Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33313 * 126.10867 * 2 1 4 4 C 1.30858 * 109.68589 * 179.97438 * 3 2 1 5 5 N 1.34495 * 109.16626 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.47474 * 179.73562 * 5 4 3 7 7 C 1.36670 * 126.10712 * 179.97438 * 2 1 3 8 8 C 1.46762 * 126.84205 * 0.02562 * 7 2 1 9 9 O 1.21678 * 120.00322 * 86.71815 * 8 7 2 10 10 N 1.34778 * 119.99714 * 266.71176 * 8 7 2 11 11 C 1.46506 * 119.99795 * 185.31332 * 10 8 7 12 12 C 1.50704 * 109.46622 * 180.02562 * 11 10 8 13 13 C 1.38251 * 120.01810 * 90.00513 * 12 11 10 14 14 C 1.38145 * 119.96232 * 179.97438 * 13 12 11 15 15 C 1.38448 * 120.10194 * 359.97438 * 14 13 12 16 16 C 1.38063 * 119.93536 * 0.02562 * 15 14 13 17 17 C 1.38144 * 120.02199 * 269.72234 * 12 11 10 18 18 C 1.50773 * 108.86124 * 180.02562 * 16 15 14 19 19 N 1.46638 * 107.70281 * 0.02562 * 18 16 15 20 20 C 1.36934 * 126.56143 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00490 * 354.57927 * 20 19 18 22 22 C 1.38814 * 119.99615 * 174.58543 * 20 19 18 23 23 N 1.31618 * 120.00220 * 6.24509 * 22 20 19 24 24 Si 1.86809 * 119.99827 * 186.24699 * 22 20 19 25 25 H 1.48501 * 109.46923 * 94.98733 * 24 22 20 26 26 H 1.48500 * 109.46953 * 214.98879 * 24 22 20 27 27 H 1.48497 * 109.46854 * 334.98934 * 24 22 20 28 28 C 1.46631 * 106.87215 * 359.97438 * 19 18 16 29 29 H 1.08999 * 109.47188 * 89.97615 * 1 2 3 30 30 H 1.09001 * 109.46975 * 209.97735 * 1 2 3 31 31 H 1.08996 * 109.47058 * 329.97151 * 1 2 3 32 32 H 1.08008 * 125.41553 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46842 * 85.18031 * 6 5 4 34 34 H 1.09000 * 109.47207 * 205.18213 * 6 5 4 35 35 H 1.09005 * 109.46899 * 325.18508 * 6 5 4 36 36 H 0.97000 * 120.00198 * 5.31868 * 10 8 7 37 37 H 1.08998 * 109.47357 * 299.99951 * 11 10 8 38 38 H 1.08998 * 109.46742 * 60.00675 * 11 10 8 39 39 H 1.08008 * 120.02180 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.95086 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.94276 * 0.02562 * 17 12 11 42 42 H 1.09000 * 109.81445 * 119.55162 * 18 16 15 43 43 H 1.09007 * 109.81596 * 240.45406 * 18 16 15 44 44 H 0.97003 * 119.99727 * 179.97438 * 23 22 20 45 45 H 1.09006 * 109.81156 * 240.45614 * 28 19 18 46 46 H 1.08994 * 109.81212 * 119.54936 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5479 0.7071 0.0006 5 7 3.6122 -0.6363 0.0004 6 6 4.8305 -1.4498 -0.0046 7 6 2.3124 -1.1042 0.0005 8 6 1.8821 -2.5073 0.0006 9 8 1.6464 -3.0715 -1.0514 10 7 1.7481 -3.1709 1.1660 11 6 1.4322 -4.6015 1.1621 12 6 1.3370 -5.0987 2.5816 13 6 0.1245 -5.0688 3.2451 14 6 0.0385 -5.5253 4.5461 15 6 1.1647 -6.0132 5.1867 16 6 2.3756 -6.0430 4.5241 17 6 2.4601 -5.5898 3.2187 18 6 3.4217 -6.6166 5.4460 19 7 2.7673 -6.9366 6.7187 20 6 3.3611 -7.4767 7.8281 21 1 4.3938 -7.7904 7.7892 22 6 2.6355 -7.6212 9.0027 23 7 1.3467 -7.3549 9.0171 24 14 3.4886 -8.1937 10.5629 25 1 3.8866 -7.0131 11.3711 26 1 2.5602 -9.0432 11.3514 27 1 4.6969 -8.9798 10.2065 28 6 1.3557 -6.5662 6.5764 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 4.3971 1.3744 0.0011 33 1 5.1848 -1.5797 1.0180 34 1 4.6145 -2.4250 -0.4409 35 1 5.5988 -0.9499 -0.5946 36 1 1.8607 -2.7014 2.0073 37 1 0.4799 -4.7620 0.6568 38 1 2.2179 -5.1456 0.6381 39 1 -0.7551 -4.6888 2.7466 40 1 -0.9088 -5.5015 5.0644 41 1 3.4063 -5.6169 2.6987 42 1 3.8423 -7.5224 5.0094 43 1 4.2115 -5.8835 5.6104 44 1 0.8397 -7.4563 9.8379 45 1 1.0965 -5.8075 7.3149 46 1 0.7272 -7.4461 6.7132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054269020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = 83.873734 kcal Electronic energy + Delta-G solvation = -28213.198924 eV Core-core repulsion = 24297.642280 eV Total energy + Delta-G solvation = -3915.556644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.51455 -39.99285 -39.28055 -36.44815 -34.81820 -34.62936 -32.39591 -31.76069 -31.12012 -29.85030 -28.80542 -27.50889 -26.46064 -26.00646 -24.68471 -22.85305 -22.08329 -21.02347 -20.50363 -20.40027 -19.91225 -18.05673 -17.08504 -16.74651 -16.36217 -15.82725 -15.70027 -15.51972 -14.93973 -14.75255 -14.41659 -14.34711 -14.11426 -13.99147 -13.87745 -13.39351 -13.24927 -13.10042 -13.02957 -12.63813 -12.51951 -12.42691 -12.04346 -11.93928 -11.75360 -11.62384 -11.14463 -10.90892 -10.78346 -10.55634 -10.30367 -10.20157 -10.16356 -9.94423 -9.87352 -9.37724 -8.99978 -8.71373 -8.50227 -8.09913 -6.92052 -5.88805 -3.21559 1.32649 1.53727 1.66481 1.86113 2.54754 2.69278 3.10684 3.33099 3.38070 3.40440 4.04359 4.17749 4.26453 4.34914 4.39278 4.60822 4.66076 4.76462 4.88219 4.91777 4.97523 5.16415 5.22412 5.35170 5.40228 5.46106 5.49929 5.51926 5.56354 5.68043 5.77788 5.81394 5.94078 6.02203 6.06746 6.27067 6.41376 6.45932 6.47527 6.67836 6.70166 6.71814 6.97370 7.15967 7.25158 7.27495 7.46362 7.62688 7.64714 7.81888 8.06681 9.04575 9.64669 10.31725 11.25543 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002159 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.287469 B =12968.390588 C =13402.138953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.060 3.940 3 N -0.492 5.492 4 C 0.202 3.798 5 N -0.438 5.438 6 C 0.067 3.933 7 C -0.081 4.081 8 C 0.597 3.403 9 O -0.526 6.526 10 N -0.710 5.710 11 C 0.169 3.831 12 C -0.134 4.134 13 C -0.101 4.101 14 C -0.112 4.112 15 C -0.078 4.078 16 C -0.107 4.107 17 C -0.084 4.084 18 C 0.176 3.824 19 N -0.600 5.600 20 C -0.229 4.229 21 H 0.084 0.916 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.917 3.083 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.204 3.796 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.212 0.788 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.406 0.594 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.067 0.933 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 12.537 -17.890 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 N -0.211 5.211 4 C -0.080 4.080 5 N -0.121 5.121 6 C -0.075 4.075 7 C -0.198 4.198 8 C 0.380 3.620 9 O -0.400 6.400 10 N -0.362 5.362 11 C 0.047 3.953 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.108 4.108 17 C -0.103 4.103 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.356 4.356 21 H 0.102 0.898 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.747 3.253 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.080 3.920 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.228 0.772 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.194 12.705 -18.419 22.483 hybrid contribution 0.928 -0.873 1.267 1.797 sum 3.122 11.831 -17.152 21.069 Atomic orbital electron populations 1.20145 0.86992 1.03097 1.02912 1.20882 0.96469 0.86791 1.03204 1.70023 1.00386 1.30083 1.20571 1.25019 0.97246 0.81586 1.04168 1.45287 1.05840 1.07790 1.53197 1.22197 0.84571 0.96402 1.04341 1.20671 0.84942 0.94976 1.19190 1.16891 0.77739 0.83347 0.84031 1.90856 1.49796 1.67928 1.31457 1.46236 1.71014 1.10553 1.08403 1.20187 1.01999 0.79379 0.93719 1.19416 0.94209 1.04689 0.95172 1.20837 0.96716 0.99923 0.94506 1.20519 0.98022 1.00053 0.94423 1.21559 0.93068 0.94645 0.98689 1.20724 0.97022 0.99004 0.94005 1.20274 0.97579 0.98980 0.93417 1.19704 0.92685 0.96567 0.86041 1.43952 1.04510 1.74207 1.10016 1.18978 0.95688 1.34208 0.86738 0.89832 1.24861 0.95942 1.01365 0.98029 1.69930 1.05582 1.54321 1.26904 0.86024 0.78361 0.78016 0.82921 1.21423 1.21588 1.20469 1.19766 0.86943 0.98521 0.86818 0.90686 0.91221 0.90392 0.77161 0.89600 0.89433 0.88786 0.75860 0.90333 0.90681 0.86188 0.86014 0.86645 0.94642 0.94611 0.93405 0.91483 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.24 36.01 0.37 -0.33 16 2 C 0.06 0.69 7.15 -82.51 -0.59 0.10 16 3 N -0.49 -5.72 11.20 -10.64 -0.12 -5.84 16 4 C 0.20 1.73 12.52 -90.57 -1.13 0.60 16 5 N -0.44 -3.84 3.17 -121.97 -0.39 -4.23 16 6 C 0.07 0.35 11.07 59.84 0.66 1.01 16 7 C -0.08 -0.91 6.66 -82.14 -0.55 -1.46 16 8 C 0.60 7.07 6.73 -12.82 -0.09 6.98 16 9 O -0.53 -7.93 17.12 5.21 0.09 -7.85 16 10 N -0.71 -7.25 5.54 -62.77 -0.35 -7.60 16 11 C 0.17 1.81 5.81 -5.19 -0.03 1.78 16 12 C -0.13 -1.68 5.25 -104.65 -0.55 -2.23 16 13 C -0.10 -1.32 9.70 -39.61 -0.38 -1.71 16 14 C -0.11 -1.76 10.05 -39.54 -0.40 -2.16 16 15 C -0.08 -1.51 6.22 -104.57 -0.65 -2.16 16 16 C -0.11 -1.93 6.22 -104.58 -0.65 -2.58 16 17 C -0.08 -1.19 9.70 -39.54 -0.38 -1.57 16 18 C 0.18 3.62 7.25 -5.08 -0.04 3.58 16 19 N -0.60 -15.15 3.41 -175.67 -0.60 -15.75 16 20 C -0.23 -6.20 10.31 -15.06 -0.16 -6.36 16 21 H 0.08 2.17 7.84 -52.49 -0.41 1.75 16 22 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 23 N -0.92 -26.16 10.48 55.49 0.58 -25.57 16 24 Si 0.92 21.38 29.56 -169.99 -5.02 16.36 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.20 4.87 5.40 -5.08 -0.03 4.84 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.21 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.54 7.79 -51.93 -0.40 0.14 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.41 3.86 8.45 -40.82 -0.34 3.51 16 37 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.07 1.76 7.37 -51.93 -0.38 1.37 16 46 H 0.06 1.62 7.62 -51.93 -0.40 1.23 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -33.78 390.13 -11.17 -44.95 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.55 Total: 1.53 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -4.69 Total: -1.89 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.87 Total: -58.99 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.78 -11.17 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054269020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.821 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds