Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35035 * 126.38484 * 2 1 4 4 H 0.97007 * 124.88360 * 0.03980 * 3 2 1 5 5 N 1.28464 * 110.23335 * 180.28476 * 3 2 1 6 6 C 1.31810 * 110.07018 * 359.75118 * 5 3 2 7 7 C 1.47711 * 126.51532 * 180.02562 * 6 5 3 8 8 O 1.21579 * 119.99876 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00422 * 0.02562 * 7 6 5 10 10 C 1.46499 * 120.00190 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.38254 * 120.02323 * 90.00036 * 11 10 9 13 13 C 1.38146 * 119.96312 * 180.02562 * 12 11 10 14 14 C 1.38447 * 120.10159 * 359.97239 * 13 12 11 15 15 C 1.38070 * 119.93914 * 0.02732 * 14 13 12 16 16 C 1.38155 * 120.01572 * 269.72104 * 11 10 9 17 17 C 1.50773 * 108.86689 * 180.02562 * 15 14 13 18 18 N 1.46637 * 107.69824 * 359.97438 * 17 15 14 19 19 C 1.36934 * 126.56209 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00082 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00018 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46843 * 90.00108 * 23 21 19 25 25 H 1.48498 * 109.47134 * 209.99988 * 23 21 19 26 26 H 1.48504 * 109.46919 * 330.00382 * 23 21 19 27 27 C 1.46632 * 106.87787 * 359.97438 * 18 17 15 28 28 C 1.35360 * 126.38911 * 179.86478 * 2 1 3 29 29 C 1.50703 * 127.24708 * 359.97438 * 28 2 1 30 30 H 1.09005 * 109.46621 * 270.13911 * 1 2 3 31 31 H 1.08990 * 109.47419 * 30.13515 * 1 2 3 32 32 H 1.08996 * 109.47082 * 150.13857 * 1 2 3 33 33 H 0.97003 * 120.00057 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46701 * 299.99922 * 10 9 7 35 35 H 1.08997 * 109.46981 * 60.00323 * 10 9 7 36 36 H 1.07994 * 120.01379 * 359.97401 * 12 11 10 37 37 H 1.07996 * 119.95069 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.94973 * 0.02562 * 16 11 10 39 39 H 1.08994 * 109.81175 * 119.54592 * 17 15 14 40 40 H 1.09002 * 109.81446 * 240.45323 * 17 15 14 41 41 H 0.97001 * 120.00573 * 180.02562 * 22 21 19 42 42 H 1.08993 * 109.81890 * 240.45076 * 27 18 17 43 43 H 1.09002 * 109.81382 * 119.54147 * 27 18 17 44 44 H 1.09002 * 109.47152 * 269.70696 * 29 28 2 45 45 H 1.09001 * 109.46980 * 149.70797 * 29 28 2 46 46 H 1.09004 * 109.47113 * 29.70778 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0058 0.0006 5 7 3.5420 0.7298 -0.0060 6 6 3.6321 -0.5853 -0.0049 7 6 4.8765 -1.3810 -0.0098 8 8 4.8214 -2.5955 -0.0086 9 7 6.0730 -0.7608 -0.0157 10 6 7.3072 -1.5500 -0.0213 11 6 8.4959 -0.6236 -0.0266 12 6 9.0468 -0.1984 1.1679 13 6 10.1361 0.6513 1.1616 14 6 10.6774 1.0773 -0.0394 15 6 10.1272 0.6526 -1.2324 16 6 9.0392 -0.2034 -1.2253 17 6 10.9045 1.2615 -2.3718 18 7 11.9683 2.0888 -1.7939 19 6 12.9004 2.8177 -2.4833 20 1 12.8955 2.8169 -3.5633 21 6 13.8521 3.5566 -1.7940 22 7 13.8589 3.5563 -0.4779 23 14 15.1240 4.5503 -2.7344 24 1 14.6008 5.9182 -2.9799 25 1 16.3744 4.6343 -1.9378 26 1 15.4079 3.8885 -4.0331 27 6 11.8423 1.9874 -0.3366 28 6 2.3101 -1.0897 0.0026 29 6 1.8855 -2.5356 0.0065 30 1 -0.3633 0.0025 1.0277 31 1 -0.3634 0.8887 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 6.1171 0.2083 -0.0164 34 1 7.3407 -2.1783 0.8689 35 1 7.3323 -2.1790 -0.9111 36 1 8.6254 -0.5296 2.1055 37 1 10.5661 0.9837 2.0948 38 1 8.6111 -0.5390 -2.1584 39 1 11.3410 0.4727 -2.9844 40 1 10.2448 1.8804 -2.9800 41 1 14.5237 4.0729 0.0039 42 1 11.6590 2.9743 0.0881 43 1 12.7553 1.5667 0.0849 44 1 1.7885 -2.8830 1.0351 45 1 2.6344 -3.1356 -0.5105 46 1 0.9265 -2.6341 -0.5022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054259560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 86.553654 kcal Electronic energy + Delta-G solvation = -27782.875235 eV Core-core repulsion = 23867.434800 eV Total energy + Delta-G solvation = -3915.440434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.02661 -39.86948 -39.15911 -36.34216 -34.57738 -33.76525 -32.84661 -32.19588 -31.12261 -29.77086 -28.77524 -27.44707 -26.43683 -26.04629 -24.91978 -23.39189 -21.99381 -20.42700 -20.39841 -20.22731 -19.89855 -17.91687 -17.17382 -17.01159 -16.32212 -15.95399 -15.50874 -15.17237 -14.71082 -14.45147 -14.29697 -14.24669 -14.15744 -13.82606 -13.45909 -13.28355 -13.20390 -13.07734 -12.99055 -12.63946 -12.38722 -12.26959 -11.92429 -11.82008 -11.64665 -11.53481 -11.08013 -11.06952 -10.84524 -10.46328 -10.24081 -10.18378 -10.10858 -9.79813 -9.64587 -9.11857 -8.97892 -8.94969 -8.38768 -8.00466 -6.85369 -5.81845 -3.15067 1.33219 1.60397 1.74827 1.77767 2.51065 3.20158 3.27343 3.37102 3.41714 3.44057 4.11959 4.23120 4.29878 4.40752 4.57270 4.74640 4.91834 4.98345 4.99514 5.07350 5.27815 5.32323 5.34871 5.39521 5.42896 5.53194 5.58044 5.60129 5.66807 5.74441 5.88876 5.89539 6.05016 6.13725 6.23420 6.33425 6.52281 6.56075 6.56716 6.64872 6.79389 6.82413 7.07236 7.33499 7.33672 7.38672 7.53400 7.63463 7.68952 8.11248 8.13079 9.11080 9.70952 10.38252 11.32271 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001934 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.826709 B =14476.412456 C =15047.101408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 N -0.379 5.379 4 H 0.445 0.555 5 N -0.254 5.254 6 C -0.011 4.011 7 C 0.602 3.398 8 O -0.534 6.534 9 N -0.710 5.710 10 C 0.170 3.830 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.083 4.083 17 C 0.176 3.824 18 N -0.601 5.601 19 C -0.226 4.226 20 H 0.084 0.916 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.206 3.794 28 C -0.145 4.145 29 C -0.078 4.078 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.650 -7.979 3.616 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 N -0.094 5.094 4 H 0.290 0.710 5 N -0.090 5.090 6 C -0.172 4.172 7 C 0.387 3.613 8 O -0.409 6.409 9 N -0.362 5.362 10 C 0.048 3.952 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.108 4.108 16 C -0.101 4.101 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.353 4.353 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.081 3.919 28 C -0.155 4.155 29 C -0.136 4.136 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.776 -7.805 3.638 27.176 hybrid contribution 0.131 1.042 -0.360 1.110 sum -25.645 -6.763 3.278 26.723 Atomic orbital electron populations 1.20341 0.86531 1.03943 1.03339 1.21221 0.95272 0.86917 1.08592 1.43203 1.02929 1.09528 1.53711 0.71026 1.73573 1.01665 1.14909 1.18843 1.21848 0.94907 0.89670 1.10744 1.16876 0.81591 0.86401 0.76466 1.90770 1.86741 1.12770 1.50598 1.46037 1.04851 1.11225 1.74073 1.20147 0.80100 0.92063 1.02902 1.19453 0.98351 1.01895 0.93522 1.20824 0.96342 0.97929 0.96985 1.20491 0.96672 0.98693 0.97235 1.21547 0.97407 0.96266 0.92973 1.20715 0.95797 0.97241 0.97018 1.20308 0.95478 0.97219 0.97145 1.19702 0.89743 0.93257 0.92302 1.43955 1.33058 1.54475 1.01230 1.18980 1.05274 1.20617 0.90436 0.89858 1.24842 0.99361 1.00380 0.95833 1.69920 1.37198 1.44790 1.05103 0.86023 0.80647 0.79932 0.78585 1.21471 1.21552 1.20541 1.19736 0.91239 0.95340 0.85554 1.20113 0.90597 0.96700 1.08073 1.20192 1.01314 0.89698 1.02370 0.90291 0.91102 0.89499 0.75556 0.90586 0.90587 0.86301 0.86133 0.86516 0.94563 0.94630 0.93471 0.91817 0.91794 0.91447 0.89831 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.26 36.01 0.37 0.07 16 2 C 0.01 0.04 7.23 -82.21 -0.59 -0.55 16 3 N -0.38 -2.90 6.83 33.50 0.23 -2.68 16 4 H 0.45 1.79 8.96 -190.44 -1.71 0.08 16 5 N -0.25 -2.79 11.92 33.42 0.40 -2.39 16 6 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 7 C 0.60 8.13 7.83 -12.39 -0.10 8.03 16 8 O -0.53 -8.25 15.12 5.30 0.08 -8.17 16 9 N -0.71 -8.82 5.55 -62.47 -0.35 -9.16 16 10 C 0.17 2.11 5.80 -5.19 -0.03 2.08 16 11 C -0.13 -1.86 5.25 -104.65 -0.55 -2.41 16 12 C -0.10 -1.47 9.70 -39.61 -0.38 -1.85 16 13 C -0.11 -1.89 10.05 -39.54 -0.40 -2.29 16 14 C -0.08 -1.64 6.22 -104.57 -0.65 -2.29 16 15 C -0.11 -2.07 6.22 -104.57 -0.65 -2.72 16 16 C -0.08 -1.30 9.70 -39.53 -0.38 -1.69 16 17 C 0.18 3.80 7.25 -5.08 -0.04 3.77 16 18 N -0.60 -15.67 3.41 -175.68 -0.60 -16.27 16 19 C -0.23 -6.27 10.32 -15.06 -0.16 -6.43 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -26.78 10.44 55.49 0.58 -26.20 16 23 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.21 5.09 5.39 -5.08 -0.03 5.06 16 28 C -0.14 -1.48 6.25 -104.41 -0.65 -2.13 16 29 C -0.08 -0.68 9.74 36.01 0.35 -0.33 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.26 7.30 -51.93 -0.38 -0.12 16 33 H 0.41 4.93 8.19 -40.82 -0.33 4.59 16 34 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 43 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.89 6.72 -51.93 -0.35 0.54 16 46 H 0.06 0.38 7.31 -51.93 -0.38 0.00 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -33.50 384.61 -11.15 -44.66 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.69 Total: 2.30 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -4.57 Total: -4.71 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.26 Total: -56.70 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.50 -11.15 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054259560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.212 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds