 10.44 55.49 0.58 -26.03 16 20 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.21 5.01 5.39 -5.08 -0.03 4.98 16 25 C 0.09 0.87 11.50 -16.98 -0.20 0.67 16 26 N -0.30 -3.27 12.50 30.86 0.39 -2.89 16 27 N -0.37 -3.25 3.98 -63.34 -0.25 -3.51 16 28 C 0.10 0.41 11.24 59.85 0.67 1.08 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.29 7.04 -51.93 -0.37 -0.07 16 31 H 0.11 0.96 6.50 -51.93 -0.34 0.62 16 32 H 0.40 3.82 7.42 -40.82 -0.30 3.52 16 33 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 42 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 43 H 0.19 1.41 7.50 -52.49 -0.39 1.02 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.18 7.01 -51.93 -0.36 -0.19 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -34.02 383.88 -9.55 -43.57 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.31 Total: 1.95 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.85 Total: -3.31 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.23 Total: -56.72 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.08 Total: -7.99 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.02 -9.55 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054255094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.707 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds