Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35358 * 127.25145 * 2 1 4 4 N 1.35035 * 107.23240 * 179.97438 * 3 2 1 5 5 C 1.46494 * 124.88525 * 180.02562 * 4 3 2 6 6 N 1.28463 * 110.22573 * 359.76208 * 4 3 2 7 7 C 1.31804 * 110.07865 * 0.39571 * 6 4 3 8 8 C 1.47711 * 126.52066 * 179.88311 * 7 6 4 9 9 O 1.21573 * 120.00075 * 179.68683 * 8 7 6 10 10 N 1.34777 * 119.99927 * 359.41177 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27919 * 10 8 7 12 12 C 1.50694 * 109.47550 * 179.97438 * 11 10 8 13 13 C 1.38256 * 120.01955 * 89.99553 * 12 11 10 14 14 C 1.38138 * 119.96317 * 180.02562 * 13 12 11 15 15 C 1.38439 * 120.10406 * 359.97438 * 14 13 12 16 16 C 1.38064 * 119.93745 * 0.02562 * 15 14 13 17 17 C 1.38145 * 120.02213 * 269.72774 * 12 11 10 18 18 C 1.50776 * 108.86478 * 180.02562 * 16 15 14 19 19 N 1.46630 * 107.70281 * 0.02562 * 18 16 15 20 20 C 1.36936 * 126.56681 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99989 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00352 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99985 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00305 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47054 * 90.00095 * 24 22 20 26 26 H 1.48497 * 109.47371 * 209.99927 * 24 22 20 27 27 H 1.48504 * 109.47100 * 330.00111 * 24 22 20 28 28 C 1.46632 * 106.87487 * 359.97438 * 19 18 16 29 29 H 1.09003 * 109.47424 * 270.04355 * 1 2 3 30 30 H 1.09002 * 109.46944 * 30.04554 * 1 2 3 31 31 H 1.09005 * 109.47378 * 150.04225 * 1 2 3 32 32 H 1.08008 * 126.38544 * 359.93039 * 3 2 1 33 33 H 1.09005 * 109.47106 * 89.99557 * 5 4 3 34 34 H 1.08998 * 109.47480 * 209.99980 * 5 4 3 35 35 H 1.09000 * 109.47286 * 329.99625 * 5 4 3 36 36 H 0.97000 * 119.99736 * 0.27192 * 10 8 7 37 37 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 38 38 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 39 39 H 1.08007 * 120.01386 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.94557 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.94454 * 359.97438 * 17 12 11 42 42 H 1.09002 * 109.81200 * 119.55039 * 18 16 15 43 43 H 1.09003 * 109.81279 * 240.44906 * 18 16 15 44 44 H 0.97000 * 120.00526 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.81692 * 240.45876 * 28 19 18 46 46 H 1.08998 * 109.81461 * 119.54675 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0774 0.0000 4 7 3.5951 0.6152 0.0006 5 6 4.7937 1.4574 0.0013 6 7 3.5997 -0.6694 0.0059 7 6 2.3634 -1.1264 0.0006 8 6 1.9505 -2.5447 0.0017 9 8 0.7697 -2.8339 0.0020 10 7 2.8827 -3.5180 -0.0034 11 6 2.4732 -4.9245 -0.0085 12 6 3.6969 -5.8041 -0.0141 13 6 4.2605 -6.2126 1.1804 14 6 5.3825 -7.0184 1.1738 15 6 5.9434 -7.4181 -0.0271 16 6 5.3806 -7.0102 -1.2200 17 6 4.2528 -6.2071 -1.2128 18 6 6.1835 -7.5848 -2.3595 19 7 7.2764 -8.3733 -1.7818 20 6 8.2379 -9.0628 -2.4712 21 1 8.2359 -9.0582 -3.5513 22 6 9.2151 -9.7677 -1.7821 23 7 9.2179 -9.7730 -0.4659 24 14 10.5262 -10.7089 -2.7226 25 1 11.6915 -9.8218 -2.9690 26 1 10.9591 -11.8848 -1.9257 27 1 9.9705 -11.1682 -4.0209 28 6 7.1436 -8.2812 -0.3244 29 1 -0.3634 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3634 -0.8904 -0.5132 32 1 2.0220 2.1138 -0.0011 33 1 5.0904 1.6662 1.0292 34 1 5.6029 0.9383 -0.5122 35 1 4.5796 2.3946 -0.5125 36 1 3.8249 -3.2871 -0.0037 37 1 1.8794 -5.1333 0.8814 38 1 1.8771 -5.1262 -0.8985 39 1 3.8243 -5.9012 2.1180 40 1 5.8224 -7.3378 2.1071 41 1 3.8096 -5.8917 -2.1458 42 1 5.5493 -8.2260 -2.9718 43 1 6.5913 -6.7776 -2.9681 44 1 9.9005 -10.2659 0.0157 45 1 8.0391 -7.8278 0.1003 46 1 6.9966 -9.2757 0.0968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054265212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 101.023143 kcal Electronic energy + Delta-G solvation = -27858.733502 eV Core-core repulsion = 23943.920512 eV Total energy + Delta-G solvation = -3914.812990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.93559 -39.86171 -39.15074 -36.34019 -34.52653 -34.17980 -32.44336 -32.04297 -31.08788 -29.75602 -28.59635 -27.66037 -26.67207 -25.87785 -24.47253 -22.64584 -21.98211 -20.97156 -20.40882 -20.29059 -19.89281 -17.91329 -17.01165 -16.64478 -16.59851 -15.98302 -15.51501 -15.23098 -14.75537 -14.50634 -14.29895 -14.23315 -14.00924 -13.86598 -13.60902 -13.40396 -13.18246 -12.98709 -12.92442 -12.74886 -12.36814 -12.29725 -11.92025 -11.81624 -11.64264 -11.53183 -11.07975 -11.03699 -10.84499 -10.46024 -10.22550 -10.17360 -10.09693 -9.79828 -9.54564 -9.14936 -8.94881 -8.94559 -8.38403 -8.00162 -6.85368 -5.81881 -3.15146 1.37453 1.60914 1.78079 1.83344 2.15120 3.22708 3.31033 3.37005 3.41634 3.43993 4.02005 4.18641 4.40742 4.43837 4.59743 4.63596 4.76382 4.91715 4.97311 5.01180 5.07377 5.28195 5.28409 5.35330 5.42832 5.53755 5.58591 5.60387 5.67959 5.77388 5.89389 5.93838 6.05361 6.14142 6.24235 6.34215 6.47470 6.52699 6.56267 6.56808 6.79772 6.83028 7.07472 7.33577 7.35716 7.40156 7.53484 7.68797 7.69025 8.13086 8.14441 9.11040 9.70904 10.38224 11.32246 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.002047 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.414972 B =13675.931705 C =14442.633379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.146 4.146 3 C -0.026 4.026 4 N -0.283 5.283 5 C 0.086 3.914 6 N -0.258 5.258 7 C -0.018 4.018 8 C 0.604 3.396 9 O -0.535 6.535 10 N -0.711 5.711 11 C 0.170 3.830 12 C -0.131 4.131 13 C -0.102 4.102 14 C -0.112 4.112 15 C -0.081 4.081 16 C -0.107 4.107 17 C -0.083 4.083 18 C 0.176 3.824 19 N -0.601 5.601 20 C -0.225 4.225 21 H 0.084 0.916 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.918 3.082 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.206 3.794 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 23.260 3.530 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.168 4.168 4 N -0.071 5.071 5 C -0.054 4.054 6 N -0.094 5.094 7 C -0.178 4.178 8 C 0.388 3.612 9 O -0.410 6.410 10 N -0.362 5.362 11 C 0.048 3.952 12 C -0.132 4.132 13 C -0.121 4.121 14 C -0.131 4.131 15 C -0.082 4.082 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.353 4.353 21 H 0.101 0.899 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.748 3.252 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.081 3.919 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.860 22.607 3.557 26.251 hybrid contribution 0.593 0.038 -0.346 0.688 sum -12.267 22.645 3.211 25.953 Atomic orbital electron populations 1.20174 0.88036 1.03051 1.02353 1.20391 0.97503 0.90415 1.07258 1.22621 0.83680 1.00548 1.09993 1.45278 1.07144 1.03741 1.50957 1.22199 0.84845 0.93778 1.04565 1.73532 1.23239 0.93822 1.18823 1.21857 0.89495 0.95025 1.11379 1.16875 0.85387 0.82559 0.76373 1.90764 1.16827 1.82715 1.50698 1.46032 1.10291 1.05754 1.74157 1.20140 0.94002 0.78188 1.02879 1.19454 0.98293 1.01913 0.93518 1.20826 0.96058 0.98215 0.96990 1.20488 0.96299 0.99069 0.97231 1.21542 0.97630 0.96074 0.92976 1.20710 0.95464 0.97576 0.97012 1.20305 0.95067 0.97637 0.97148 1.19703 0.89234 0.93764 0.92306 1.43959 1.29822 1.57721 1.01244 1.18980 1.02923 1.22955 0.90434 0.89859 1.24842 0.99239 1.00510 0.95837 1.69923 1.36021 1.45972 1.05104 0.86021 0.81417 0.79154 0.78584 1.21465 1.21557 1.20539 1.19736 0.90573 0.96008 0.85543 0.91488 0.92076 0.89849 0.80201 0.89625 0.88319 0.88584 0.75587 0.90611 0.90619 0.86306 0.86138 0.86521 0.94568 0.94626 0.93472 0.91822 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.93 36.00 0.36 -0.35 16 2 C -0.15 -1.53 6.25 -104.41 -0.65 -2.19 16 3 C -0.03 -0.20 11.40 -17.17 -0.20 -0.40 16 4 N -0.28 -2.41 3.70 -68.13 -0.25 -2.66 16 5 C 0.09 0.33 11.31 59.84 0.68 1.01 16 6 N -0.26 -3.01 11.67 33.42 0.39 -2.62 16 7 C -0.02 -0.22 7.13 -82.76 -0.59 -0.81 16 8 C 0.60 8.34 7.83 -12.39 -0.10 8.24 16 9 O -0.53 -8.44 15.12 5.30 0.08 -8.36 16 10 N -0.71 -9.02 5.55 -62.48 -0.35 -9.36 16 11 C 0.17 2.15 5.80 -5.20 -0.03 2.12 16 12 C -0.13 -1.87 5.25 -104.65 -0.55 -2.42 16 13 C -0.10 -1.48 9.70 -39.61 -0.38 -1.86 16 14 C -0.11 -1.90 10.04 -39.54 -0.40 -2.30 16 15 C -0.08 -1.65 6.22 -104.57 -0.65 -2.30 16 16 C -0.11 -2.07 6.22 -104.57 -0.65 -2.72 16 17 C -0.08 -1.31 9.70 -39.54 -0.38 -1.70 16 18 C 0.18 3.81 7.25 -5.09 -0.04 3.77 16 19 N -0.60 -15.70 3.41 -175.67 -0.60 -16.30 16 20 C -0.23 -6.27 10.32 -15.06 -0.16 -6.42 16 21 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.78 10.44 55.49 0.58 -26.20 16 24 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.21 5.09 5.39 -5.08 -0.03 5.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 32 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.10 8.13 -51.93 -0.42 -0.32 16 36 H 0.41 5.05 8.19 -40.82 -0.33 4.71 16 37 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 41 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 46 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -33.98 387.39 -9.69 -43.67 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.50 Total: 2.74 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.86 Total: -3.57 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.23 Total: -57.14 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.98 -9.69 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054265212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.690 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds