Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30857 * 125.41538 * 2 1 4 4 C 1.33321 * 109.68256 * 179.74292 * 3 2 1 5 5 C 1.50703 * 126.10691 * 180.27006 * 4 3 2 6 6 C 1.36658 * 107.78796 * 0.38018 * 4 3 2 7 7 C 1.46766 * 126.84559 * 179.89215 * 6 4 3 8 8 O 1.21675 * 119.99703 * 359.71230 * 7 6 4 9 9 N 1.34780 * 119.99605 * 179.71160 * 7 6 4 10 10 C 1.46501 * 119.99677 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47405 * 179.97438 * 10 9 7 12 12 C 1.38258 * 120.02332 * 270.22002 * 11 10 9 13 13 C 1.38143 * 119.96364 * 180.23476 * 12 11 10 14 14 C 1.38449 * 120.10356 * 359.52277 * 13 12 11 15 15 C 1.38065 * 119.93194 * 0.25758 * 14 13 12 16 16 C 1.38148 * 120.01921 * 89.99621 * 11 10 9 17 17 C 1.50781 * 108.86152 * 179.97438 * 15 14 13 18 18 N 1.46634 * 107.70246 * 0.02562 * 17 15 14 19 19 C 1.36929 * 126.56839 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00426 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99648 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00072 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46834 * 59.99976 * 23 21 19 25 25 H 1.48492 * 109.46918 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46892 * 300.00105 * 23 21 19 27 27 C 1.46643 * 106.87045 * 359.97438 * 18 17 15 28 28 N 1.34498 * 125.41830 * 179.97438 * 2 1 3 29 29 H 0.96993 * 126.47391 * 359.97438 * 28 2 1 30 30 H 1.09001 * 109.47291 * 270.02155 * 1 2 3 31 31 H 1.08990 * 109.47417 * 30.02243 * 1 2 3 32 32 H 1.08999 * 109.47058 * 150.02348 * 1 2 3 33 33 H 1.08994 * 109.47077 * 270.13133 * 5 4 3 34 34 H 1.09007 * 109.46892 * 30.13247 * 5 4 3 35 35 H 1.08995 * 109.46927 * 150.12516 * 5 4 3 36 36 H 0.96997 * 120.00624 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.47248 * 59.99819 * 10 9 7 38 38 H 1.09003 * 109.47210 * 300.00035 * 10 9 7 39 39 H 1.07998 * 120.01283 * 0.03461 * 12 11 10 40 40 H 1.08002 * 119.95132 * 179.80781 * 13 12 11 41 41 H 1.08002 * 119.94394 * 0.03126 * 16 11 10 42 42 H 1.09000 * 109.81260 * 119.54868 * 17 15 14 43 43 H 1.08998 * 109.81519 * 240.45467 * 17 15 14 44 44 H 0.97001 * 119.99333 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.80797 * 240.45438 * 27 18 17 46 46 H 1.08999 * 109.81012 * 119.54608 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0056 5 6 4.7335 1.6361 0.0133 6 6 3.5976 -0.6607 0.0007 7 6 4.8029 -1.4981 0.0019 8 8 5.9038 -0.9798 0.0025 9 7 4.6903 -2.8412 0.0024 10 6 5.8934 -3.6771 0.0042 11 6 5.4954 -5.1305 0.0050 12 6 5.3072 -5.7955 1.2024 13 6 4.9470 -7.1292 1.2018 14 6 4.7645 -7.7986 0.0037 15 6 4.9481 -7.1333 -1.1921 16 6 5.3138 -5.7981 -1.1908 17 6 4.6873 -8.0906 -2.3275 18 7 4.3308 -9.3878 -1.7441 19 6 4.0186 -10.5319 -2.4284 20 1 4.0208 -10.5328 -3.5085 21 6 3.7002 -11.6911 -1.7342 22 7 3.6990 -11.6904 -0.4180 23 14 3.2736 -13.2518 -2.6679 24 1 4.4231 -13.6484 -3.5204 25 1 2.9738 -14.3397 -1.7028 26 1 2.0843 -13.0075 -3.5229 27 6 4.3738 -9.2255 -0.2873 28 7 2.2865 -1.0961 0.0005 29 1 1.9850 -2.0180 0.0013 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 5.0228 1.8644 -1.0125 34 1 4.4674 2.5585 0.5297 35 1 5.5672 1.1589 0.5283 36 1 3.8127 -3.2544 0.0023 37 1 6.4840 -3.4620 0.8947 38 1 6.4861 -3.4628 -0.8853 39 1 5.4448 -5.2734 2.1378 40 1 4.8030 -7.6493 2.1373 41 1 5.4579 -5.2776 -2.1261 42 1 3.8639 -7.7223 -2.9394 43 1 5.5847 -8.1936 -2.9374 44 1 3.4761 -12.5003 0.0671 45 1 5.1120 -9.9051 0.1385 46 1 3.3913 -9.4330 0.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054281864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 69.907473 kcal Electronic energy + Delta-G solvation = -27895.471629 eV Core-core repulsion = 23979.309362 eV Total energy + Delta-G solvation = -3916.162267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60621 -40.00013 -39.27353 -36.48487 -34.82158 -33.62048 -32.66182 -32.22654 -31.22882 -29.85041 -29.46363 -27.91537 -26.67658 -25.93235 -24.49560 -22.23564 -22.03843 -21.30449 -20.52766 -20.47972 -19.92356 -18.71567 -17.10219 -16.45149 -16.22211 -16.11017 -15.61543 -15.26869 -14.78727 -14.56852 -14.44891 -14.28453 -14.27715 -13.97559 -13.50828 -13.32730 -13.26851 -13.11578 -12.85180 -12.73375 -12.50844 -12.32329 -12.03832 -11.93411 -11.77204 -11.64577 -11.14974 -10.88589 -10.73828 -10.58319 -10.33737 -10.31410 -10.23967 -10.14470 -9.86867 -9.41936 -9.03354 -8.65650 -8.53021 -8.12388 -6.94121 -5.89029 -3.22625 0.96255 1.45120 1.63501 2.46126 2.48114 2.98721 3.05103 3.32759 3.36788 3.38238 3.89389 4.03041 4.33925 4.42560 4.53462 4.70093 4.78219 4.87163 5.00722 5.05143 5.15033 5.21240 5.35920 5.36488 5.40186 5.42832 5.48188 5.56249 5.59278 5.73983 5.75960 5.82622 5.92241 6.00500 6.08967 6.31531 6.39270 6.44148 6.46669 6.65753 6.67659 6.82116 6.95234 7.14930 7.23581 7.24743 7.43560 7.60404 7.60567 7.87023 8.05360 9.03593 9.63431 10.30013 11.25037 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.002048 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.666934 B =13666.694369 C =14442.182816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.244 3.756 3 N -0.496 5.496 4 C 0.100 3.900 5 C -0.077 4.077 6 C -0.096 4.096 7 C 0.595 3.405 8 O -0.525 6.525 9 N -0.723 5.723 10 C 0.172 3.828 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.112 4.112 14 C -0.079 4.079 15 C -0.106 4.106 16 C -0.084 4.084 17 C 0.175 3.825 18 N -0.600 5.600 19 C -0.228 4.228 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.919 3.081 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.205 3.795 28 N -0.552 5.552 29 H 0.422 0.578 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.396 0.604 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 21.562 3.570 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 N -0.218 5.218 4 C -0.034 4.034 5 C -0.135 4.135 6 C -0.211 4.211 7 C 0.382 3.618 8 O -0.401 6.401 9 N -0.374 5.374 10 C 0.050 3.950 11 C -0.135 4.135 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.103 4.103 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.356 4.356 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.749 3.251 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.081 3.919 28 N -0.158 5.158 29 H 0.261 0.739 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.615 22.475 3.600 22.911 hybrid contribution -0.608 -2.512 -0.400 2.615 sum -3.224 19.963 3.200 20.473 Atomic orbital electron populations 1.20333 0.84093 1.04726 1.04202 1.23441 0.95882 0.81437 1.01251 1.70116 1.01657 1.28250 1.21741 1.21098 0.93180 0.90282 0.98864 1.20301 0.92978 0.97083 1.03125 1.20885 0.83741 0.95452 1.21039 1.16817 0.87011 0.81369 0.76643 1.90821 1.25814 1.73012 1.50438 1.46072 1.10316 1.05447 1.75587 1.20145 0.86231 0.85571 1.03101 1.19455 1.05962 0.94575 0.93539 1.20833 1.00057 0.94365 0.96934 1.20512 1.01265 0.93946 0.97337 1.21574 0.94554 0.98976 0.92943 1.20736 0.99103 0.93781 0.97065 1.20316 0.99700 0.93095 0.97158 1.19710 0.97709 0.85351 0.92276 1.43949 1.81599 1.05992 1.01166 1.18931 1.40296 0.85856 0.90467 0.89880 1.24846 1.01460 0.98169 0.95832 1.69907 1.54270 1.27850 1.04996 0.86092 0.78353 0.82269 0.78419 1.20945 1.21450 1.20984 1.19753 1.00659 0.85867 0.85661 1.43208 1.06029 1.10261 1.56310 0.73914 0.89460 0.88585 0.90203 0.90678 0.91056 0.89214 0.77039 0.90464 0.90457 0.86298 0.86053 0.86509 0.94637 0.94520 0.93361 0.91697 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.24 2.11 8.12 -155.61 -1.26 0.85 16 3 N -0.50 -5.74 11.20 -6.84 -0.08 -5.81 16 4 C 0.10 1.19 7.15 -82.52 -0.59 0.60 16 5 C -0.08 -0.79 9.88 36.01 0.36 -0.43 16 6 C -0.10 -1.05 7.08 -82.14 -0.58 -1.63 16 7 C 0.59 7.00 7.79 -12.81 -0.10 6.90 16 8 O -0.52 -7.54 14.82 5.21 0.08 -7.46 16 9 N -0.72 -7.22 5.54 -62.77 -0.35 -7.57 16 10 C 0.17 1.87 5.80 -5.20 -0.03 1.84 16 11 C -0.13 -1.69 5.25 -104.65 -0.55 -2.24 16 12 C -0.10 -1.33 9.70 -39.61 -0.38 -1.72 16 13 C -0.11 -1.74 10.05 -39.54 -0.40 -2.14 16 14 C -0.08 -1.51 6.22 -104.57 -0.65 -2.16 16 15 C -0.11 -1.92 6.22 -104.57 -0.65 -2.57 16 16 C -0.08 -1.20 9.70 -39.54 -0.38 -1.59 16 17 C 0.18 3.62 7.25 -5.08 -0.04 3.58 16 18 N -0.60 -15.14 3.41 -175.67 -0.60 -15.73 16 19 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.13 10.44 55.49 0.58 -25.55 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.20 4.87 5.39 -5.08 -0.03 4.84 16 28 N -0.55 -4.43 6.07 -7.02 -0.04 -4.47 16 29 H 0.42 2.14 8.32 -40.82 -0.34 1.80 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.98 6.49 -51.93 -0.34 0.64 16 36 H 0.40 3.27 7.71 -40.82 -0.31 2.96 16 37 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.07 1.70 7.49 -51.93 -0.39 1.31 16 46 H 0.06 1.67 7.49 -51.93 -0.39 1.28 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -33.02 385.24 -11.17 -44.19 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.38 Total: 2.72 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -5.16 Total: -2.44 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.49 Total: -59.14 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.08 Total: -7.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.02 -11.17 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054281864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.097 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds