Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30440 * 125.98918 * 2 1 4 4 N 1.39935 * 108.89716 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.75270 * 180.02562 * 4 3 2 6 6 C 1.34255 * 108.49266 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.29135 * 179.97438 * 6 4 3 8 8 C 1.38037 * 107.41613 * 0.26325 * 6 4 3 9 9 C 1.47433 * 126.41620 * 179.72049 * 8 6 4 10 10 O 1.21601 * 120.00272 * 89.99622 * 9 8 6 11 11 N 1.34780 * 119.99594 * 270.00145 * 9 8 6 12 12 C 1.46503 * 119.99591 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47055 * 179.97438 * 12 11 9 14 14 C 1.38255 * 120.01214 * 90.00343 * 13 12 11 15 15 C 1.38145 * 119.96045 * 180.02562 * 14 13 12 16 16 C 1.38449 * 120.10194 * 359.97438 * 15 14 13 17 17 C 1.38067 * 119.93665 * 0.02562 * 16 15 14 18 18 C 1.38142 * 120.02264 * 269.72954 * 13 12 11 19 19 C 1.50776 * 108.86398 * 180.02562 * 17 16 15 20 20 N 1.46640 * 107.70279 * 359.97438 * 19 17 16 21 21 C 1.36936 * 126.56166 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00545 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99201 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00391 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99264 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47282 * 60.00279 * 25 23 21 27 27 H 1.48502 * 109.47048 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47384 * 299.99806 * 25 23 21 29 29 C 1.46639 * 106.87104 * 0.02562 * 20 19 17 30 30 H 1.09005 * 109.47174 * 90.02175 * 1 2 3 31 31 H 1.08997 * 109.47112 * 210.01799 * 1 2 3 32 32 H 1.08998 * 109.47186 * 330.02242 * 1 2 3 33 33 H 1.09002 * 109.47152 * 90.02639 * 7 6 4 34 34 H 1.09001 * 109.46980 * 330.02740 * 7 6 4 35 35 H 1.09004 * 109.47113 * 210.02721 * 7 6 4 36 36 H 0.96995 * 120.00241 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47396 * 300.00027 * 12 11 9 38 38 H 1.09007 * 109.47069 * 60.00507 * 12 11 9 39 39 H 1.07997 * 120.02269 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.95302 * 180.02562 * 15 14 13 41 41 H 1.07997 * 119.95213 * 359.97438 * 18 13 12 42 42 H 1.08995 * 109.81772 * 119.54920 * 19 17 16 43 43 H 1.09006 * 109.81042 * 240.45027 * 19 17 16 44 44 H 0.96996 * 119.99317 * 179.97438 * 24 23 21 45 45 H 1.08995 * 109.81157 * 240.45195 * 29 20 19 46 46 H 1.08995 * 109.81045 * 119.54459 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6111 0.6441 0.0006 5 1 4.3842 1.2300 0.0011 6 6 3.6439 -0.6980 0.0004 7 6 4.8800 -1.5600 0.0003 8 6 2.3373 -1.1432 -0.0064 9 6 1.8915 -2.5485 -0.0148 10 8 1.7041 -3.1333 1.0347 11 7 1.6919 -3.1851 -1.1859 12 6 1.2496 -4.5817 -1.1943 13 6 1.1020 -5.0534 -2.6180 14 6 2.1755 -5.6314 -3.2698 15 6 2.0392 -6.0628 -4.5751 16 6 0.8289 -5.9179 -5.2315 17 6 -0.2432 -5.3406 -4.5806 18 6 -0.1075 -4.9136 -3.2706 19 6 -1.4232 -5.3085 -5.5186 20 7 -0.9993 -5.9054 -6.7891 21 6 -1.7684 -6.0695 -7.9101 22 1 -2.7978 -5.7430 -7.9113 23 6 -1.2248 -6.6556 -9.0450 24 7 0.0297 -7.0541 -9.0434 25 14 -2.2742 -6.8801 -10.5740 26 1 -2.7495 -5.5553 -11.0471 27 1 -1.4654 -7.5256 -11.6391 28 1 -3.4420 -7.7386 -10.2512 29 6 0.4059 -6.2930 -6.6293 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5135 33 1 5.1777 -1.7684 1.0280 34 1 5.6873 -1.0376 -0.5130 35 1 4.6691 -2.4976 -0.5141 36 1 1.8412 -2.7186 -2.0231 37 1 1.9865 -5.1994 -0.6811 38 1 0.2896 -4.6618 -0.6841 39 1 3.1201 -5.7455 -2.7589 40 1 2.8778 -6.5147 -5.0840 41 1 -0.9474 -4.4664 -2.7597 42 1 -2.2468 -5.8841 -5.0962 43 1 -1.7374 -4.2775 -5.6818 44 1 0.4093 -7.4639 -9.8363 45 1 1.0206 -5.7619 -7.3561 46 1 0.5109 -7.3686 -6.7712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054285833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 85.250239 kcal Electronic energy + Delta-G solvation = -28119.279344 eV Core-core repulsion = 24203.782390 eV Total energy + Delta-G solvation = -3915.496955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76228 -39.85547 -39.06953 -36.34478 -34.45223 -33.88628 -32.39826 -32.00319 -31.09630 -29.76830 -28.60898 -27.81152 -27.19570 -25.98850 -24.58347 -22.52676 -22.00444 -20.50945 -20.44421 -20.23810 -19.73827 -18.10240 -17.03707 -16.70759 -16.28918 -15.54766 -15.34368 -15.27235 -14.65155 -14.56533 -14.32411 -14.24953 -14.06795 -13.80277 -13.71000 -13.45775 -13.18611 -13.02969 -12.84186 -12.78436 -12.44490 -12.25731 -11.97117 -11.86415 -11.68320 -11.56708 -11.14106 -11.09911 -10.84148 -10.50574 -10.26372 -10.20028 -10.10602 -9.81509 -9.71122 -9.16718 -8.97839 -8.93780 -8.43266 -8.03771 -6.87904 -5.83904 -3.17188 1.33976 1.57099 1.73016 2.14757 2.35171 2.46397 3.31551 3.36543 3.40437 3.41816 4.10180 4.13427 4.34429 4.39038 4.54432 4.69255 4.91737 4.94954 4.98688 5.00738 5.23328 5.30462 5.34261 5.36972 5.38332 5.40907 5.50103 5.56458 5.58640 5.59994 5.69822 5.84490 6.00686 6.09671 6.15496 6.30003 6.48375 6.52428 6.53822 6.75081 6.77539 6.79488 7.03623 7.25076 7.30393 7.32745 7.43242 7.50293 7.66345 8.10983 8.12077 9.08995 9.68878 10.35872 11.30169 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.002127 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.797927 B =13158.134298 C =13525.778053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.119 3.881 3 N -0.295 5.295 4 N -0.463 5.463 5 H 0.441 0.559 6 C 0.133 3.867 7 C -0.100 4.100 8 C -0.284 4.284 9 C 0.598 3.402 10 O -0.538 6.538 11 N -0.715 5.715 12 C 0.169 3.831 13 C -0.131 4.131 14 C -0.104 4.104 15 C -0.113 4.113 16 C -0.081 4.081 17 C -0.106 4.106 18 C -0.083 4.083 19 C 0.175 3.825 20 N -0.601 5.601 21 C -0.227 4.227 22 H 0.083 0.917 23 C -0.007 4.007 24 N -0.924 5.924 25 Si 0.918 3.082 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.283 1.283 29 C 0.205 3.795 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 11.561 18.106 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 N -0.118 5.118 4 N -0.169 5.169 5 H 0.286 0.714 6 C 0.000 4.000 7 C -0.158 4.158 8 C -0.299 4.299 9 C 0.382 3.618 10 O -0.415 6.415 11 N -0.366 5.366 12 C 0.047 3.953 13 C -0.132 4.132 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.082 4.082 17 C -0.107 4.107 18 C -0.102 4.102 19 C 0.050 3.950 20 N -0.327 5.327 21 C -0.354 4.354 22 H 0.101 0.899 23 C -0.203 4.203 24 N -0.570 5.570 25 Si 0.748 3.252 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.210 1.210 29 C 0.081 3.919 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.433 12.293 18.624 24.227 hybrid contribution 0.103 -0.450 -1.267 1.349 sum 9.535 11.842 17.357 23.074 Atomic orbital electron populations 1.20302 0.85969 1.03953 1.03710 1.22354 0.97032 0.88782 0.96680 1.77108 0.86122 1.22159 1.26392 1.45977 1.07657 1.04714 1.58583 0.71401 1.21386 0.96147 0.85053 0.97400 1.20589 0.92175 0.98802 1.04240 1.19865 0.92160 0.94316 1.23577 1.17289 0.76565 0.84420 0.83516 1.90787 1.51303 1.67540 1.31840 1.46217 1.68475 1.13353 1.08577 1.20133 1.00694 0.81223 0.93297 1.19460 0.94473 1.04005 0.95252 1.20809 0.97781 0.99102 0.94522 1.20495 0.96868 1.01426 0.94327 1.21549 0.93098 0.94786 0.98753 1.20726 0.97401 0.98537 0.94030 1.20308 0.96767 0.99876 0.93244 1.19710 0.92509 0.96953 0.85877 1.43948 1.08527 1.70948 1.09287 1.18935 0.93737 1.34538 0.88227 0.89892 1.24838 0.96577 1.00611 0.98302 1.69912 1.12337 1.45826 1.28973 0.86101 0.79033 0.77898 0.82152 1.21000 1.21490 1.20988 1.19739 0.85956 0.99652 0.86547 0.89709 0.90063 0.90256 0.89277 0.90259 0.89167 0.76135 0.90767 0.90716 0.86358 0.86167 0.86481 0.94562 0.94599 0.93411 0.91836 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.27 36.01 0.37 -0.33 16 2 C 0.12 1.30 7.26 -82.02 -0.60 0.70 16 3 N -0.30 -3.22 12.63 33.89 0.43 -2.79 16 4 N -0.46 -3.73 7.29 33.86 0.25 -3.48 16 5 H 0.44 1.99 8.96 -182.72 -1.64 0.36 16 6 C 0.13 1.13 7.29 -81.60 -0.60 0.54 16 7 C -0.10 -0.54 10.25 36.01 0.37 -0.17 16 8 C -0.28 -3.09 5.88 -105.07 -0.62 -3.71 16 9 C 0.60 7.18 6.98 -12.51 -0.09 7.09 16 10 O -0.54 -8.32 17.11 5.28 0.09 -8.23 16 11 N -0.71 -7.49 5.55 -62.56 -0.35 -7.84 16 12 C 0.17 1.88 5.80 -5.19 -0.03 1.85 16 13 C -0.13 -1.69 5.25 -104.65 -0.55 -2.24 16 14 C -0.10 -1.36 9.70 -39.61 -0.38 -1.75 16 15 C -0.11 -1.79 10.05 -39.54 -0.40 -2.19 16 16 C -0.08 -1.57 6.22 -104.57 -0.65 -2.22 16 17 C -0.11 -1.96 6.22 -104.57 -0.65 -2.61 16 18 C -0.08 -1.22 9.70 -39.54 -0.38 -1.61 16 19 C 0.18 3.68 7.25 -5.08 -0.04 3.64 16 20 N -0.60 -15.35 3.41 -175.67 -0.60 -15.95 16 21 C -0.23 -6.21 10.32 -15.06 -0.16 -6.37 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.42 10.45 55.49 0.58 -25.84 16 25 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.21 4.96 5.39 -5.08 -0.03 4.93 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.53 7.95 -51.93 -0.41 0.12 16 36 H 0.40 3.89 8.45 -40.82 -0.34 3.55 16 37 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.07 0.85 8.08 -51.92 -0.42 0.43 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 46 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -33.79 390.32 -11.04 -44.83 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.78 Total: 1.59 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -4.52 Total: -4.73 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.31 Total: -55.90 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.79 -11.04 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054285833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.085 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds